RNA id: XM_039791835.1


Basic Information

Item Value
RNA id XM_039791835.1
length 3546
RNA type mRNA
GC content 0.46
exon number 10
gene id pnpla8
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 15751064 ~ 15760526 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACATCCTCCCTTCTGAATGAAATACTCTATTTTGGCAACATATTTAACCCTCTTTGTTTCGTATGgaaaCATTAGAACAAGCAGCAAAAATTGCTAATTTCCTTCCAAAATGGAATTTCTACCAAAACCTGCTAATGGCAGGTAGCCTGCCAGAATGCTGCATCGTTTAACACCGTCATGAAGCATCATCCGATTGCCTGATTAACTTCAAGTTCTCCACTGCTGTTCCGAGTGAGCCAGAAAACGTATGTCGCGAATCAGGACCACACTTGATAGTGTCACCAAAGCAGTAGGCAGCACAGACCTCATCTCCAAGTTCTCCCGCTTCAAGCCTGGCAATGCCACAGTCGACAGCACCCATGCAGAAAAGGCTCTGGTCACAGCCGAGACCTTAACCTCTAACAACGCAGCTACAGCATCATCACCTAAAGCCACCatgaaggaagaagaagaagaagtggaaGAAGGCGAGAAGAACACAGCCGAGGAAGAGTCCGACATGCAACAGCAGCAAGAAAATCCTTTTGTTGCCACAAAGAAATCCACATCAAGTTTAGCTTCAGCAGTGAATGTATCTGCATCTAGCTCTTCCTCGACTTTGGCAAAACAAACTATGCAGCTGTTTCACCCAGCATCTCTGTCCACCAACATGGATGAGACCTACAAAACTCTGGCTCAGCACATCAATAGTTACTTTGGCACCAGcacacaagaagaagaaggagacaaCAGGccactgcagcagcagcagcaccaccaccaccacagagAAGCTGATGATCCTGTTTCTCAGCCCACTCTCAGCACCGTTGCTCGCACAACTAGGGACCACATTCCTATGTTGTCCTCAGTGGCAGAGGCTAAAAGTATTGAAGCACCCGCtacctctcctccccctctctctccatcagatAAGCTCAGTCCTCCAGCAGCGTCGCCCTCCTCTGACATCCCTGCAACTGAAAGTGCAGCTCAGTCCATCCCTGTGCCTGCTTCCTCCCCTAAGAAAGGCTTCACCCACTACCTTTCTTACCCTCGGCCCAGCGTTCAGGCGTTTGTCGGCAGCTACATTGCACCCCTGGTCCCCAAATTCAGAGGTGATTCCAAAAGCATTGCACCTGAAAAAAGCAAGTCTTCAGCAGTAGCTGTGGAAGAGCCCACTGTTGACAAGGCAGGACAGAAGACAGACAGTGAAGAGGAGAAAAAGGATGAAGTGAACCAACAGCTGTTGACTCAAAGAGAAAAGATAATAGCCAGGGTGAGTTTAGACAACAGGACCAGAGCCCTGGTGAAAGGCCTGCAGAGAGTCACTGATGTCAAGCTCCTCACCAGTCGAGTGGAGGAGCTCATCCATCACCTTCTGGAGTTCCCCGAGACGCGAGGTGTAGCTGTCAAGGAGAGTGTGCTGCCCTGTCTGCTGCGATTGCGCCAGGCCAGAGACCTGCCTCTTCAGGGTGCTGTGAGAGAAGCTCTGGCCCTGATTGGCTACACTGAACCAGTCAAAGGCAGAGGAATTCGGGTCCTGGCCATAGACGGAGGCGGAACAAGGggactgctggccctgcagacGCTCCATAAACTGCAGAACCTGACTGGTAAACGAGTCCACCAGCTGTTCGACTACATCTGTGGAGTCAGTACAGGTGCTATTTTGGCCTTCATGTTGGGAATTTTTCAGATCCCCTTAGATGAGTGCGAGGAGATGTACAGGAAGCTGGGCTCGGATGTCTTCAAACAGAATGTCATCGTTGGAACCGTAAAGATGGGCTGGAGCCATGCTTTCTATGATAGTGAAATATGGGAAAACATACTGAAGGAACGTATGGGTGAGGGGCGTATGATTGAGAGTGCTAGGGACCCACACTGCCCGAAAGTGTCAGCAGTGAGCACCATTGTGAACAGGGGATTACCTTTGAAGGCCTACGCGTTCAGGAACTACCGACTCATGCCAGGAGTGAGATCCCACTACCTTGGAGACTGCAACCACAAAATGTGGCAGGCTATCAGGGCCTCGTCTGCCGCCCCAGGCTACTTCCAGGAATTTGTCCTGGGAAAAGACCTCCATCAGGATGGGGGACTCCTGATCAACAACCCCACAGCGTTGGCCATCCATGAGTGTAAGTGTTTGTGGCCTAACACACCCCtgcagtgtgtgttgtctctgggCACCGGGCGGTACGAGGCAGCGGGCAAGAACAGCACGACCTACACGAGCCTGAAGACCAAGCTCACCCACGTCATCAGCAGTGCCACAGATACCGAGGaGGTGCACACCATGCTGGACGCACTCCTGCCCCCTGACACATACTTCCGCTTCAACCCCTACATGAGCGAGGACATCCCGTTGAACGAGAACCGCGCCGAGAAGCTGAACTTCCTCAAGGGCGAGGGGGAGCGCTACCTGGAGCGCAACGAGGCCAAGCTGAGGAAGGTGGCGAGCGTGCTCAGCCAGGAGAAGAGCGCAATCCAGAGACTGGCAGAGTGGGCCAAGCTCAAGGCCGAAATGTACGAGGGTCTCCCCTTTGTCTCCAAGCTGTAGTTATTGGTTTGGCAACAGTCTGACCACAAGTGAGTTTTTAAGGTAAGAAGACCCGATAGATTAGGGGACAATCTGGACACATTTGTTAAGCATTTTGGTAGGCAAATTAATCAAAtaccaaattattttttttttcacgttttCATCACCATTTACCACAACACTAGACAATTACAACTATGattatgcattaaaaaaaagacaatacagTAAATAATGTGGAAAATTTCAAATATGATGTAATTTGTTCTTTGTGAGACAGACTGTGTCTATGATGAAGCCGgaataatatatgaatatgatTGATGAAATGAATTACTTGAATGATCGGGGAAAGGCTGGCTAAAAGTGTTAGTTGACAGAACGCACAAAGATGGTAATGTGGCACTGACACATGACCATAATATAAAGAATTAATGGTAATATGATAACTTTagttattttgtaaaaaaaaaaaaaagtgatatttatttgcattttcaaTAACTTGAAGACAAGATGTATTTAACACATGTATGTTGCAAAGTGAAAACATAAACACGACTGCCTATTTCTAACACTGTACAGAAGAAGGAACTAATGCACTTTGTAAAATAGAGCTCTTAACcatgaaaatgtaaataatatttGAAATAATTATAAATGATTTGAGTGCTCTTGCTAGAATTTAAGAATAAGACAAAAGAAATACTGCTGATTCTTAATTTCACTGTGCTGTATATGCACTTCCAGACACTTAAATATCTGTTCCGATACCAATGGTAAAGTTTTAGAATGCAATGACTGTTTTCCTCTTGGTACAAAGCATGTTCTCCATTGTGGCCGATTACTCAGTATGAAGCTTTTGTCTGAATTCCTCAGCCCTGGCTGATAATAAATCATAAATTTGACACACTTTTTACATTGTGAGAATCCATATTGCCCTGATTCCTCCCTTCATTAGTTGGTGGAATgcgaaaagaaaaataaatgtcatgaaaaaataaaatgtacgtTTTAAAAACCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309501 lncRNA downstream 219625 15531131 ~ 15531439 (-) True G228120
TU309482 lncRNA downstream 240282 15494704 ~ 15510782 (-) False G228111
TU309481 lncRNA downstream 240282 15494995 ~ 15510782 (-) False G228111
TU309483 lncRNA downstream 240282 15499836 ~ 15510782 (-) True G228111
TU309475 lncRNA downstream 257647 15492354 ~ 15493417 (-) True G228109
TU309647 lncRNA upstream 455621 16216115 ~ 16224149 (-) True G228221
TU309734 lncRNA upstream 775524 16536018 ~ 16536293 (-) True G228283
TU309741 lncRNA upstream 986249 16746743 ~ 16747040 (-) True G228290
TU309755 lncRNA upstream 1064335 16824829 ~ 16831239 (-) True G228295
TU309834 lncRNA upstream 1154113 16914607 ~ 16949806 (-) True G228360
XM_039791366.1 mRNA downstream 4650 15690105 ~ 15746414 (-) True nrcama
XM_039791365.1 mRNA downstream 61742 15675627 ~ 15689322 (-) True cntn1b
XM_039791123.1 mRNA downstream 159776 15554225 ~ 15591288 (-) True pdzrn4
XM_039791540.1 mRNA downstream 259777 15472275 ~ 15491287 (-) True pphln1
XM_039791843.1 mRNA upstream 7203 15767697 ~ 15770004 (-) True LOC120553447
XM_039791844.1 mRNA upstream 29654 15790148 ~ 15797208 (-) True LOC120553448
XM_039791848.1 mRNA upstream 255194 16015688 ~ 16037158 (-) True mdfic
XM_039791330.1 mRNA upstream 299015 16059509 ~ 16164901 (-) True foxp2
XM_039791336.1 mRNA upstream 299015 16059509 ~ 16164900 (-) False foxp2
TU309380 other downstream 662735 15062263 ~ 15088329 (-) False znf800b
TU309376 other downstream 689635 15060003 ~ 15061429 (-) False znf800b
unassigned_transcript_1491 other downstream 1941385 13809607 ~ 13809679 (-) True trnak-cuu_13
TU308919 other downstream 2091792 13651662 ~ 13659272 (-) True LOC120553486
TU308872 other downstream 2221286 13520265 ~ 13529778 (-) False LOC120553470
TU309610 other upstream 10744 15771238 ~ 15791853 (-) True G228191
TU309744 other upstream 988348 16748842 ~ 16823432 (-) True G228291
TU309971 other upstream 1534628 17295122 ~ 17302198 (-) True G228465
TU310227 other upstream 2070178 17830672 ~ 17927705 (-) False tafa5a
TU310229 other upstream 2070178 17830672 ~ 18100995 (-) False tafa5a

Expression Profile