RNA id: XM_039791915.1


Basic Information

Item Value
RNA id XM_039791915.1
length 3372
RNA type mRNA
GC content 0.52
exon number 18
gene id ptpn12
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 14053566 ~ 14106120 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCAGTCCGGATGTTCCCCAGTAGCGAATAACGAGCagcagtgtgtgaatgtggcAACCGAGGTAGACAGGGAGGGGTAGATAGACTGACCAGATCAgggtttttgtcctttttcaatctttttattttcttacagAGCCTAGTGTTAACAGTTAATGTGACGCCACGGTTGTTAACTTGTTTGTAGACGTGAAAGCCCGGCCGCCGCTGCTTTTCTTTGGGACTACGTTAACCGTTAGCCTTGTGAAAACAGCCcagaagaaagaaggaaagggtGAAACAACATGGGgcgataataaaaaaaaaaaagaaggtgttGTGTTATGAACCGACGATGACTCTCTGGGAGGATCCGTgaagcttatttatttttaatttatttcccCTCTCCCTTTACCTtgtgtccttttttgttttatttttgaattttcTCCTCCCTTGCTGCTTTGGGaggttgtttttaaaaaaaggaaaaggcaaCGGGATACGTTACAAGAGGACTGAAGGATGGACCAAGCCGGCATCCTGAGAAAGTTTATCCAGGGGGTGAAGGCCATGAGCGAGGGGGacgaggagaggggagaggacaACTTCGGCAGCGACTTTATGCGGTTACGGAGGTTATCGACTAAATACCGGACAGAGAAGATCTACCCCACCAACgtgggagagagggaagagaataTCAAGAAGAACAGATACAAAGATATACTGCCATTCGATCACACTAGGGTGAAGCTGACATTAAAAACGACCAATCAGGACACAGATTACGTCAATGCAAACTTtatcaagGGTATAGATGGCCCAGAGGCCTATATTGCAACTCAGGGCCCACTGCAGAACACTGTCATCGACTTCTGGAGGATGAACTGGGAGTACAATGTAGCTgTTATTGTGATGGCTTGTCGAGAGTTTGAGATGGGAAGGAAAAAGTGTGAGCGGTATTTCCCGCTGCTCGGGGAGGAGCCCATGAGTTTTGGCCCTTTCAGAATCTCCTGTGAAGCAGAGCAGGCCAGAACAGACTACTTTATCAGGACTTTGACGGTGGAGAATGAGGACGAAACTCGGAGGCTAACGCAGTTCCATTATATGAACTGGCCCGATCACGACGTCCCCTCATCGTTTGACTCCATACTGGATATGATCGGACTGATGAGAGAATATCAAGAGCATGATGATGTCCCTATATGTGTGCACTGCAGTGCCGGCTGTGGGAGGACGGGTGCTATCTGTGCTATCGACTACACGTGGAACCTCCTCAAAGCTGGGaaaataccagaagattttaatgtttttcggTTGATCCAAGAGATGAGGACGCAACGGCACTCTGCTGTTCAGACCAAGGAGCAGTATGAGTTAGTTCATAGAGCGATCGCCCAGCTCTTTGACAAACAACTGCAGCTACTGGAGAGCTCCaccaacacacagatacatgatGGCATgGATGAAAGCAGTCCAGTTAAAGCAGTCCATCAGTCGGACGATGAGAGATGGGACACACCGCCTCCAAAACCTCCCCGCATACGCAGtTCCCAGGCTGAAGGTGATGTGAAGGAGGAGATACTCCAGCCCCCGGAGCCTCACCCAGTACCCCCCATTCTGACCCCGTCTCCCCCTTCAGCCTTCCCCACCGTCACCAACGTACGGCAGGACAACGACCGCTACCACCCCAAACCTGTCATACACGTCCTGGCTACCACACAGAATAAAGAAGCAGACCAGCAGCAGAACCAGTCCGAACCCAGTCCGAACAAGCAGACCAGTCCCTCAGAGCAGAAAGACCAAGATCTACAAAGTCGAAAACAGCAGACTCCGGTCTCAAATCTAGATCTCAATGAAAACTATAACAACAAATCAACATCGACAAAATCCGAATCGGGCCAAAGCCAGACTCAGACGCCCTCCTCGCCCCTCTCGCCAGCTGTCGAATGTTCTGGCGCTCCTCGGATCGAGAGGAAGCTGAGCATTGAGATTAAAAAGGTGCCGTTACAGGAAGGACCTCGTAGTTTTgacacttcctcctccatggGAGTAGCAGGTGCACTAGGCAGCAGTTCAGCCAATAGCGCAGGAGTGCTGCAAAGAGCCCACGCCTTCAAAGCCCGTTCTGGCCAGTCCCTGCTGACGTCTAGCTCCTCGCTGTCAGAGGACTCGGGCACGGAGGGGGGAGCGGCCGGATGTGGGGAGAGTCATGCAGACGGAGGCGTCCTAGCCAGACCAAACCACCTCCCCGTGAAGAACCAGAAGGGGGAGACGCATGGAGCGGAGAAAGTGGAGGTGAAGGCCGGCCACGCGTTGTGGGCTCAGGCCTGCAACAGCCCCGACAAACAGATCCCCAAAACCTCCTCTTCGTCTTCCTCTTCAGACCGCGTggctccatcctcctcctcctcctcccacctctcctcctcctcttcctcctcctcctctactcCCGTTAGGACTGCCCTTAGCTTCACCAACCCCCTGCACTCCGATAACTCGGACGAGGAGGGGGATGTAGAGATGTCCGGGGGAAAGGAGGGTTATCGTACTAATGTGTCCATGGTGACGGCCATGGTTACCGCATCCCCTCACCACGGAGACCAGCAGTCCGTCCGGAAGGTGTTGCCCATGTCGATCGCAGGGCAGAGCACTCCGTCACCCTCGGCCACCACAGCAAACTGCTGGGACAGCGATgactcccctccccccctccctgcgAGAACTCCTGAGTCCTTCCTACTGGCCACAGACCCCATGGAAGTGAAAACGTCGACCTTGGCTGAATGGAGTGGAAATAAAGatgTGTCGGAGTGTGTTAAGAAGACATCTCCGGCTGACCCTGCATCCGCTGGCACCACGGCAACAGACAGCAAGGCAGACCTGGGTGGGGTTCGGTAACCGCTGCATTCAGCCCAAAGGCCCTCGGGAACCCCCCCTGGAGTGGACATGATGGGATCCTCCATCTGCCCGTCCACCAACAGTGCCCTCCCTTTGTCAGGAGATGGACTCTACCCGATCTCCCCTGGCTGGTCCAAAAACCTAGATGATAGATGCTCCACAGACAGAGAGCACAATGTTACATAGAACCACCTTTCTGTGTAACGCTGTGTCACACCTCCTCCTCAGTCCTTCCGTCAAAGTGCCACTGTGCAAAGCAGAAGAACACTTACTGGTCAGCTGTCCACGTTTCCCTTTCCAGCTTGCTCACTTCTCTAGACTCTGACCTGGGATCAGTCTGGTTATTTTCCTGTTAATGGTTAAAGAATAATTCCTGTTTTTGGTGACTTGAGAGTAGATAAAAGAAAGGGATGTAGATGTAACCCttacgtgtaaaaaaaaacaaacattttctttcatgccaaatgagggaaaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K18024 PTPN12_18_22; tyrosine-protein phosphatase non-receptor type 12/18/22

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309070 lncRNA downstream 103685 13949541 ~ 13949881 (-) True G227784
TU308952 lncRNA downstream 252063 13797584 ~ 13801503 (-) True G227717
TU308915 lncRNA downstream 317864 13729477 ~ 13735702 (-) True G227692
XR_005638171.1 lncRNA downstream 399655 13643583 ~ 13653911 (-) False LOC120553486
TU309104 lncRNA upstream 34059 14140179 ~ 14143259 (-) True G227804
XR_005638083.1 lncRNA upstream 72625 14178745 ~ 14219598 (-) True LOC120553016
TU309112 lncRNA upstream 72652 14178772 ~ 14180506 (-) False LOC120553016
TU309114 lncRNA upstream 125423 14231543 ~ 14231806 (-) True G227814
TU309249 lncRNA upstream 318117 14424237 ~ 14426492 (-) False waslb
XM_039791885.1 mRNA downstream 5902 14008717 ~ 14047664 (-) True LOC120553471
XM_039791920.1 mRNA downstream 51582 13956660 ~ 14001984 (-) False LOC120553476
XM_039791919.1 mRNA downstream 51582 13956660 ~ 14001984 (-) True LOC120553476
XM_039791922.1 mRNA downstream 51583 13956660 ~ 14001983 (-) False LOC120553476
XM_039791934.1 mRNA downstream 187067 13862779 ~ 13866499 (-) True fbxl14b
XM_039791891.1 mRNA upstream 13619 14119739 ~ 14160069 (-) False zgc:113263
XM_039791887.1 mRNA upstream 13619 14119739 ~ 14137066 (-) False zgc:113263
XM_039791888.1 mRNA upstream 13619 14119739 ~ 14137065 (-) False zgc:113263
XM_039791886.1 mRNA upstream 13619 14119739 ~ 14137065 (-) True zgc:113263
XM_039791890.1 mRNA upstream 13619 14119739 ~ 14137064 (-) False zgc:113263
unassigned_transcript_1491 other downstream 243887 13809607 ~ 13809679 (-) True trnak-cuu_13
TU308919 other downstream 394294 13651662 ~ 13659272 (-) True LOC120553486
TU308872 other downstream 523788 13520265 ~ 13529778 (-) False LOC120553470
TU308500 other downstream 1765412 12284926 ~ 12288154 (-) True G227429
XR_005638137.1 other downstream 2204625 11838944 ~ 11848941 (-) False cracr2ab
TU309376 other upstream 953883 15060003 ~ 15061429 (-) False znf800b
TU309380 other upstream 956143 15062263 ~ 15088329 (-) False znf800b
TU309610 other upstream 1665118 15771238 ~ 15791853 (-) True G228191
TU309744 other upstream 2642722 16748842 ~ 16823432 (-) True G228291
TU309971 other upstream 3189002 17295122 ~ 17302198 (-) True G228465

Expression Profile