RNA id: XM_039791924.1


Basic Information

Item Value
RNA id XM_039791924.1
length 3043
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC120553477
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 14160077 ~ 14167596 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACATACTCCACTTCAGTCCAGTTGGTGGCGTATGCACCTCCAGTTGGTTTGCCAagaagaagacgaagaagaagaagacgcagaagaagacaacaaaaacaacatgggTGCTAGTTTTGGAGAGAGATTGTGCGAAGAGGTCCGTCGTTACCCACATTTATATGATAGGTCTGTTAAGGAGTACAACGACAGCCAAATGACGTTAAACTCCTGGCAACAAATCGCTCAAACTCTTGGGAAAAGTGAAACAGCCTGCCGTCAAAAGTGGAGAAGTCTGCGAGACAGATATGTAAAGGCCAAGAAAAAGCTGAAAGGCGGGAGCAGCAAAACCGGCCGGATTGCCTACATTATCTCCATGTTAGACTGGCTCTCTGGCTTCGTCAAGCATCGTTCCACGGAGGAGACGCGGTCGCGGACCCTTAACTGTAGTATGGCTGTCACCGCGTGCACGAAACCCGCACAAGTACGCAGCTGTCCGTGGAACGCGGAAAATCCTCATCTCCCTCTGTCATCCGTGCGCCTCCTGGTTCCTCCTCTGAGGTTGATGTCAGCCTGTATGTGGCAGGTGGCCCAGGAGCGGAATGTAGACCAGTATGACAAACTGGCCGAATTCATCATCTTGGTGACAGAGATGGTCCCAGAGCTTCTGGACTACAAACAGAAGACTCAGCTGATCCTGGGACTGAGAGCTCGGctCATCCTTGAGTTATTAAAGACGATGGATGAGGTTGACTGTAAAGCTATCCAGGGTCATCTTAACAGTTTCCAACAGACGACAACAAACCTCATGCATGAAGAGGACCCAGATGGAGAGGTGGTGACTTCAAAGTCAGCATTTGTGGAGCTGGTTCAAACATTGCTTGAAGACCAATCTGAAAAAGAGAATTTTTTCAAGGAGGTCTTCCCAGTACAGTATGGAGCTTGTTTTGATACAGCGCTGCAGATTCTGGTGTGGGAGTTCTTCCACCGACTGGAAGAGTTCCTCCCAGTTCCACGTTTTTCACAGGTGTGCTCCATGTTTGACATTTCTTCCCTTGACGAGGAGTTTGGGCAGTTTCTCTCCGACCCTGAGGATCTGAAGAAGATTTTGCAGCACCAACAGGAGCGACAAAAGTTGACTAAAAGTGAATTCACCTTCATGTCAGACACCATCCTCTCCACGCTCTCCTCTAAACAGACTTCACCGACATCTGAAGATCAGGATCAAATAATGGATCAGGGAGAGGGCAAACAAGGCACTGGGAAATCACAGGGAAGAAATCGAGAGAAGTCAGTACAGACGACAGTGAAGCAAGAAAACAGCTGGAGAGCAGAAGATCTTTGTGAGGATGATGAAGAGACTGACAACAGTTCCGTTGAACCAGACTGTGGGCTGCCTGAGTACGGACTGTCACCCCTCACTTCCTCTCCATGTTCAGAAGAAGCTGCAGAGCCAGGTGATGATGCTGTTGAAGCCACCTTTCAGCCATCAGAAGAGAGCAGGATCCAGTCCTTGACAGGAGGCAGAGCCGATGTCTCTCTTCCATTCAGCGAGGACTCCGTAAGAGCCAATGACAACACACTGGAGTGTGGACAAACCTTTGCGTCTCGTTCCACCTTGAAACAACATCCCCTTGTTCACACTTCTGCACGACCATTCAAGTGCACTCAGTGCGACAAGACCTATAAAAGCCGTAAAGACCTGAGCTTTCATCTTCGTATTCACTCTAACCCTAAAGCCCATCCCTGTAGCCTTTGTGAGAAGAAATATAGTTATAAGACTGGGCTTAAAGTTCATCTGCGTCGTCACAGCGGAGAGAGGCCATTTGGCTGCTCGTACTGCGGCAAGAGGTTCTTTAGTAATACAGATTTGAAGTCACATGTGCGCATTCACACCGGTGAGCGGCCGTATGCCTGTACTTTTTGTGACAAGAGATTCACACAGCCATATATGCTCACTGTGCACATCAGGATTCATAAGAAAGAGAAGCCGTATCTTTGCAGCACATGTGGTATGTCTTTTCGTAGCTCTGGGGCCTTACGGGtgcacacacgcaagcacacaggGGAGCGGCCTAGTCAGTGTGACATCTGTGGAAAAGGTTTTGCCACAGCCATACAGTTGACACAACATCGGCGattccacacaggagagaggcCGTATTCTTGCTCACAATGTGACAAATCGTTCCACCAGAGTACAGgactgaagagacacatgaggacACACACGGGAGATAAACCTTACCAGTGTTTAACATGTCACAAGACCTTTTCTGAAAAATCCAACATGAGGATACACCTCAAGGTCCATAAGAACATCTAGCATGCTGTTGCGACATTTGGAGAATGTATATTTAGTGATAAAGAAAAGCCTGGTTCATTTCTACGCCAGGGCACGCTGTTTTGGTGCATTTCCATGACCGTAAAACACCAACATGTATATAAATTTTGGCCCGAACACTCAAATGTTGCACGTGTGGAATAATGCGTACCTTGTGTTTTAGGAGACCATTAGATAATTAGCGTAGTTACTGTAGGTTAAAGACTTCTGAATAAAATATGCCGACAATATATACCAAAGTGAAGGAGTGCCCACACTTGTGAGATAGTATGAGAAGTGTGTGGCTTAGAAATAGTGATCCTTTTTAACATGAGAACGTGAATGAATGTGTCTTTGGGCcagtaaatatattttctttaccCAACCcataaacatctttgataagATTTCTGTCTATTATTTAACAATTGCAACCAAGAAATGTAATGGGCATGTTATTTTACAGCTGACAAATAACTACTCCTGTGGAAAAACTGTATAATGGGGACATTGTTGAAGATACATATTTGGCCTTTGTCATTTATTGACTGGCATCTGTCGTGATACAAATATATCTGCAATTTTCATTTCTTTGTAGATTTCTTTATAAAAAGGTCTGTGTGCGTTTTAAGCTGTGCAAAGAGATAACAAAAAACCCTAACAAATGAAATCTCAACAGAAAGTGTGTGCAATTATCTATGTaaatcaaatattaaatgatgAAATTCACTTAGGACTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638172.1 lncRNA upstream 43741 14115743 ~ 14116336 (+) True LOC120553487
TU308995 lncRNA upstream 105853 14016098 ~ 14054224 (+) False G227743
TU308988 lncRNA upstream 105853 14050419 ~ 14054224 (+) True G227743
TU308986 lncRNA upstream 113092 14032395 ~ 14046985 (+) True G227742
TU308980 lncRNA upstream 190390 13967543 ~ 13969687 (+) True G227736
TU309111 lncRNA downstream 51713 14219309 ~ 14219604 (+) True G227811
TU309146 lncRNA downstream 158541 14326137 ~ 14333923 (+) True G227843
TU309181 lncRNA downstream 207223 14374819 ~ 14375465 (+) True G227874
TU309182 lncRNA downstream 209268 14376864 ~ 14378694 (+) True G227875
TU309214 lncRNA downstream 259505 14427101 ~ 14427328 (+) True G227895
XM_039791927.1 mRNA upstream 89 14144781 ~ 14159988 (+) True LOC120553478
XM_039791929.1 mRNA upstream 9473 14144784 ~ 14150604 (+) False LOC120553478
XM_039791930.1 mRNA upstream 9473 14144784 ~ 14150604 (+) False LOC120553478
XM_039791932.1 mRNA upstream 9473 14144784 ~ 14150604 (+) False LOC120553478
XM_039791928.1 mRNA upstream 9473 14144787 ~ 14150604 (+) False LOC120553478
XM_039791616.1 mRNA downstream 200324 14367920 ~ 14374654 (+) True ints13
XM_039791674.1 mRNA downstream 230127 14397723 ~ 14413015 (+) False asb15b
XM_039791676.1 mRNA downstream 236782 14404378 ~ 14413015 (+) False asb15b
XM_039791675.1 mRNA downstream 239277 14406873 ~ 14413015 (+) True asb15b
XM_039791678.1 mRNA downstream 245947 14413543 ~ 14420959 (+) True lmod2b
TU309000 other upstream 155184 14002363 ~ 14004893 (+) False LOC120553485
TU309001 other upstream 155228 14002363 ~ 14004849 (+) False LOC120553485
unassigned_transcript_1494 other upstream 325076 13834929 ~ 13835001 (+) True trnak-cuu_14
unassigned_transcript_1493 other upstream 325746 13834221 ~ 13834331 (+) True trnal-caa_24
unassigned_transcript_1492 other upstream 326928 13833039 ~ 13833149 (+) True trnal-caa_23
XR_005638140.1 other downstream 1001008 15168604 ~ 15197830 (+) False LOC120553256
XR_005638118.1 other downstream 2603462 16771058 ~ 16831243 (+) False cald1a
XR_005638117.1 other downstream 2603466 16771062 ~ 16831243 (+) False cald1a
TU309802 other downstream 2752067 16919663 ~ 16922823 (+) True G228335
unassigned_transcript_1495 other downstream 3422495 17590091 ~ 17590163 (+) True trnak-cuu_15

Expression Profile