RNA id: XM_039791875.1



Basic Information


Item Value
RNA id XM_039791875.1
length 1341
RNA type mRNA
GC content 0.52
exon number 8
gene id LOC120553465
representative False

Chromosome Information


Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 24365338 ~ 24375224 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GGCCCTCTATCGGCAAGCGCCGGTGATGCAGCCGCGGCTACGCGCTGGGACTGGTCCTTTCGCAGCCATTTTCTGTCCAACCAAACAGCCGTCTCAGGAAGGTAACCAACCAGGGCTTCATTGCAGATGGACGGAGACAGCTCGACCACGGACGCCTCCCAGCTGGGCATCGCTGGAGAGTACATGGCATCCGGTCATTACGTTCTCCAGTCTCAAGATGATGACGGCGAGGAGAATCTGAATGACCACGATGACAGCGGTATCAAAGAGAACTTCAGGGAGCAGGACATCTATCTTCCTATCGCCAACGTGGCTCGCATCATGAAGAACGCCGTTCCTCAGACTGGAAAGATCGCGAAAGACGCCAAGGAGTGCGTGCAGGAGTGCGTGAGCGAGTTCATCAGCTTCATCACGTCGGAGGCGAGCGAGCGCTGCCACCAGGAGAAGAGGAAGACCATCAACGGGGAGGACATCCTGTTCGCCATGTCCACGCTGGGCTTCGACATGTACGTGGAGCCGCTGAAGCTCTACCTGCAGAAGTTCCGAGAGCAGCCTAGCTGGCAACAGACAGAGCATCAAGCAGCTGGGTTTCCAGATGGGTTGGGAACTTCAGCGACAAACTGGgccaTGAAGGGCGAGAAGGGGATCCCCGGGGTGTCGGTGGGAGAAGGCCTGGGAGATGAACTCACGGACGACAGCTTCACAAACCCACTGCCAGCTGGGATTATCACAGCAGACGGTCAGCAGCAGAACGTCATGGTGTACACCACCTCATATCAACAGATCCCCACCGTGCAGCAGATCCAGTTTTCATGACGAGACCTGAACACGGCGGCTCCTTTCACCAGGCACCGATCGGCGGGttgaccccctcccccccagggTAGAGGTTAtcagacagggagggagggagagggaggagtcTGCAGAAACCCCCTCATGTACAGAGCAATCACTACCTGTTGAGTAGAAAGTCTAGTTCCTAGTTGTGAGGTACCAAATGTTTTGGGAGTGCAGTCCAAAGCAGTTGGCAAAATTGAGGCTTTATTTTAAAGGCTAGTCTTTATGACATGATTTAGTGGTCggaatatgttttgtgtgtgttcatgtgttttgCTTTTATGCATTTAATTGATTTGCGGCgaagggtgggggtgggtggggggggaatAATGGGAAGTGTTGGATGTTTATTTTTGAACACCTCTGTGTTAACTGAGAGAAGGCACGTTGTTACTGCCACATCAGATCATGCAGCTCTTTTGTAAGTTGACACAATTTACCATGTGCTTTAATGTTATGTAAATCCTTTGAATAAAAATTCAAAAGTGATGTTTAAAA

Function


GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU312090 lncRNA downstream 49481 24315083 ~ 24315857 (-) True G230089
TU312050 lncRNA downstream 139927 24204030 ~ 24225411 (-) True G230067
XR_005638165.1 lncRNA downstream 163213 24117732 ~ 24202125 (-) True LOC120553435
TU311966 lncRNA downstream 284185 24080527 ~ 24081153 (-) True G229987
TU311929 lncRNA downstream 416558 23946497 ~ 23948780 (-) True G229952
TU312120 lncRNA upstream 103870 24479094 ~ 24479656 (-) True G230118
TU312121 lncRNA upstream 104483 24479707 ~ 24481679 (-) True G230119
TU312122 lncRNA upstream 106463 24481687 ~ 24482539 (-) True G230120
TU312123 lncRNA upstream 107391 24482615 ~ 24485522 (-) True G230121
TU312188 lncRNA upstream 194078 24569302 ~ 24571318 (-) True G230165
XM_039791667.1 mRNA downstream 80629 24256783 ~ 24284709 (-) True podxl
XM_039792024.1 mRNA downstream 255765 24066409 ~ 24109573 (-) True net1
XM_039791522.1 mRNA upstream 133552 24508776 ~ 24565806 (-) True slc41a2b
XM_039791521.1 mRNA upstream 133552 24508776 ~ 24565805 (-) False slc41a2b
XM_039791854.1 mRNA upstream 416268 24791492 ~ 24797223 (-) True LOC120553455
XM_039791858.1 mRNA upstream 422171 24797395 ~ 24826222 (-) False aldh1l2
XM_039791859.1 mRNA upstream 422171 24797395 ~ 24823837 (-) True aldh1l2
TU311926 other downstream 450646 23908556 ~ 23914692 (-) True G229950
TU311924 other downstream 450646 23912101 ~ 23914692 (-) False G229950
TU311825 other downstream 653543 23692021 ~ 23711795 (-) True LOC120553170
TU311851 other downstream 665140 23699697 ~ 23700198 (-) True G229907
TU311637 other downstream 1125765 23104760 ~ 23239573 (-) True G229716
unassigned_transcript_1528 other upstream 201726 24576950 ~ 24577021 (-) True trnap-agg_20
XR_005638196.1 other upstream 816559 25191783 ~ 25217693 (-) False sult4a1
TU312561 other upstream 1220356 25595580 ~ 25601366 (-) False LOC120553115
TU312668 other upstream 1805327 26180551 ~ 26196487 (-) False mkrn1
TU312734 other upstream 2000468 26375692 ~ 26381365 (-) True G230594

Expression Profile