RNA id: XM_039791825.1


Basic Information

Item Value
RNA id XM_039791825.1
length 2653
RNA type mRNA
GC content 0.44
exon number 1
gene id LOC120553439
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 14465755 ~ 14468407 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAAGGCAAAATGCCAACAAGTGTTGCAATGTGTCCACAAAGCAGCtagggaagaagaagactgctagCTAGTAAGTTTGTAAACAATGCACAATTTAAAATAGACTGTTTCATGACGACGAAAATGCACTAAACACACGGATGCACACACTGCGTTTTGGTGAGTAACACTAAATGTAaacagtactgtatgtaaacagaactgttgtttgttgttctcAAGTTGGGTTCACTAGCTGTGTTCACAAAACAAGGTTTTTCCAGGGAGCACGTGAACGCAGCAGTCACTTCGTGTAGTGCAGGAGATGATTGCAGTCGCAGCTCGCTTTACTGTGCAGCCGCAGCGGAACACAGAAAATGTGTAGGAAGAGGGAAGCTGAATCTCTCTTGACATAGTGACTGGTCATGGCCAGTCGGTGGCGAGACGGTCCTCGCAGCCGTTCAGAAGACCCCGCCTGTGGCCTAAAAACGCAAATGCCCCGCCAACAAGAGCCGTCCGGAGAGACAGAGGACGCGGCGGAGCCTCTGCGGGAGctgccgcgatggatgcggctTTACTTCTACGGCATGCACGGCGTAACTCTGGATGTCCTGCTTTCATCATTACAGGGGGCTTTAAATCACCCGGACCCCAAACTGGTGGGCTTTTCCTCTCCGTATCTTTGCATTATGCATTCACTGACCCACTTTGCACTGGAGAAGATCTACTCACAGAAGAGGTGTTTCCGAGGTCGGCCTGTGGTGTTTCATCTCGTTTTCTACCCGTCTGTGTACATCGGGCTGCAGATCCTGATGGGGAACATCAACATTTTGACCGAGCAGGTGAGGGTGGTATCTGGCACGCAGCTGGTTGTACACTACATCCTGGCTCTCTATTTTGCCCAGGTGTTTCACAGGGGGCTGTCAAGGTTGCAGTATCACCCCCCCTGCAACCCCGACCCCCCCGGGAAACCCGGCCCGGAGGACGGTGGTCATGATCGGGGGCCTCTTCACGTTCTCCCCGGCTATGTGCGTTTCTTGTTCTTTGGGATGCAGGGATTTCTGGACGAGGTGATTTTCACCTCCATTTTCAACCTTGTGGAGAAGTCTGACCGGACCCTCAGCGGCCACACGTCCCTGTGGTCTTTCCTGATGTACGGGAGCTGCAGCTTCGTGGTAGAAAGGCTCTACTTTTACCTGCACTTCAGCAGAGGCTGGGGGACGTGGCGGCGGCTCCCCATCTACATCTGCTTCATCTACACCTGGGAGTTCACCTGGGGTCTGGTCCTGAGGCAGTTTGGCGCCTGCTCCTGGGACTACTCCCATTATCCTCACAACTTCATGGGACTCATCACGCTCCTCTACTTGCCAGGCTGGGTGTGCCTCAGTCTGTACCAGGACTTACTGTCTAATGTGCTGCTGAGAATCAAGTGCACCAAAGACGTAAATGGTTTGAGTGGGGAGAATGGTGAGATCAATGGAGCACTGGAGTCTAAGAAAAAACGagtttaatttttctttttgatgttttaaCTTCAAGGGGAAGTGTGACTCACAGTAGACCAATGATGAAACAAGCAGACATGTTATTCTAATTAATACATTCAATTAAACTGATttgatggagagaaaaaagaaaaaaggcataaaagttTATTTAGAACTGCAAGATGTAAAATTGTATAATGTGGGATCAGATTGGCCTTTCAACTCAAATCATAGTATAAATAGGTCTGTTGGTCAGCAATATGTTGCCATGATGACAACATATGTTGTGATGTTGAATATAGGATTTAACATTTTGTAAAGTTAATATTTTCAGAAAGTTTAGAGTCAGGTATTCAGAGTCTAGGCACTTGTTACCGGTATGCAGAGGAGACATTTTCCAGTTGATGATGATATTTCTGTGTCCAGTAATACACAACTGATGCTGAATTGTTCACCTAACCGGTTTAAAATTCAGTTAACCTACTGCCATTTCTATATATCTGATGTAAAATGTAGTTGTAATGTTAATATTTATAGTCTTCATGACACAAGTGtgaatattatttttcttttcgtCATGATTGCAGTGGCAGACTTCTTGCCATCTTATACGTTACATGCATTGTGGCAGGTCTAGTTTGAGTTGCCTTGATTGTGtcatttaaatatgcatttgcATGCTTTAGCTGTAGTTCATGTCTGCATAGAAATACAAATAATCTGGAAGGTTTATAGATTAGATATGATATTCAAAGTCTGTATTTTCAAGACAAAGAAGACATGAAAACAACTGGACCCTAGTAACCCATTGTCCCATCTTCTTTTATGCAAGCaatctgtttttaaatgtccatCTCTTTTGTCAATgttaatttacattttgaaacaaACTCACTATGTTCACTcatcctgtaaaaaaaaaaaaaaaaaaatcatcccaCCTGAAAATCTGTACTGTAGCTGAATGGATACGAGGAGCCAAGTTAGATTTTACTCTGTGAATCTTTTATGAACCAAACGTTACTTTGCTGGAGTGCCTTCCTGTGCACAGAGTCAACCAGACTCAAAACAAACCAGGCTCAGTGTTCAAAGGGCTCCTTTTTTATATTAGAAGCACAGCAGTGTTTTGCAGCaatgattattataaaaaatattttaaccgTCAACACAAATGATGGTCTCTGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309249 lncRNA downstream 39263 14424237 ~ 14426492 (-) False waslb
TU309250 lncRNA downstream 39263 14426118 ~ 14426492 (-) False waslb
TU309114 lncRNA downstream 233949 14231543 ~ 14231806 (-) True G227814
XR_005638083.1 lncRNA downstream 246157 14178745 ~ 14219598 (-) True LOC120553016
TU309112 lncRNA downstream 285249 14178772 ~ 14180506 (-) False LOC120553016
TU309275 lncRNA upstream 165703 14634110 ~ 14635577 (-) False grm8a
TU309356 lncRNA upstream 167248 14635655 ~ 14643449 (-) False grm8a
TU309360 lncRNA upstream 301591 14769998 ~ 14770247 (-) True G228019
TU309361 lncRNA upstream 302091 14770498 ~ 14770967 (-) True G228020
TU309362 lncRNA upstream 305910 14774317 ~ 14774848 (-) True G228021
XM_039791691.1 mRNA downstream 15166 14426067 ~ 14450589 (-) True waslb
XM_039791677.1 mRNA downstream 59262 14401227 ~ 14406493 (-) True LOC120553349
XM_039791673.1 mRNA downstream 67976 14392392 ~ 14397779 (-) True LOC120553347
XM_039791614.1 mRNA downstream 74478 14375636 ~ 14391277 (-) False LOC120553322
XM_039791824.1 mRNA upstream 66471 14534878 ~ 14553865 (-) True gpr37b
XM_039791865.1 mRNA upstream 166559 14634966 ~ 15047451 (-) True grm8a
XM_039791870.1 mRNA upstream 166559 14634966 ~ 15039550 (-) False grm8a
XM_039791869.1 mRNA upstream 166559 14634966 ~ 15038320 (-) False grm8a
XM_039791868.1 mRNA upstream 325358 14793765 ~ 15047202 (-) False grm8a
unassigned_transcript_1491 other downstream 656076 13809607 ~ 13809679 (-) True trnak-cuu_13
TU308919 other downstream 806483 13651662 ~ 13659272 (-) True LOC120553486
TU308872 other downstream 935977 13520265 ~ 13529778 (-) False LOC120553470
TU308500 other downstream 2177601 12284926 ~ 12288154 (-) True G227429
XR_005638137.1 other downstream 2616814 11838944 ~ 11848941 (-) False cracr2ab
TU309376 other upstream 591596 15060003 ~ 15061429 (-) False znf800b
TU309380 other upstream 593856 15062263 ~ 15088329 (-) False znf800b
TU309610 other upstream 1302831 15771238 ~ 15791853 (-) True G228191
TU309744 other upstream 2280435 16748842 ~ 16823432 (-) True G228291
TU309971 other upstream 2826715 17295122 ~ 17302198 (-) True G228465

Expression Profile