RNA id: XM_039791863.1


Basic Information

Item Value
RNA id XM_039791863.1
length 2068
RNA type mRNA
GC content 0.52
exon number 15
gene id ttll12
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 25263996 ~ 25349341 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTGTCAAACTTCTTCCGGGTGTGCTAAGTCTACCTCCACGTGACTGATATATCTGCTTATAGTAATGTCAACAAACTGTATCATGATAAATGGAGACGGGGACGAGGAGTTCACGGGCTTCGTGGCCCTACACGGCGGGGCCCTGCAGTCCTCAGGACTCCCCCCAATCTACTGGAGGAGCCTCCATCACAAAATCTCGAACGAGATTTATGATGCTGGGGAAGTTTTCGGAATCATGCAGTTTCAACAAGAAGACAACGACGAGGAGGAAACTGGGGGTAacgaggagaggaagagggacaATCGTGTAGCAGTGATGAGCAGTAAAGTGGTTGTGACCCGGGAGAGTGGACTGCAAGCCTCAGAGCCGTCCAGTGTTTTTCTGGTGGATCACGCCTGGACGTACCGCGTGGACCAAAGCCGCCAGCAGCTGGAGCAGATCCCCGGCCTGCTGCACAGAATGGCCGCGCTCATGGGGGTGGACTTCCACGGCGAGGCCCCTGACCCAGACACGGTGGAGCTGGTGATGGAGCACATGTGGAAGTACAACCAGACTTACAAACTCTCCCAGGGGTCTCCAGAGGACAAAGTTCCAGTGTGGTACATCATGGATGAGTTTGGCTCCCAGGTGCAGCACTCTGACCAGCCCAGCTGCGGCATGGCTCCCTTCTTCTACATCCCGGGCATGCTGGCCTACTCTGTGCTCTGGCCTCTGCAGGACCTGCAGGAAGGAGATGAAGTAACCCGTGACTATGCGTATGGAGAGACGGACCCCCTGGTGAGGCGATGCCGTCTGTTACCATGGATACCTGCTGACCTAGAAGGGGTCAGCAGTGTCACCACTGAGCCTCTGGACTCCTACTACGAGGCCATAATATCGGAGATTAAGGAGCAGCTTCCTGTGGAAATCCAACCCTACAGTGTGCCAGAGGACAAAATCCTAAAGGTTTACTCCGACATGTCCCAAGTAACAAACAACCTGACCCATCCACGGTTCCAGCTGACGGAGGACAAAGAGGAGGCTGATGTCATTTGGAGCTATAATCACATCAAAGACTACAGAAAGCTAAGCGAGGAACAACCTCATGTGATGCTGAACCAGTTTCCCTGTGAGAGCGTCATCACTGTGAAGGACTGCATGGCTGCTGTGGCCCGCAGAGTGAAAGGGGGCCCACAACCTGATTGGCTGCCAAAGACCTTCAACCTCCAGTCAGAGCTCCCACAGTTCATCAAGTGTTATCAACTGAGACAACAAAGGGAAGAAGATAACCACTGGATCTGTAAGCCGTGGAACTTGGCCCGTGGACTGGACACACACATTACCAACAACCTAGACTACATAATCAGACAACGAGAGAGTACACCAAAGGTTGTGTGTAAGTACCTTGAAGATCCAGTGCTCTTCAACAGAGAGGAGGTGGGAATGGTGAAGTTTGACATTCGCTACATGCTGATGTTGCGCTCCGTGCAGCCCCTGCGTCTCTATGCCTACAACGTCTTCTGGTTGCGCTTTGCTAATAGACCTTTCTCCTTGGACCGCTTTGATGATTACCAAAAGCACTTCACCGTCATGAACTATGCAGATGGTGTGGAGCTTAAGCAgGTGCACTACGATGAGTTCATCCCCATGTTTGAGAAGCAGTACCCACAGTATCCATGGAAGGAGGTAGAAGCAGAGATATTTTCCGCGTTGAAGGAGTTCTTCCAGGCAGCCTCGTCTCGACCGGCTCCGTATGGTATATGTTCCTACCCATCATCCCGGGCCATCTATGCCGTAGACCTCATGCTGAAGTGGACTACTGGGCAAAATGGTGAGCGAGTGATGCAGCCTCAGATCCTGGAGTTGAACTTCAGCCCTGACTGTGCTAGGGCCTGCCTCTACCACCCCTCCTTCTACAACCATATGTTCCAGACACTGTTCCTGGATGAGCCAGAGCACTGCCCAGTCACACAAATTGTATGATCAACTCAACATCACTGGCGAGCCACCCTGGGACCTGAGAAGTTGAAGCTGACACCTTTTATCCTGAGGGAGGGATCACCGATCCTTTATTTCGCcaaatttta

Function

GO:

id name namespace
GO:0006464 cellular protein modification process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312293 lncRNA upstream 72053 25184812 ~ 25191943 (+) True G230249
TU312222 lncRNA upstream 465255 24795953 ~ 24798741 (+) True G230192
TU312111 lncRNA upstream 778479 24482310 ~ 24485517 (+) True G230109
TU311993 lncRNA upstream 999931 24260059 ~ 24264065 (+) True G230011
TU311974 lncRNA upstream 1147875 24112965 ~ 24116121 (+) True G229994
TU312317 lncRNA downstream 2536 25351877 ~ 25352174 (+) True G230260
TU312312 lncRNA downstream 13558 25362899 ~ 25373424 (+) False LOC120553523
TU312316 lncRNA downstream 27006 25376347 ~ 25377601 (+) True G230259
TU312409 lncRNA downstream 86810 25436151 ~ 25494197 (+) False G230327
TU312407 lncRNA downstream 126458 25475799 ~ 25494197 (+) False G230327
XM_039792326.1 mRNA upstream 3646 25244537 ~ 25260350 (+) True LOC120553672
XM_039792325.1 mRNA upstream 22058 25218540 ~ 25241938 (+) True pnpla3
XM_039792316.1 mRNA upstream 150803 25019376 ~ 25113193 (+) True mpped1
XM_039792315.1 mRNA upstream 153571 25011234 ~ 25110425 (+) False mpped1
XM_039792169.1 mRNA upstream 271831 24887843 ~ 24992165 (+) False scube1
XM_039792038.1 mRNA downstream 13541 25362882 ~ 25373996 (+) True LOC120553523
XM_039792039.1 mRNA downstream 13541 25362882 ~ 25372857 (+) False LOC120553523
XM_039792040.1 mRNA downstream 19915 25369256 ~ 25373996 (+) False LOC120553523
XM_039792050.1 mRNA downstream 43091 25392432 ~ 25400207 (+) True LOC120553526
XM_039792044.1 mRNA downstream 53014 25402355 ~ 25491732 (+) False LOC120553524
TU312157 other upstream 485738 24620812 ~ 24778258 (+) True G230148
TU312075 other upstream 951058 24309936 ~ 24312938 (+) False LOC120553083
unassigned_transcript_1527 other upstream 1376572 23887337 ~ 23887424 (+) True trnay-gua_62
TU311875 other upstream 1415372 23833031 ~ 23848624 (+) False adm2a
TU312620 other downstream 688946 26038287 ~ 26046681 (+) False arhgef39
TU312731 other downstream 1023395 26372736 ~ 26381109 (+) True mrps33
TU312732 other downstream 1023395 26372736 ~ 26381109 (+) False mrps33
XR_005638128.1 other downstream 1719736 27069077 ~ 27072552 (+) False LOC120553194
TU313012 other downstream 2253664 27603005 ~ 27603702 (+) True G230842

Expression Profile