RNA id: XM_039791933.1



Basic Information


Item Value
RNA id XM_039791933.1
length 3343
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC120553479
representative True

Chromosome Information


Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 13660950 ~ 13667737 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


cccatgagATCCACTGAAAGGGAGgggacttcgcctctctatAAGCCCGATAGAGGGCGTACGTAGCCGCCTACCCGTAGAACTGGTGTCATCCTGCAGGGCTGCTATTtctcaaaaaaaagaagaaaaaaaagggctgCTATTTCTCAAGAAATGAAAGTAAACCCGAACGCCTAAAGTGAACCTCGCCCCTACACGTCAGTTTTCACAGACAACGGACTTCTCGGCAGACATCATCACTGACAGGTCCGCAATGCAAACTGGATGATGATGGGACACGGCATTTTGTTGTGCGCTGCATCGTTTTTTTTGCCTAGGCGATGAACAGTGTCAACCGATTCCCAGAGTTTATCTACCGCCACTGGAATAACCCTGACATGGCCTCAGCCAGCAGTCTCCTGTGTGAAGAACAACTCCTGTGTTCAATCTGTCTGGATGCATTTACTGAGCCTGTCTCTACTCCATGTGGACACAACTACTGCAAGGCTTGTATCACAGGGTACTGGGCCAGCAGTGGCCAGGTACAGTGTCCcctctgtaagaagaagttccGCAAAAGACCACAGCTTCAAGTCAACACAGGGTTCAGAGATATGGTGGAGCATTTCAACAACATGAGGGTGAGGGGGGACAATAACACCCTTGCCAAACCAGGAGAGGTGCCCTGTGACATCTGCCTTGAGCCGAGGCTCAAGGCCCAGAAGACGTGCCTGGTGTGTTTGGCGTCGTACTGCCAGCctcacctggagcctcatcAGAGAGTCAAAAGCCTTAAGAAGCATCAGCTGATCGACCCTGTGTCAAACCTGGAGGACAGGGTATGTAAGATGCACGACAAGATGTTCGAGCTCTTCTGTCGCCAAGACcagatgtgtgtttgtttcatgtGCTTAAAAGACAACCATGCAACGCATGAAGCCATTCCACTAGAGCGCGCGTTCAAAGAGAGGAAAGTTGAGCTGGGCTATGTGATGTCAGAGATAAAAATGATGGAAAACACTAAATCCAGGCATATTAAGGAAATCAAATCGTCAGTTGAACAGAGCAAGAAAGAGTTTGAGAAAGAGATAGCAGACATTGCTGAGGTTTTCACTGCTCTGGTGGTCTCTCTGCAAAGAAGCCAGGCTGATTTGATTAAAGTGATCCAGGAGAAGCAGAAAGCAGCACAGAAGGAGGCTGAAGACTGCATGACACAGCTGGAGCAAGAAGTCGCTGAGTCGAGGAGGAGAAGATCCGAAATGGAGCAACTTTTACAAACAGAGGACCACCTGCACCTCCTGCAGAGCTGCCCATCTCTCTTCTTCCCTGCACACACTGAGGACCTATTCAGCTCTCTGTCTTACTCCACCTCTCCACTGACATCACACCTCTACGACATCAGTCGGCAGAGTTATGTGGGGATGGTGAAAAAAGCGTTGGCTCATATGGAAAAGAACCTCAGTAATGAGATGGAGATGCTTATTCATGAGGTCAGGTTATCTGATGGTTGTGAGGCCGATGAACAGCCTGATGCAGCGGAGAAAGTGATGACAGATGAGTTTGTTAAAGAAGTGTGGACTCCGCCACAGGACAAGCTGATGATGATCCAGCAGTATGATGGGGTAGACGTGACGCTGCACGCCTACACAGCCCATTCCAAACTCGTGGTGTCTGACGATGGAAAACAAATGAGTTTTCGTCAAGGCCCATCGCCTCCGCCTCCGCTATTCGTAAGAAGATTTGTACGTCAACCCTTTGCCTTTGGGAAAGAGGGTTTTTCCTCAGGCAGGTTCTACTATGAAGTCCGGGTCAGTGGAAGTAAAGGTTGGGTATTGGGAGTGGTCAAAGAGTACATTAACATGGAGACGTTTTTCTTTCCCACCCTGGGGGAGGAGCGCTGGACATTTTGTGGAATCTACAACCAATTCAACGATGAATATTTTGCTAATAATGTTAGCAAAACTCCCCTGTACCTGAGGCAAAAGCCAGAGACAGTTGGTGTGTTTGTCGATTACGAGAAGGGAGAGGTCTCCTTCTATGACGTGGAAGCCAGGACTCTGATCTACTCCGACACAGGATGTGCCTTCATGGAGACCCCACCTGCACTAAAAGCTTTTCTCTATTCTATGGCTGGTGCATACTCAAGTAGCAGACCAAGGCTCTACCCTATTTTTGGCATCTTGGAAGATGAATATGATTATGACAACATGCTCGAAATCACTCCTGTATGCCGCACAACTTAAAGTGCCACATACAGTGGGGGAAATGAATGTGTAACTTGTACTGGAATGTTTTCTCATTTCAGATTTCTCATTTCTAATATCAGCTATGTATGTTTGTTAGTATTCGGGCACACACATTATTGGaatatatagtacagtatatttattGCAGCAGAGACCTATTTACACATCAGAGACCGTAGTAATCTTTAGTATTAGGTTCTCAGTGcctgtactctgcacaatgacaacaataaaattaaatctAATCTTATCTAATTTAATAGTAGTAGGAGTATCATACATTGCAGAAGGACAATACATCTTATGATACATATATATTCTATGATTTAATTCTTAGCTTTGTTTTTTAACTGATCAAAGCAGGTAAGATCACTCACCTGACAGTTGATGATGAGGTTCTTTTTAAGGTAGGGAGAAAAGTAGAAGGTAGATCAGTCATATACTCTATTAGTATAGGTTAAGAGCTTAatctttaataattttttttataatagattgttttttaaatgctaaaaCATTCACTGTTTCTAgcttttcaaatgtgaatatttgcttgATTTCTGTTTGTATCTATTTGTTGGACAAAAGATACATAAATATGTTAATTTGGAGGTTAAGAAATCATGATGGACATATTAGGTCTTCTGTCATTTTACAGACCGaacgattaatcaagaaaataatcatcagattaaatgataatgaaaatagtAACCTAGCCCTTAGAGGTTTAACTTTGGGCTCAAGGTTAGGCTTGCATCGCCTGTGGGAATCCACCAAATTTGCGGTTGACATTAGTGAACACCTACTTTCCTCACCTTGTGCTATCAATAATCTTGTTCATCAAATTACTTCTTTGAATTTAAGTATGCAATTCTGAGCATATCATATGTGTCCTTTTATGTTTTGATCACTGCATGTGAAACCCACTCACTACAGGGCCTATATtccactattttctttttttaaatgcaagcTTTCTTAAAGGCCAAGACATCTGGCATGCAAACCATATCTGATAAATGAGCTTCAAAACCAGGTGTTTTATAAGTGTGTACTATGCATATGATATGTATTAGGCCTATACAGCTTAATAAAAGTGCATTTCTTAAAATGTT

Function


GO: NA

KEGG:

id description
ko05168 Herpes simplex virus 1 infection

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU308840 lncRNA upstream 106124 13554250 ~ 13554826 (+) True G227662
TU308823 lncRNA upstream 129403 13516482 ~ 13531547 (+) True G227646
TU308813 lncRNA upstream 167089 13493401 ~ 13493861 (+) True G227639
TU308615 lncRNA upstream 585602 13071545 ~ 13075348 (+) True G227510
TU308594 lncRNA upstream 617932 12987713 ~ 13043018 (+) True G227499
TU308978 lncRNA downstream 288960 13956697 ~ 13965492 (+) True G227734
TU308980 lncRNA downstream 299806 13967543 ~ 13969687 (+) True G227736
TU308995 lncRNA downstream 348361 14016098 ~ 14054224 (+) False G227743
TU308986 lncRNA downstream 364658 14032395 ~ 14046985 (+) True G227742
TU308988 lncRNA downstream 382682 14050419 ~ 14054224 (+) True G227743
XM_039791944.1 mRNA upstream 1716 13630954 ~ 13659234 (+) False LOC120553484
XM_039791943.1 mRNA upstream 3188 13630951 ~ 13657762 (+) True LOC120553484
XM_039791945.1 mRNA upstream 4360 13630951 ~ 13656590 (+) False LOC120553484
XM_039791770.1 mRNA upstream 170531 13479727 ~ 13490419 (+) False napepld
XM_039791771.1 mRNA upstream 170531 13480265 ~ 13490419 (+) False napepld
XM_039791892.1 mRNA downstream 7067 13674804 ~ 13798380 (+) True LOC120553473
XM_039791895.1 mRNA downstream 7067 13674804 ~ 13798380 (+) False LOC120553473
XM_039791894.1 mRNA downstream 7067 13674804 ~ 13798380 (+) False LOC120553473
XM_039791896.1 mRNA downstream 7067 13674804 ~ 13798380 (+) False LOC120553473
XM_039791898.1 mRNA downstream 7067 13674804 ~ 13798380 (+) False LOC120553473
TU308693 other upstream 181923 13475145 ~ 13479027 (+) False yeats4
XR_005638103.1 other upstream 640690 13005339 ~ 13020260 (+) False nrf1
TU308397 other upstream 1534405 12120872 ~ 12126545 (+) False st8sia1
TU308276 other upstream 1903633 11689169 ~ 11757317 (+) True G227278
TU308207 other upstream 2548045 11102836 ~ 11112905 (+) False G227216
TU308903 other downstream 7087 13674824 ~ 13685881 (+) False LOC120553473
unassigned_transcript_1486 other downstream 101318 13769055 ~ 13769127 (+) True trnak-cuu_11
unassigned_transcript_1487 other downstream 102329 13770066 ~ 13770177 (+) True trnal-caa_20
unassigned_transcript_1488 other downstream 107250 13774987 ~ 13775059 (+) True trnak-cuu_12
unassigned_transcript_1489 other downstream 133911 13801648 ~ 13801760 (+) True trnal-caa_21

Expression Profile


XM_039791933.1 Expression in all Baseline Samples

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XM_039791933.1 Expression in each Bioproject

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XM_039791933.1 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 80.
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