RNA id: XM_039791861.1


Basic Information

Item Value
RNA id XM_039791861.1
length 2459
RNA type mRNA
GC content 0.49
exon number 20
gene id LOC120553458
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 18561096 ~ 18652690 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tcttactGGCACCTTTGCTCCACTTCTCGCCGAGGAGGCGCACACTCACTTTATCTCGCTATCCTCCTTCGCAGCTCACAAAAAGGGGCCGGGTCACACGCAGAAGGGGGAAGAGGAAaggcaaaacattttttgacagGATGAACAACACTTTCCTAAACATGGCGTCGATAGGCGACTTCGACCCGCTCAACGCGTCTATTCCTGCCACCAAAGTTGAAATCACAGTGTCCTGCAGAAACCTGCTGGACAGGGACACCTTCTCCAAATCAGACCCAATTTGTGTTCTCTACACACAAGGCATGGGCAACAAGGAGTGGAGAGAGTTTGGGAGAACAGAGGTGATAGACAACACGCTAAACCCAGACTTTGTGCGGAAATTCATTTTGGACTACTTCTTTGAAGAGCGACAGAACCTCCGATTTGACTTGTATGATGTTGACTCGAAGAGCGCCAACCTGTCAAAACATGATTTTCTGGGCCAGGCCTACTGTACTCTCGGAGAGGTGGTTGGATCATTGGGCAGTCGCTCGGAAAAAGCTCTTGGAGGCATCCAAGGCAAGAATTGCGGGACCATTATTGTGAAAGCTGAGGAGCTGAACAACTGCAGGGAATCGGTAATGATGCAGTTCTGCGGGAACAAGTTGGACAAAAAGGATTTCTTCGGCAAGTCCGATCCCTTCCTGGTCTTCTACAGGAGCAATGAGGATGGCACGTTTACCATCTGCCACAAGACAGAGGTGGTGAAGAATACATTGAACCCAGTGTGGCAGGCCTTTAAGATCTCTGTTCGAGCTCTTTGCAACGGTGATTACGACAGAACAATCAAGGTTGAGGTGTACGACTGGGACAGAGATGGCAGTCATGACTTTATCGGAGAATTCAGCACCAGCTACAGAGAACTATCCAGAGGGCAGAGCCAGTTCAATGTCTATgagGTGATAAATCCAAAGAAGAAAGGGAGGAAGAAAAAATACCTCAACTCTGGAACGGTAACGCTGCTGTCATTCCTGGTGGACATCGACGTCACCTTCCTGGACTACATCAAAGGAGGGACCCAGATTAACTTCACCGTGGCCATTGATTTCACAGCTTCCAATGGTAACCCAGCCCAGCCCACCTCTCTCCACTACATGAGTCCCTACCAGCTGAATGCTTACGCAATGGCCCTGAAGGCAGTAGGAGAAATCATCCAGGACTATGACAGCGATAAGATGTTTCCCGCACTGGGGTTCGGAGCCAAGCTGCCACCTGACGGACGGATCTCCCACGAGTTTGCCTTGAATGGAAACCCTCAGAACCCCTACTGTACAGGTATCGACGGTGTGATGGAAGCCTACTACCAGAGTCTGAAGTCGGTTCAGCTCTACGGACCCACCAACTTCTCCCCTGTCATCAACCATGTggccaggtATGCAGCTTCGGTGAAGGATGGCTCCCAGTACTTTGTGCTCCTCATCATCACAGATGGCGTCATCTCAGACATGGCCCAGACAAAGGAGTCTATTGTCAACgCCGCCTGTCTGCCAATGTCAATCATCATCGTGGGGGTGGGTCCCGCAGAATTTGATGCCATGGTTGAGTTGGATGGCGATGAAATCAGAATCTCATCCAGAGGAAGATATGCTGAGAGGGACATTGTCCAGTTCGTCCCATTCAGGGACTACATCGACCGGACGGGGAACCACATCCTGAGCATGGCGCGGCTCGCCAAAGACGTCTTGGCCGAGATCCCTGACCAGTTCCTCTCCTACATGAGGACCCGCGGGATCAAGCCTTCGCCAGCGCCGCCTCCCTACACGCCGCCTCCTTACACGCCACCAGGGCAACCCATCCAAACCCAGATATGAGGAGCCAGAGGGAGAAAGGTTTCAGAGTCAGGGGTTAAGCTGAACTTTACGCGCAAAATACTTCCACATCCCTGAAGCCCGCTCTCCATGCCTTGTCGTCGTGGATCACGGTGGTCTTTCTCGTGTGTTCAGAAGGCTGCATGTCGAGCCAGGAGAGTGTCGCTTTTGAGGACAGGAAAAGCCAATGAGAGTCTGTTTACTTCCACTGTCAAGCATTCCTGTTACTGTCtggaattatttattttttcgcCTGGGGAAACCTGGAAAGGCCTCGGAGAGAGTACGGAAAGTCTGAATTCCTAGCAGGGAGGaaatgaaggaatgaaagaggaaaTGGACAGCTTTGGAAACATTGATAAGAGAATGTGTTCAGACAAAACAAAGGAATCACTTGATTTTAAATGAACTTTTTCTGTAAATAACCGGACATATGTaacttcttctttctctttctctctttctctctccaactCACtcattgtttacagtaaatgctAACAAAGATTTTTACTGTTGATACTTTTATATACACATAGTTTCATCAATATGAAGCGACCTCTcgcgcgctctctctctctctctctctctctctctctctctctctcactc

Function

GO: NA

KEGG:

id description
K24523 CPNE5_8_9; copine 5/8/9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310256 lncRNA downstream 1817 18558601 ~ 18559279 (-) True G228683
TU310257 lncRNA downstream 2587 18556053 ~ 18558509 (-) True G228684
TU310249 lncRNA downstream 191352 18363259 ~ 18369744 (-) False gramd4a
TU310251 lncRNA downstream 214099 18304585 ~ 18346997 (-) True LOC120553191
XR_005638127.1 lncRNA downstream 249349 18305560 ~ 18311747 (-) False LOC120553191
TU310292 lncRNA upstream 85706 18738396 ~ 18739510 (-) False LOC120553633
TU310303 lncRNA upstream 228471 18881161 ~ 18884075 (-) True G228713
TU310334 lncRNA upstream 240950 18893640 ~ 18975820 (-) True G228731
TU310370 lncRNA upstream 361965 19014655 ~ 19022242 (-) True G228759
TU310342 lncRNA upstream 509327 19162017 ~ 19270336 (-) False sox5
XM_039791712.1 mRNA downstream 25454 18533638 ~ 18535642 (-) True tprkb
XM_039791711.1 mRNA downstream 31004 18524936 ~ 18530092 (-) True trmu
XM_039791742.1 mRNA downstream 37219 18429107 ~ 18523877 (-) False celsr1a
XM_039791682.1 mRNA upstream 14431 18667121 ~ 18705237 (-) False LOC120553351
XM_039791680.1 mRNA upstream 17759 18670449 ~ 18705237 (-) False LOC120553351
XM_039791681.1 mRNA upstream 17889 18670579 ~ 18705237 (-) False LOC120553351
XM_039791679.1 mRNA upstream 17889 18670579 ~ 18705237 (-) True LOC120553351
XM_039792262.1 mRNA upstream 58324 18711014 ~ 18731666 (-) True LOC120553632
XR_005638136.1 other downstream 139689 18369675 ~ 18421407 (-) False gramd4a
TU310229 other downstream 460101 17830672 ~ 18100995 (-) False tafa5a
TU310227 other downstream 633391 17830672 ~ 17927705 (-) False tafa5a
TU309971 other downstream 1258898 17295122 ~ 17302198 (-) True G228465
TU309744 other downstream 1737664 16748842 ~ 16823432 (-) True G228291
unassigned_transcript_1496 other upstream 785827 19438517 ~ 19438599 (-) True trnal-cag_18
unassigned_transcript_1497 other upstream 790542 19443232 ~ 19443314 (-) True trnal-cag_19
unassigned_transcript_1498 other upstream 794331 19447021 ~ 19447103 (-) True trnal-cag_20
unassigned_transcript_1499 other upstream 795374 19448064 ~ 19448146 (-) True trnal-cag_21
unassigned_transcript_1500 other upstream 799298 19451988 ~ 19452073 (-) True trnal-cag_22

Expression Profile