RNA id: XM_039791935.1


Basic Information

Item Value
RNA id XM_039791935.1
length 2927
RNA type mRNA
GC content 0.48
exon number 6
gene id wnt5b
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 13802193 ~ 13895001 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGTCTCAACAGCAGAGCACTTTCCCCACCACCGGCTGTGTGGCGTTGACGCGGCGGACCATGGACAACAGGCCTGTCCGGAGAAAGCGTAACGATGCCGTGCGACATCTGCTGCTGGCAGCCGCCTTCCTTGCCTGCAGCTCCCAACTGCTGGTGGTGGATGCCAACTCATGGTGGTCACTAGCTTTGACCCCGATCCAGCGGCCAGAGATGTATATCATTGGCGCTCAGCCTCTCTGCAGTCAGCTGTCTGGTCTCTCCCAGGGCCAGAGGAAGCTGTGCCAGCTGTACCAGGACCACATGATCTACATCGGAGACGGAGCCAAGACGGGCATCAAGGAGTGCCAGTACCAGTTCAGACAGAGGAGGTGGAACTGCAGCACTGTGGACAACACATCAGTGTTTGGGCGGGTCATGCAGATTGGTTCCAGGGAAACAGCCTTCACTTACGCCATCAGCGCGGCCGGTGTGGTCAACGCCATCAGCCGAGCATGCCGCGAGGGCGAGCTCTCCACCTGCGGCTGCAGTCGTGCCGCTCGACCCCGTGATCTGCCCCGCGATTGGCTGTGGGGCGGCTGCGGCGACAACGTGCATTATGGCTACCGATTTGCCAGGGAGTTCGTGGacgccagagagagagagaagaactACCCACGTGGTTCTGCTGAGCACGCCAGAACACTGATGAACCTGCAGAATAATGAAGCAGGGAGACAGGCGGCCTATAACCTTGCAAATGTGGCCTGTAAGTGTCACGGCGTCTCAGGTTCCTGCAGTCTGAAGACCTGTTGGCTCCAGCTGGCCGACTTCAGAAGTGTTGGCGAGTTCCTGAAGGAGAAGTACGACAGTGCAGCTGCCATGCGCATTGGACGCAAGGGCAAGCTGGAGCTGGTAGACAAACGCTTCAACACCCCGACCCCGGATGATCTGGTCTACATCGACACCAGCCCTGACTACTGCCTCCGCAACGAGACCACAGGCTCGCTGGGCACGCTGGGCCGCCTCTGCAACAAAACCTCGGAGGGCATGGACGGCTGCGAGCTCATGTGCTGCGGCAGAGGATACGACCAGTTCAAGACCTACAAGCACGAGCGCTGCCACTGCAAGTTCCACTGGTGCTGCTACGTCAAGTGCAAGCGTTGCACAACGCTCGTGGAtcagtttgtgtgtaaatagtaCCCTGACACATGATGGACGATTGGAAGGGGATGAAAAGGGAGGAAAGGGACTTAAGGGAGAGTAGATGAAGAGGTGACGGGATGATGGATGGGTGAAGGGTAGATGCATTTTCAGGGTTTTGTTCAGGAAAAGTTAAGACACAGAAGTTCCATTTTCTGACCagtttccttctctcctccattTATAAATCTCCTGCCTTTTTTACACAAAGAGCAAAAGCTGCATAACACTTGCGTGGccattttatttgtgtgtgtgaacagcACAATGATGGGGAATTGGGAAGAAGAACAGATGGATGGGAAGGTGGACACAAGTAGGAAGCGAGGATTTCTTccacactttatttttcaacGGAGAGTCCTGTTTCTCCCCCCTCCACCATCACTTTCTGCCTTCCTGTATAATATCCTGATCACAACCCTGAAGGAAGGAGTgatggaaaggaaaggaaggacaAAACAAAATGGATGAACACAGAAGGACAGCAAGGATAAGCGGACCCTAGAAGTGGACACATGGTGTGATAACAAAGATATGAGAgatcaaataaatatataattaaataataaataaacctACAACTCTGATTGTTATTTAAAGAGACTCGAACAAACCTCAGGCACACTTTGGACCTATAAAACGTGTGTTCACGTATTCTGGAATCCCACAAATCAGTACAGTCCTTTTGGACTTTGAAGCCATGTAATCGCTGACCTGTGTCACCGTCTCTCTTTCAAAGAACTTTTGACCTTTAACCCTGCCAAGAGAACTTTGTGCATGTGAGTTGTGCTGACGTTGCTCAAACACACTTGCAATACCGACAGAGAACACCAGAAATGCAGCAGGCGGAAGAGGAATCACTTATTGGAGGTGCAAAACAGAAAGGGGGTGAATGGAGGGGAATAGAGAAAAGTGGGAAAAGTTGAAATAAAATGACTTTGGGTGATTATTTTGCAGGTGACCGTTTCACAAGCCACTCAGCTGAATTTCCAGCTGTCGATTTCtgtttaaaaatgcaataaaaacaatCTTCAAGTCAAAAAGGACTAACGACTTAAAGGACACACTCTATCCATTTATCTCTGTGTAACAACGGCTGTTAGAGCAGATTTCCAGCACCTGTCCTGACAAGTGTGTCTGCGCAGGTTAATGAAGCTCGCCGGTTGCGGCCATCTCCGCGTGGCTCTTTAAACAAGCAGCTCACACGGGCAGCGTCCTTCATCTGACAGTGAAGTGAGCGAGACCTCCATTAGTGAGATTAATGTGCTGTATCTGCCTTAATGAACCCGCACTAAGAGACACGTTCACTGTGAGTGGACCTCTTCATCACATGTTGTTATGTAACTTAAGTCAACAAAAAGCCCTGTGCTGTGGATTTTTGGCAGTTTTGCCACCAATTTACCATTTTATAATACTGTTATACCATGAATTTTGCAACTTGTATGGGTTGGGTTGAGACTATTTTAAGTGTATAATGTAATCCAATCAATAGacgcagttgataacaacatgAAGAGGACAAAGTGAGCAGAAGAGGACTGAACATGCTGTGGAAAAATGAATGTGTGAGCGTTAAAAAACAGAGAGGACTGCAATTTATTACgtgctactttaaaaaaaaaaaaaagaagtagatCAGAAAAGAAggtatattttattattgtttttcatttcatttgttttttctgtgttttatacATGAGTATTATTGTGTACTCTTTTGATAAACTAGTCTTCGACAATGA

Function

GO:

id name namespace
GO:0009826 unidimensional cell growth biological_process
GO:0002574 thrombocyte differentiation biological_process
GO:0031018 endocrine pancreas development biological_process
GO:0051209 release of sequestered calcium ion into cytosol biological_process
GO:0002062 chondrocyte differentiation biological_process
GO:0001525 angiogenesis biological_process
GO:0010172 embryonic body morphogenesis biological_process
GO:0048840 otolith development biological_process
GO:0048884 neuromast development biological_process
GO:0031101 fin regeneration biological_process
GO:0008591 regulation of Wnt signaling pathway, calcium modulating pathway biological_process
GO:0061053 somite development biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0060030 dorsal convergence biological_process
GO:0005102 signaling receptor binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308840 lncRNA upstream 326725 13554250 ~ 13554826 (+) True G227662
TU308823 lncRNA upstream 350004 13516482 ~ 13531547 (+) True G227646
TU308813 lncRNA upstream 387690 13493401 ~ 13493861 (+) True G227639
TU308615 lncRNA upstream 806203 13071545 ~ 13075348 (+) True G227510
TU308594 lncRNA upstream 838533 12987713 ~ 13043018 (+) True G227499
TU308978 lncRNA downstream 61696 13956697 ~ 13965492 (+) True G227734
TU308980 lncRNA downstream 72542 13967543 ~ 13969687 (+) True G227736
TU308995 lncRNA downstream 121097 14016098 ~ 14054224 (+) False G227743
TU308986 lncRNA downstream 137394 14032395 ~ 14046985 (+) True G227742
TU308988 lncRNA downstream 155418 14050419 ~ 14054224 (+) True G227743
XM_039791904.1 mRNA upstream 83171 13674804 ~ 13798380 (+) False LOC120553473
XM_039791942.1 mRNA downstream 7857 13902858 ~ 13939279 (+) True adipor2
XM_039791946.1 mRNA downstream 107131 14002132 ~ 14004905 (+) True LOC120553485
XM_039791948.1 mRNA downstream 107131 14002132 ~ 14004905 (+) False LOC120553485
XM_039791909.1 mRNA downstream 242190 14137191 ~ 14144663 (+) False LOC120553474
XM_039791912.1 mRNA downstream 242190 14137191 ~ 14144663 (+) False LOC120553474
unassigned_transcript_1494 other upstream 46550 13834929 ~ 13835001 (+) True trnak-cuu_14
unassigned_transcript_1493 other upstream 47220 13834221 ~ 13834331 (+) True trnal-caa_24
unassigned_transcript_1492 other upstream 48402 13833039 ~ 13833149 (+) True trnal-caa_23
unassigned_transcript_1490 other upstream 79348 13802093 ~ 13802203 (+) True trnal-caa_22
unassigned_transcript_1489 other upstream 79791 13801648 ~ 13801760 (+) True trnal-caa_21
TU309000 other downstream 107362 14002363 ~ 14004893 (+) False LOC120553485
TU309001 other downstream 107362 14002363 ~ 14004849 (+) False LOC120553485
XR_005638140.1 other downstream 1273603 15168604 ~ 15197830 (+) False LOC120553256
XR_005638118.1 other downstream 2876057 16771058 ~ 16831243 (+) False cald1a
XR_005638117.1 other downstream 2876061 16771062 ~ 16831243 (+) False cald1a

Expression Profile