RNA id: XM_039791859.1


Basic Information

Item Value
RNA id XM_039791859.1
length 4260
RNA type mRNA
GC content 0.53
exon number 23
gene id aldh1l2
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 24797395 ~ 24826222 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCTGGCTGTGGCGAGCCCATAGCAAAGCACACAGCACCGCCTCTGACTCacgcagtcacacacacactgatactcCCACAGAAGCAGGTGTGTGTGGCCAGCAGCGCACAGACCTCAGCAGCGGGTCGGACAAAACTCTGCAGcatttggatttatttttttttttacatacatttttatatataaaacacCGCCATTATGTTGTGGACGGCGAGCCAAGTCTTAAGGAAATTCTCCACCTCGTCCAATTATTACCAGAATAAGCTCAAACTAGCTATAATTGGCCAGAGCGTGTTCGGCCAGGAGGTGTACAGCAACCTGAGGAAGCAGGGTCACAAGGTGGTGGGTGTGTTCACAGTCCCCGACAAGGATGGCAAGGCCGACCCCCTGGCGGTGGCGGCGGAGAAGGACGGGACGCCGGTGTTCAAGTTCCCCCGCTGGCGGGTCAAGGGGAAGCCCATCCAGGAGGTGGTGGATGCCTACAAGGCGGTGGGCGCCGAGCTCAACGTCCTGCCCTTCTGCTCTCAGTTCATCCCCATGAACGTCATCGACAACCCCAGGCACGGCTCCATCATCTACCACCCCTCCCTCCTGCCCCTGCACAGAGGAGCCTCGGCTATTAACTGgACCCTGATCCACGGTGATAAGAAAGCTGGATTCACAGTGTTCTGGGCTGATGATGGACTGGACACCGGACCAATCCTGCTGCAGAGGGAGTGCGCTGTGGAGCCCACCGACACCGTGGACACACTCTACAACCGCTTCCTCTTCCCAGAGGGCATCAAGGCTATGGTGGAGTCGGTGAAGCTCATTGCTGATGGAAAGGCCCCAAGAGTTCCCCAGACGGAGGAAGGAGCGAGCTATGAAGGCATTCAGAAGAAATCCAACGCCAAGGTCAACCTGGCCCAACCAGCGCAGGACATCCACAACTGGATCCGCGGCCACGACAAAGTCCCCGGTGCCTGGACGGTCATTGATGGGCAGGCTGTGACCCTGTATGGCTCGTCCATGTTGGGGGGGTCGCTACCAGCCGGTCAACCCCTGGAGATAGCGGGGGCGCCCCAGCCAGGCCTGGTCACCAAGAACGGGCTGGTGCTGTATGGAACCGATGGGAAagctCTCCTGGTGAAGAACCTGCAGTTTGATGATGGCAAGATGATCCCTGCTTCTAAatacttcttctctggggaaaGCTCCAGTGTGGAGCTGACTGCTGATGAAGAGAAGATGGCAGAGGAGATCAGGGACATCTGGAAGGGCATCCTCAGCAATGTCCCAGCCGTTGAGGACACAACAGACTTCTTCAAGTCCGGGGCCGCCTCCATGGATGTAGTCAGgCTGGTGGAGGAGGTGAAGCAGAAGTGCGCCGGCGTCCAGCTGCAGAACGAGGACGTGTACATGGCTACCACCTTCCAGGACTTCATCCAGATGTTTGTCCGCAAGCTGAGAGGGGAGGACCAGGAGGAGGAGCTGGTCATCGACTACGCAACCAAAGAAGTGAACAACATGACAGTGAAGATGCCAACCCAGTGTTTTATCAACGGCAAGTTTGAGGATGCAGAAAACGGCAAAAGCTACAATACCATCAACCCTACTGATGGATCAGTGATCTGTAAGGTGTCCTACGCCTCAGTGGGGGATGTGGACCGGGCAGTGGCAGCTGCCAAAGAAGCCTATGATAATGGACCATGGGGCAAAATGAAccccagagacagaggaagtcTGCTTTACAAGCTCGCAGACCTGATGGAGGAACACCAGGAGGAGCTGGCCACCATCGAGTCCATTGACTCGGGAGCTGTGTACACGCTGGCCCTCAAGACACACGTAGGCATGTCCATCCAGACCTTCCGATACTTTGCCGGCTGGTGTGACAAGATCCACGGCAAGACCATCCCCATCAACCAAGCCAGGCCCAATCGAAATCTGACCTTCACTAAGAGAGAACCACTGGGtgtgtgtgcCATCATCATCCCATGGAACTATCCTCTCATGATGCTGGCGTGGAAGAGCGCTGCCTGCCTCGCAGCAGGGAACACGCTCGTTCTGAAACCCGCACAGGTCACTCCGTTGACGGCACTGAAGTTTGCTGAGCTGTCCGCGAAAGCTGGCATTCCAAAAGGAGTCATAAACATTTTGCCAGGCTCAGGTGGAATGGTGGGACAGCGCTTGTGCGACCACCCAGACATCCGCAAGCTGGGCTTCACCGGCTCCACGCCTATCGGCAAACAGATCATGAAGAGCTGTGCGCTCAGCAACCTGAAGAAGGTTTCTCTGGAGCTGGGAGGGAAGTCGCCTCTCATCATCTTCAGCGACTGTGACATGGACAAGGCGGTTCGCATGGGCATGAGCTCTGTGTATTTCAACAAGGGGGAGAACTGCATCGCTGCTGGGCGTTTGTTTGTGGAGGAGTCCATTCATGATGAGTTCATCAGCCGAGTGGTGGAAGAGCTGAAGAAGATGAAGATTGGCGACCCACTGGATCGATCCACAGACCACGGCCCACAGAATCACAAAGCCCACATGGACAAGCTGCTGGAGTACTGTGAGGTCGGACTGAAGGAGGGAGCCACGCTGGTGTACGGAGGCAAACAGGTGGACAGGCCAGGTTTTTTCATGGAGCCCACTGTCTTCACTCATGTCGAGGACCACATGTTCATCGCCAAGGAGGAGTCCTTCGGCCCTGTCATGGTGGTGTCCAAATTTAAAGATGGCGATGTGGACGGCGTGCTGCAGAGAGCCAACGCCACCGAGTACGGCCTGGCCTCGGGCGTGTTCACCCGCGACATCAACAAGGCCATGTACGTGAGCGAGCGGCTGGAGGCTGGAACAGTATTCATCAACACCTACAACAAGACCGACGTGGCTTCACCTTTCGGAGGCTTCAAACAGTCCGGCTTTGGCAAAGACCTCGGAGAGGACGCTCTACTGGAATACCTCAAGACCAAAGCAGTGACTGTGGAGTACTGAGGGGCGGACTCCAACCAACTCGGAGCCACATCTCAATAGGAAAAGGACTCGTCTGTCTGCTTCAGGCAGACATCCAGCTTCATACAGCATTGCTTCTGGAcagcgtgcttgtgtgtgtatttgtgcgtgtgcgcgtgtgacgtgtgtgtactgtatgaatGAGAGGAGAGCTTTGTTGTTCGTCTCTGCCGCAGTTTGGACACCtgcgtaaaaaaaataataataatcagatcGTGGACAAGGGACACGTGTGGTTTACACACATCTGTATATCCACACATAAAACCCAGAGTCGGACGTCTGGTGGCAGCCGGGCTGGTTAAGACTATTTTCAATCTTTCAGTTCCATAAAAGtgttttatgttaaaacactattTTCGACCTAAAATCTGTTTTCCCATCATTATCAATCGCGTTAATCAGTTCCATTCAAACTTTTGAAAATCATCTGCAATCATGCCTTTCTCATTCACTCGCCTTCATCATTCCTATAATATCTCCCTGGTTACTCTTTGACAGCTTTTGGGCTGCTGTGTGCCGTATCACTTTTCTTATTGATGGATAACTCATCTGTACATGAATATGACTGTTGTAGCGTGTGTTTAGATGTCTTTGGGTTGAGTTTTGGAGTAGCCAGTGTCCTGCCTGACAGGACTAAACTGCTTAATCACAGAGCTATTGGTCAGAATTTATCATCGAAAACAGGTCAAAAAGCCAGAGTTACATTTGAATTCTCAATTAATCCACATGAAAGCAAAGGTCAATTTGCTAAAGGttttttcaaagcttttaaCCCTAATCTTATAGTTTTCATCTGCGgtacacacatcaacacacaaaaatactgCGCAGGCGTCAACACTTGGGCTTCCTGTCCGTCATTGCAGCAGTACTccatatcgacgacgtttcatttccgcgCTTGTTCAGGCGCcactggaaattccgccggaagGTCctcatttcggccagatgtcccgttaccttcccctttctttgtgttggcgttctaacctctggtggatttgtgaggactatggttaactgctcctcagatctctgcagggtaaatccagacagctagctagactatctgtccaatctgagttttctctcgcacgactaaactTTTGAACGGGGCGGACTCTAGCTCACGCAGTAGAGCGTGGGCCCCATggaggctgagtcctttgcagcagcccagggtttgaatccgacctgcagccctttgctgcgtgtcaacccctctctctctctgtcccttttcctgtctatcctctatcaaataa

Function

GO:

id name namespace
GO:0009258 10-formyltetrahydrofolate catabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0006730 one-carbon metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0032259 methylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0016742 hydroxymethyl-, formyl- and related transferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0016155 formyltetrahydrofolate dehydrogenase activity molecular_function
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor molecular_function

KEGG:

id description
K00289 ALDH1L; formyltetrahydrofolate dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312203 lncRNA downstream 69373 24691065 ~ 24728022 (-) True G230178
TU312194 lncRNA downstream 117034 24620919 ~ 24680361 (-) True G230170
TU312199 lncRNA downstream 133714 24634020 ~ 24663681 (-) True G230174
TU312201 lncRNA downstream 144570 24650991 ~ 24652825 (-) True G230176
TU312188 lncRNA downstream 226077 24569302 ~ 24571318 (-) True G230165
TU312265 lncRNA upstream 115036 24938873 ~ 24997629 (-) True G230221
TU312337 lncRNA upstream 255425 25079262 ~ 25079726 (-) True G230277
TU312338 lncRNA upstream 255425 25079262 ~ 25079726 (-) False G230277
TU312339 lncRNA upstream 255425 25079262 ~ 25079726 (-) False G230277
TU312346 lncRNA upstream 374981 25198818 ~ 25199309 (-) True G230281
XM_039791854.1 mRNA downstream 172 24791492 ~ 24797223 (-) True LOC120553455
XM_039791522.1 mRNA downstream 231589 24508776 ~ 24565806 (-) True slc41a2b
XM_039791521.1 mRNA downstream 231590 24508776 ~ 24565805 (-) False slc41a2b
XM_039791875.1 mRNA downstream 422171 24365338 ~ 24375224 (-) False LOC120553465
XM_039792222.1 mRNA upstream 19555 24843392 ~ 24863709 (-) True samm50l
XM_039792323.1 mRNA upstream 290162 25113999 ~ 25184485 (-) False LOC120553669
XM_039792320.1 mRNA upstream 290162 25113999 ~ 25184471 (-) False LOC120553669
XM_039792322.1 mRNA upstream 290162 25113999 ~ 25184471 (-) False LOC120553669
XM_039792321.1 mRNA upstream 290162 25113999 ~ 25184471 (-) False LOC120553669
unassigned_transcript_1528 other downstream 220374 24576950 ~ 24577021 (-) True trnap-agg_20
TU311926 other downstream 882703 23908556 ~ 23914692 (-) True G229950
TU311924 other downstream 882703 23912101 ~ 23914692 (-) False G229950
TU311825 other downstream 1085600 23692021 ~ 23711795 (-) True LOC120553170
XR_005638196.1 other upstream 367946 25191783 ~ 25217693 (-) False sult4a1
TU312561 other upstream 771743 25595580 ~ 25601366 (-) False LOC120553115
TU312668 other upstream 1356714 26180551 ~ 26196487 (-) False mkrn1
TU312734 other upstream 1551855 26375692 ~ 26381365 (-) True G230594
unassigned_transcript_1529 other upstream 2177215 27001052 ~ 27001123 (-) True trnaw-cca_36

Expression Profile