RNA id: XM_039791890.1


Basic Information

Item Value
RNA id XM_039791890.1
length 5210
RNA type mRNA
GC content 0.49
exon number 24
gene id zgc:113263
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 14119739 ~ 14160069 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tttccatagatatatatacatttCGGCCAGATTTTGCTCTACCGCGGCCACGCAAAACTACTAAGAACTTTGGAAGGTTACCGACGTTATGTATAATGTCTCTTAAATAAGTAACGTAAGTGATATAAGTAGacggtacttttttttttttcaggcttcTTTTTGTGGCCTGTTAATATAAAATGGAAAGACAATTGCGCCATCTAGCGTTGTAAAATCTGCATTGCCCGGTTGATCCGGTCTTCGTCAGCCAACCCGGAAAGAGGGCTTGCCGGGATCTGGACTGAGGCGGATGAGACCAGAAACCTttgttctgtctctcctcccAAAAGCGAGATTTAAAAACAAGAGCCTGTCAATGCTTCCTGCAAAATTGCGCTCGCGTTTGTGTTGGTGGGCAATCGGCGATTAATGTTTTATGAATCAGAAATTAGCCGAATCTATTCATTAGGCTTtctaatatttttttctgatcGCTACAACCCGAGGGGGACATCTGCTCGTTTTTTTCTGTCTGCTTCTAAATGGAAATAAAACGGGGAGCTGAAAGTGGAAGCAGTCGAGGTAATGATCTTCCAGTCCACTATCTTCGCCTCCTGGCCCCGCCCTTGCAGCTTTTATCAGCTGCAGTGTGGCAAGTAGTGCAGCAGGGACTTGTGGACCACTACGGGATGCTGGAGGAgtttgttaccatggtgacagAACTGGTCCCAGAGCTGATGAGCTACAGTCAGAGGGCTCAGCTCATCCTGGGACTCAGGGCCAGGcttgtTCTGGAGATGTGTCGAGGTGAGCACCCAGTGGACATGCAGACCATTCAGCCACATTTGGACAGAATTAAAGCCCCTGTCAGCACTGCCAAGGATCACCATCTAACCATAAACCAGGTGGAGGAATCTGAGGTGAACTTTGTGGAGTTGGTGCATTCATTACTGGAGGATCCCTCggaaagaaaatatttttttcagGAAATCTTCCCTGTGTATTTTGGCTCGAAGTATGACGCTGCACTCGAGATGCTGGTGTGGGAGTTCATATCAAGACTGAAGGAGCTGCTGCCAGTTCCAGACTTCACACAGTTGGCAGCTTTGCTCGGAGATGCTCCGTCATTCCTCGATGACTGTTTACAATCCTTTTTCCCGCCAGAGGACATGAAGGCTGTACTTGAACACCACAGAAACCTTGGTTATTTTGAAGAGAAAGATCCTAGATTATTACCGATGGATGACTGCATCCTCTCCTCCCTGTCTCTGCCTCCTGGGACCAAACCTGTCATCAGCACCACCTCTTGCTCACCTGCTCTCAAAGATTCAAACCCTCTAGAGCACAAAGGACGTCTCGACACTCCCTACAACACAAGCGGCCTGGAGAGGGCGAGCAGGAGGACCTCTGAGACAGTTAGACAAAGACTAAATGAGACAAGAGACTCGGGCGGCTGGCAGCTGCAGGTTAGAGGCGGGAACATTTCACAGGAGAGGACAGTGCAAAGCTCAGTTAGTGCACGACCATGTGATGACACCATAGACCTCACTACGTCTGAGACTGCAGACACAAATTCAGCAGCCAACGACAACAGCCAAAGCTTGAGAGGAGGACGGGTTCTCAGGAAGAGGAAGCTGAGCGGAGGCGTAGACATTCCCACAAAGCAGCCTTTGGAGGCGACGGCTTACCTGGATTCGTCAGTGGATGATGAGAATTCAGCTGAATCCCCTCTAATCTCAATATGGGGAGAATATACAGACACTCAGGAAGGTTCTTTCCCAGTTGTGACGGACACAAAAGTTCCCTGGTCGGACGAGGAGACGCTCACTCTGCTCGACATCTGGGGGAAGGACTCGGTGCAGCGGGCCTTGAAGGGCTGCTTGAAAAACCGTCACATATTCACGCAGATCGCTCAGAAGATGGCTGAGAGAGGCTACATGAGAACGGTGGAACAGTGCCAGACCAGGATCAAACGACTGAAAAAATGCTTTCGCAAGAAAAACAAGGGGAACTCCAGGCTAGAGTATAAATTTTACGAGCAGCTGAAGCGGGTGCTGGACTCCTCCGCTCCCTCAGATCTTCCCGAGGTCACCTATGACGTCGAAGAGGTCATGGGTGACGACGAGTCCCCAGACGGCGAGGAGGACTTGCAGTTTCTCGGCCATACGAGCCGACCGGAAATCGGCACTAGAAGTGTTCCGTGGACCGACTTTGAGACGTTGGCCCTCATCTACTTGTGGGGGGAAGACGAGATGCAACAGGAGCTGAAAGGAATGCATAGAACCGGACACATTTTCTCCATCATATCCAACAAGATGGCCGCCCAGGGCTTCTCCCGAACACCAGAGCAGTGCCAAACAAGGCTGAAAAGGCTGAAATCAAATTTCAGGCAGTGCTACCAAAACAACCTGAAGGGACAGGAGCACGTTGAGTGCAAGTTTTACCACGAACTGGGAAGCATTTTAGTGAAGGACTTCCTTTCAGCGCCGCAGCTGGAGGAAATCCCAGGGGACCCTGAAGACAACGACCCGTCTGTCTCCCATCAGGCTATCGAGTCTGCTGTGGGCGTTCAGGAAGACAGGAGGAAAGTCCCCTGGTCGGACAAAGAGACCATCATCCTTCTGGAGATCTGGGGAGACCCACAGGTCCAGCAGAGCATGAGACGCTACCCACACAACGGTCACATTTTCACCGAAATATCAGAGAAACTGGGCGCCAACGGCTTCTCCCGCAGCGCAGAGCAGTGCCACACCCGGATCAAGCGGCTGAAAGCCAACTATCGGCAGTGTCAGGAAAACATGAGCTCATCCGGGACTGACCGAGTCGACTTTAAATTCTATGATCTCCTGGAACAAATCCTGGACAAGCAGCCGTCCACATCTTCCACCGTGGTAACAGACTCCATTGAAATATCAGAAGACTCCAATGGTGAATCACTGACTGAGACAGAAGGAGAAATCGGCGTGTCAACAGAAAAAGCGGCACACAGCTCGTGGTCCGACGAGGAGACCCTGGCGCTTATCGAGATCTGGGGCGACGAAGACGTTCAGAGGGCACTGAGGGGTTTTGTCCACAACGGACACATTTACGCCGACATTTCGGAGAGAATGCGCACTCTCTGCTACTCGAAGACCTCGGAGCAGTGCCGCTGGAAAGTCAAGTCACTGAGGAACAACTTCCGACAGTGTTACGACAGGAAGAAATGTGGAAGAAGAGTAGATTATAGATTTTACCACCAGCTGGAACAAATACTGGGACATGAGGCAGTTTCTATTGATGAGTATGACGAAAGAGAAGAGCAAGCAGACCAGGATCCAGGTGCAGATGGTGTGAACGCAGCATGGACGGAGCAGGAGACGGTCGCTCTCGTTGAGGTGTGGGCTGCCGACGACGTGCAGGACAGCCTGAAAACCTGTGTCCGCAACGGGCACATATTCGCCGACATATCAGAGAAAATGGGTGCCATGGGATACCTGAGGACGGCAGAGCAGTGCCACTCCCGGATCAAAAGGTTGAAGAAGAGTTACAGGCGTTACTGCAACAGCCGGAGAAGTGGAGGACGGCCCACTGTGTTTCGATACTTCACCCTGCTGGCTCCGGTGCTCGGTGACTCTGTGTGCGCTGATGTGGACAGTACTGCTGCTGACACCGCCTCGCAAACCCTTATGGACCTTAAGGATCCTGACATGTACGAGCAGCCGTCAGCCAGCCACCTCAAGGCCGACCTGAGCAAGAAGACGCCCTGGTCGGACCAGGAGACCCGCACGCTGCTGCAGATCTGGGGTGAAGACAACGTCCAGCTCACCCTGAGGGGCTGCCTGAAGAACCGCCACGTGTTTGAGTACATCTCTGAGAAGATGAGTGACGAGGGATTCATGAGGACCTCCGAGCAGTGCTACACCCGCATTAAGCGCCTTAAACATGGATTCCTCCATGAAAAGGAGGAATATAAATTCTTCAGTGAGATGGATGAAATTTTCAGGAGGGAGCTGAAAGTGGACGGCTCAGTCGCAGACACATCAGTCACAGATGAGCCGGATGACTGCAGTCAAACGAAAGATGCCTCGGGTACCCAGTGGGTGGCTGACAGCTCGAAGCTGGTCTGGAGCGACGGGGAGACCGAGGCCCTCCTGGACATATGGGGGAGCGAGGCCATCCAGGAGACCTTGAAGGGATGCACCAAGAACAAACACATCTTCATCCAGATCTCTGAGGTCATGGCCAACCAGGGCTACATACGCACTCCTGAACAGTGTCAGACCAGAATAAAGAGGCTGAGGGCCAATTTCCGACACTTCTTAGAAGGCAGAAAAGGAGAGAAACAAGAATGCAAGTTCTTTGACCAGTTGGTGCAGATATTCGGCAGCAAGTATGTAACAAACTCCGACCCCCTGGCCGAGGATGCAGCCGATGGCGTAGAGAACTGAAACTGTCCCTCATCGTTGAGTCAAATCACGCGGAGGACACAGCAGCTGCGTATTGACAGAGGGACAGCCAGACAGGAAGTAAACCAGGACACTCAAACAGCTGTGGTGTAAAGTTGTTTACAGATGACATTTGCCTCTGTACATACTTCAGATACTTTTACATTCTtcaaacactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatttacaATAGAGCCATGCCACTAAAACCAGGAAGCTCAGGGCTTGAGGGACAAAAATGAATCTCTGATCTTGACCTGGTGGGAGTctagaaaacatgtttttgctagtatttaattattttgtaCTTGAACTAAGAGTGAGTAAATCAAAGCACACGCAAAAAGAAATACACGCAAGGCCTCTGACTGTAACCACAGcgtacatttgttttttgtcttacTTCAGGTCTCACTTCTtaaatgttttgtctttgtacttgtttACAATGTTTGAAATCTGAGTGGTAAGTTTAATTCATAAAGCTAATCCTTATTTTTTACATGGTATGAGTTGATCTTGTCcagaatttaatttatttaaattattgttTACGTATGTGTTACAAAGTTTTACAATTTACCCTAAATATGTTACACTTCAAACGTTATTGAAGcatattttttccacaaacaTGTCAAAGGTTTTGTCAAACCCATTAAAAGAAACTTGAAATGTTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309070 lncRNA downstream 169858 13949541 ~ 13949881 (-) True G227784
TU308952 lncRNA downstream 318236 13797584 ~ 13801503 (-) True G227717
TU308915 lncRNA downstream 384037 13729477 ~ 13735702 (-) True G227692
XR_005638171.1 lncRNA downstream 465828 13643583 ~ 13653911 (-) False LOC120553486
TU309104 lncRNA upstream 3115 14140179 ~ 14143259 (-) True G227804
XR_005638083.1 lncRNA upstream 41681 14178745 ~ 14219598 (-) True LOC120553016
TU309112 lncRNA upstream 41708 14178772 ~ 14180506 (-) False LOC120553016
TU309114 lncRNA upstream 94479 14231543 ~ 14231806 (-) True G227814
TU309249 lncRNA upstream 287173 14424237 ~ 14426492 (-) False waslb
XM_039791914.1 mRNA downstream 13619 14053566 ~ 14106120 (-) False ptpn12
XM_039792054.1 mRNA upstream 104933 14241997 ~ 14262260 (-) True rassf8b
XM_039792313.1 mRNA upstream 139788 14276852 ~ 14290030 (-) True pkp2
XM_039792314.1 mRNA upstream 139788 14276852 ~ 14290029 (-) False pkp2
XM_039792037.1 mRNA upstream 153758 14290822 ~ 14309611 (-) True nudt4b
XM_039791292.1 mRNA upstream 189033 14326097 ~ 14333939 (-) True ube2nb
unassigned_transcript_1491 other downstream 310060 13809607 ~ 13809679 (-) True trnak-cuu_13
TU308919 other downstream 460467 13651662 ~ 13659272 (-) True LOC120553486
TU308872 other downstream 589961 13520265 ~ 13529778 (-) False LOC120553470
TU308500 other downstream 1831585 12284926 ~ 12288154 (-) True G227429
XR_005638137.1 other downstream 2270798 11838944 ~ 11848941 (-) False cracr2ab
TU309376 other upstream 922939 15060003 ~ 15061429 (-) False znf800b
TU309380 other upstream 925199 15062263 ~ 15088329 (-) False znf800b
TU309610 other upstream 1634174 15771238 ~ 15791853 (-) True G228191
TU309744 other upstream 2611778 16748842 ~ 16823432 (-) True G228291
TU309971 other upstream 3158058 17295122 ~ 17302198 (-) True G228465

Expression Profile