RNA id: XM_039791969.1


Basic Information

Item Value
RNA id XM_039791969.1
length 1513
RNA type mRNA
GC content 0.48
exon number 10
gene id LOC120553489
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 17276013 ~ 17297654 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTGAGGAAAGATGGCGGAAGGAGGTGCGGCGGATCTGGATACCCAGAGAGGAGAGGTCGCGGCACTGTTGAAAACACAGCTAAAAAAGGGAGACACATGGTACCTGGTGGACAGTCACTGGTTCAAACAGTGGAAGAAATATGTGGGATATGACAGTTGGGACAAATACCAGATGGGTGACCAGAATGTCTACCCCGGACCCGTTGATAACTCTGGTCTTCTCAGAGATGGGGATGTGCTGGCCATCAAAGAGCACCTCATCGATGAGCTTGACTACATCCTGGTCCCCACAGATGGCTGGAATAAGCTAGTCAGCTGGTATGGATTGACAGAGAATCAGGAGCCAATTGCACGCAAGGTGGTGGAACAGGGTATGTTTGTGAAGCACTGCAAGGTGGAGGTGTACCTGACGGAGCTGAAGCTCTGTGAAGACAGCAACATGGACAATGTGATCACCAGACGCTTCAGTAAAGCTGACACAATAGACATGATTGAGAAGGAGATGAGGAAGCTGTTCAGCATCCCTGATGAGAAGGAGACCAGGCTGTGGAACAGGTACATGAGCAACACCTTTGAGCCTCTCAACAAACCTGACAGCACCATTCAAGATGCCGGCCTCTACCAAGGACAGGTTCTCGTAATAGAGCAGAAGAGTGAGGATGGCTCATGGCCCCGAGGCTCCACGGCACCCAAGTCATCTGGTGCTTCCAATCTCTCTGCTTTGCCAAAGATCTCGCCTTCATCTCTCACAAACAATCATAACAGCAGCTTCAACAGCAGGAACGTGAAGAATTCAAGCTATGGTCTACCATCCTACCACCCCTACAGCAACAGCTATGACTACTCAGACCAGAGCAGGCAAAGCGAGCGCTCCGGCCTCTGTGGACTCTCCAACCTGGGCAACACGTGCTTCATGAACTCTGCTGTGCAGTGTTTAAGCAATATCCCTCCACTGACGGAGTACTTCCTCAAAGACAAGTTCACAGAGGAGCTGAATGAGGACAACCCGCTGGGCATGAAGGGGGAGATCGCCAGAGTCTACGCCGAGCTTATCAAGCAGCTGTGGTCGGGCAAATTCAGCTACGTCACCCCAAGGCCTTTCAAGTAAGGCAGTTGGAGCAGGAAGCAAATGTATGTCTTTGGAGTATAAACCCTACTATCATAACTGCTCTGAAAGATACAAACGCACAAGTAGGCAAGGAGCAGACCACTGAATGGCCTAACACACCAGTGTAAAAGCCTGGTGAGTGAAggattttaaagtgcagttagCACCAGTTTTGAATcctcaaaataatacatttaacaaTTTGAAAATGGCCATGTTGATATCGGTAGTTTGGGTGCAGGCTTGCATACAACTGTGGGGGCTAAATCAATGGTGATGAAGTGTTAAACACTAAAACCGATGGCCAAGAAAGAACGAGTATGTTAAATTTGTCTAAGAACGGACGGACTTTCATTTTATCGATTTCTAATATTGGGCAGAAAGTATCCTAGTTCTTCTGTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309875 lncRNA upstream 70373 17187926 ~ 17205640 (+) True G228392
TU309867 lncRNA upstream 137662 17137271 ~ 17138351 (+) True G228384
XR_005638158.1 lncRNA upstream 155429 17119099 ~ 17120584 (+) True LOC120553376
TU309855 lncRNA upstream 160670 17113825 ~ 17115343 (+) True G228375
TU309854 lncRNA upstream 164663 17109768 ~ 17111350 (+) False G228374
XR_005638182.1 lncRNA downstream 12809 17299723 ~ 17301020 (+) True LOC120553531
XR_005638205.1 lncRNA downstream 315278 17602192 ~ 17790439 (+) False LOC120553790
XR_005638203.1 lncRNA downstream 315279 17602193 ~ 17790439 (+) False LOC120553790
XR_005638204.1 lncRNA downstream 315280 17602194 ~ 17800247 (+) False LOC120553790
XR_005638202.1 lncRNA downstream 315280 17602194 ~ 17790439 (+) False LOC120553790
XM_039791155.1 mRNA upstream 556 17262646 ~ 17275457 (+) True LOC120553077
XM_039791148.1 mRNA upstream 15145 17237935 ~ 17260868 (+) True kdm5a
XM_039791149.1 mRNA upstream 15145 17237935 ~ 17260868 (+) False kdm5a
XM_039791150.1 mRNA upstream 15145 17237935 ~ 17260868 (+) False kdm5a
XM_039791156.1 mRNA upstream 38576 17234012 ~ 17237437 (+) True LOC120553078
XM_039791852.1 mRNA downstream 44606 17331520 ~ 17348959 (+) False il17rel
XM_039791851.1 mRNA downstream 48485 17335399 ~ 17348959 (+) True il17rel
XM_039792270.1 mRNA downstream 227625 17514539 ~ 17519517 (+) True pim3
XM_039791143.1 mRNA downstream 283988 17570902 ~ 17576427 (+) True alg12
XM_039791135.1 mRNA downstream 297663 17584577 ~ 17598312 (+) False brd1a
TU309802 other upstream 353190 16919663 ~ 16922823 (+) True G228335
XR_005638118.1 other upstream 444770 16771058 ~ 16831243 (+) False cald1a
XR_005638117.1 other upstream 444770 16771062 ~ 16831243 (+) False cald1a
XR_005638140.1 other upstream 2078183 15168604 ~ 15197830 (+) False LOC120553256
TU309001 other upstream 3271164 14002363 ~ 14004849 (+) False LOC120553485
unassigned_transcript_1495 other downstream 303177 17590091 ~ 17590163 (+) True trnak-cuu_15
TU310117 other downstream 1243251 18530165 ~ 18531168 (+) False srr
TU310402 other downstream 2123576 19410490 ~ 19413704 (+) True G228784
unassigned_transcript_1503 other downstream 2172169 19459083 ~ 19459154 (+) True trnaq-uug_5
XR_005638131.1 other downstream 2345033 19631947 ~ 19808412 (+) False LOC120553210

Expression Profile