RNA id: XM_039791928.1


Basic Information

Item Value
RNA id XM_039791928.1
length 2967
RNA type mRNA
GC content 0.47
exon number 8
gene id LOC120553478
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 14144781 ~ 14159988 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCGTTTTTAGAGGAAAATTGTAATTTCTTTGACAATATGTTTACACCACCTGTCAGGAGCCctcttgcgtgtgtgtgtgcaacttCTTGCTTTCCATTCTCTTCAAGTCAGCAAAAGGCCAAACGAGATGTAAATTTTTGATTAgtctgcagacagacacatgtaACAGTTATAACTGCAATGCTTAGAAGTGCCACAAGGCGGTGCCTACCTTTGTTATTGTTGTGATGCACTAGTGTGAAGACGCGCTGCAGCAGTGTTCTCTCCTCGGACCATTGCCTGTAAAATTAATATTAACAATCTATGCCTTGGACTCAGACTGACACATCACGAGAGACTTCACTTAAGAGTTAGTGCAGGTTATCCTATATGTTCTACTGCTCATGTATGATAGGTAAATATAGCGCCGTGGAGACCTGGCATTGTATGGTCCATGTTGTAGAATAAAGCATCAGTGTTGAAGCTCCGTTCAGTTGTCCGTGGACTCTTTGAGCTCATCGACTATCTCTGAGCTCCTCTGAGCTCACGTTAGCTAGCTCTCTCCACCTACACCAACATACTCCACTTCAGTCCAGTTGGTGGCGTATGCACCTCCAGTTGGTTTGCCAagaagaagacgaagaagaagacaacaacaaaaataacatgggTGCTAGTTTTGAAGAGAAATTGTGCGAAGAGGTCCGCCGTTACCCACATTTATATGATAGGTCTGTTAAGGAGTACAACGACAGAAAAATCTCCTTAAACTCCTGGCGACAAATCGCTCAAACTCTTGGGAAAAGTGAAACAGCCTGCCGTCAAAAGTGGAAAAGTCTGCGAGACAGATATGTAAAGGCCAAGACAAGGCGGAAAGGCGGGAGCAGCAAAACCGGCCGGAGGGCCTACATTATCTCCATGTTAGACTGGCTCTCTGGCTTCATCAAGCATCGTTCCACGGAGGAGACGCGGTCACGGACCCTTAACTGTAGTATGGCTGTCACCGCGTGCACGAAACCCGCACAAGTACGCAGCTGTCCGTGGAACGCGGAAAATCCTCATCTCCCTCTGTCATCCGTGCGCCTCCTGGTTCCTCCTCTGAGGTTGATGTCAGCCTGTATGTGGCAGGTGGCCCAGGAGCGGAATGTAGACCAGTATGACAAACTGGCCGAATTCATCATCTTGGTGACAGAGATGGTCCCAGAGCTTCTGGACTACAAACAGAAGACTCAGCTGATCCTGGGACTGAGCGCTCGGctCATCCTTGAGTTATTAAAGACGATGGATGAGGTTGACTGTAAAGCTATCCAGGATCATCTTAACAGTTTCCAACAGACAACAAACCTCATTCATGAAGAGGACCCAGATGGAGAGGTGGAGACTTCAAAGTCAGCATTTGTGGAGCTGGTTCAAACATTGCTTGAAGACCAATCTGAAAAAGAGAATTTTTTCAAGGAGGTCTTCCCAGTACAGTATGGAGCTTGTTTTGATAAAACGCTGCAGATTCAGGTGTGGGAGTTCTTCCACCGACTGGAAGAGTTCCTCCCAGTTCCACGTTTTTCACAGGTGTGCTCCATGTTTGACATTTCTTCCCTTGACGAGGAGTTTGAGCAGTTTCTCTCCGACCCTGAGGATCTGAAGAGGATTTTGCAGCACCAACAGGAGCGACAAAAGTTGACTAAAAGTGAATTCACCATGTCAGACACCATCCTCTCCACGCTCGCCTCTAAACAGACTTCACCGACATCTGAAGATCAGGATCAAATAATGGATCAGGGAGAGGGCAAACAAGGCACTGGGAAATCACAGGGAAGAAATCGAGAGAAGTCAGTACAGACGACAGTTAAGCAAGAAAACAGATGGAGAGCAGAAGATCTTTGTGAGGATGATGAAGAGACTGACAACAGTTCCATTGAACCAAACTGTGGGCTGCCTGAGTACGGACTGTCACCCCTCACTTCCTCTCCATGTTCAGAAGCTGCAGAGCCAGGTGATGGTGAAACAGCTGTTGAAGCCACCTTTCAACCATCAGAAGAGAGCAGGATCCAGTCCTTGACAGGAGGCAGAGCCGATGTCTCTCTTCCATTCAGCGAGGACTCCGTAAGAGCCAATGACAACACACTGGAGTGTGGACAAACCTTTGCGTCTCGTTCCACCTTGAAACAACATCCCCTTGTTCACACTTCTGCACGACCATTCAAGTGCACTCAGTGCGACAAGACCTATAAACACCGTAAAGACCTGAACTCTCATCTTAATTTTCACTCTAACCCTAAAGCCCATCCCTGTAGCCTTTGTGAGAAGAAATATCCTTCGAAGTATGCGCTTAAAGCTCATCTGCGTCGTCACAGCGGAGAGAGGCCATTTGACTGCTCGTACTGCGACAAGAGGTTCTTTAGTATTACAGATTTGAAGTTCCATGTGCGCATTCACACCGGTGAGCGGCCGTATGCCTGTACTTTTTGTGACAAGAGATTCACACAGCCATATATGCTCACTGTGCACATCAGGATTCATAAGAAAGAGAAGCCGTATCTGTGCAGCACATGTGGTATGTCTTTTGTTAGCTCTGGGGCCTTGCTGgtccacacacgcacgcacacaaggGAGCGGCCTCATCAATGTGACATCTGTGGAAAAGGTTTTGCCACCGCTACGCTATTGACAGAACATCAGCGattccacacaggagagaggcCGTATTCTTGCTCACAATGTGACAAATCGTTCCACATTAATGCAGGACTGAAAAGACACatgaggacacacacaggataTAAACCTTACCAGTGTTTAACATGTCACAAGACCTTTTCTCAAAAATACAACATGAGGATACACCTCAAGGTCCATAAGATCATCTAGCATGCTGTTGCGACATTTGGAGAATGTATATTTAGTGATAAAGAAAAGCCTGGTTCATTGCTACGCCAGGGCACGCTGTTTTGGTGCATTTCCATGACAGTAAAACACCAACATGTATGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638172.1 lncRNA upstream 28451 14115743 ~ 14116336 (+) True LOC120553487
TU308995 lncRNA upstream 90563 14016098 ~ 14054224 (+) False G227743
TU308988 lncRNA upstream 90563 14050419 ~ 14054224 (+) True G227743
TU308986 lncRNA upstream 97802 14032395 ~ 14046985 (+) True G227742
TU308980 lncRNA upstream 175100 13967543 ~ 13969687 (+) True G227736
TU309111 lncRNA downstream 68705 14219309 ~ 14219604 (+) True G227811
TU309146 lncRNA downstream 175533 14326137 ~ 14333923 (+) True G227843
TU309181 lncRNA downstream 224215 14374819 ~ 14375465 (+) True G227874
TU309182 lncRNA downstream 226260 14376864 ~ 14378694 (+) True G227875
TU309214 lncRNA downstream 276497 14427101 ~ 14427328 (+) True G227895
XM_039791909.1 mRNA upstream 124 14137191 ~ 14144663 (+) False LOC120553474
XM_039791912.1 mRNA upstream 124 14137191 ~ 14144663 (+) False LOC120553474
XM_039791908.1 mRNA upstream 124 14137193 ~ 14144663 (+) True LOC120553474
XM_039791913.1 mRNA upstream 124 14137587 ~ 14144663 (+) False LOC120553474
XM_039791948.1 mRNA upstream 139882 14002132 ~ 14004905 (+) False LOC120553485
XM_039791923.1 mRNA downstream 9473 14160077 ~ 14167596 (+) True LOC120553477
XM_039791924.1 mRNA downstream 9473 14160077 ~ 14167596 (+) False LOC120553477
XM_039791925.1 mRNA downstream 9473 14160077 ~ 14167596 (+) False LOC120553477
XM_039791926.1 mRNA downstream 9473 14160077 ~ 14167596 (+) False LOC120553477
XM_039791616.1 mRNA downstream 217316 14367920 ~ 14374654 (+) True ints13
TU309000 other upstream 139894 14002363 ~ 14004893 (+) False LOC120553485
TU309001 other upstream 139938 14002363 ~ 14004849 (+) False LOC120553485
unassigned_transcript_1494 other upstream 309786 13834929 ~ 13835001 (+) True trnak-cuu_14
unassigned_transcript_1493 other upstream 310456 13834221 ~ 13834331 (+) True trnal-caa_24
unassigned_transcript_1492 other upstream 311638 13833039 ~ 13833149 (+) True trnal-caa_23
XR_005638140.1 other downstream 1018000 15168604 ~ 15197830 (+) False LOC120553256
XR_005638118.1 other downstream 2620454 16771058 ~ 16831243 (+) False cald1a
XR_005638117.1 other downstream 2620458 16771062 ~ 16831243 (+) False cald1a
TU309802 other downstream 2769059 16919663 ~ 16922823 (+) True G228335
unassigned_transcript_1495 other downstream 3439487 17590091 ~ 17590163 (+) True trnak-cuu_15

Expression Profile