RNA id: XM_039791971.1


Basic Information

Item Value
RNA id XM_039791971.1
length 4855
RNA type mRNA
GC content 0.51
exon number 30
gene id LOC120553490
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 21684210 ~ 21753271 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gaaaaacacaacagcGCTTGAATTCAAGTGCAGTGGGTGGAGTTTAAGGATGCTTTAGGGGTGCATACAGGAGAAGTTGTTGCCTTCACACGCCGAAGCCATGCGTAATGCGTGTGACTGAATGACCGCCGGCCGGTGAGGACGGAGGATGCTGGAGCATGAGGCAGGAGCAGACATGCGACTGGTCCGTCAGATCAGCGCCGGGATGAAGATCCAGGCCGGGGGAGAGCACACAGGCTGCAGCAAGGTCGCGGACAATCCGGAAAACCAGGTCATCTGTTTGCAGTGTCAAGAGGAGCTGGTGCGGGTTTGTCCGGGGAGTCCGCGCAGTCCTCGCCGCGCCATCGCGCCGCGCTTCTCCACCGGATCCGCAGACCGTGAGCCCAGCAGTAGCAGCTACAATGCCTCTTCAGGAACCTTCTACAGCTGTGTCAGTCAGATCACCATTGGGTTTGATCTCGGGGGTCAAGTGGCCATCGGCTTCTCCCACTGGAAGAGTCCTTTCCCAGCGAGCGGCCAGAATCTCCCCAGTCCGGACTGCGTTCACTCTGAGGCCTCCACCGTCCCGCCCATCAGCGAGTATCTGGAGCCGGTGTCCTGCCCGGCATCGCTGTCCATCACCCCGCTGCCCACCTGCAGCGCCAGCCAGGAGACGCTCTGCGACAGCAGCACGAGAGTGAGTTTGTCTCTACATGGGTCTGAGCCCCAGCGGCGGAGCCCCCACCGACGCAGAGTCCCGCCGCAGCCCTCGGCCTCAGGCTACCAGGCAGCGGACAGACCTCTCGCCTTCCCCTCCACTGGGAAGGCAGACATCATGGAGGAATCCTCGTCTCAAGCCGCGGACTCCAGCACTCAAGACGACGTGCCTCCCCTCGCTGTGAAGGATGTCAATGTGCTGCTTGAGAGAGAAATGTCTGAGGGCATCAGCAGCCCATCCAGAGACAACGACTCCACCCTGCTGAACCTGGGAAACAACAGCAGCATCCTCGACGACAACACAAAATCTGATTCTGGCCTCCCAGAGgGGAGGGGTAAGTCCAGCGGCCTGTGCTTCAGCGATGGAAAGAGTCGCATTGACTACATTCTGGTTTACAGAAAGTCCAGCTCGCAGTCCGAGAAGAGGGAGATATTTGAGCGGAACATGCGTGCAGAGGGCTTACAGATGGAAAAGGAGGCCTCCATAACAAACAGCGACGTGCTTTTTCTGAAGATCCACGCGCCGTGGGATGTTCTCTGTCGCTACGCTGAGCTCATGAACATTCGCATGCCTTTTAGGAGGAAAATCTTTTACATGCACCGACGGCACAAGTTCATGAGCAGGATGGAAAAGCGCATCAACAAGTTTCGTGGCTGGCTTCCCCGCAAGCCCATGAAGTTTGACAGCGAAACTCTGCCTGACCTGGAGGAGAATGAGAGCTTCACCGCCCCCTTCAGTCGATCAAGGATACaccaTTTCATCATCCACAACAAAGACTCTTTTTTCAACAACGCCACCAGAAGTCGCATCGTCCACCACATCCTTCAGCGGGTCAAATACGAGGAGGGGAAAAATAAGATGGGGCTCAATCGTCTTTTGAGCAATAGTTCATATGAGGCAGCCTTCCCTCTTCATGAGGGGAGCTACCACAGCAAAAACTCCATCAGAACACATGGAGCAGAGAACCATCGGCACCTGCTGTACGAATGTTGGGCCTGGTGGGGGGTTTGGTACAAGTACCAACCGCTGGACCTCATCAGgaGGTATTTTGGGGAGAAGATCGGTCTATACTTTGCCTGGCTCGGCTGGTACACGGGGATGCTGTTTCCTGCAGCTCTGGTCGGCCTCTTGGTATTCCTGTATGGCCTCTTCACTCTGGAGCACTGCCAGGTCAGTAAAGAAATCTGCCAGGCCACTGACGTCATCATGTGCCCCATCTGTGACCAGTACTGCCCCTACCTGAGACTGTCAGACAGCTGCATCTACGCCAAGGTCACCCATCTCTTTGACAATGGCGCAACTGTTTTCTTTGCTGTATTCATGGCTGTTTGGGCAACGGTCTTCCTGGAGTTCTGGAAAAGACGCAGAGCTGTCCTCGCATACGACTGGGACCTCATCGactgggaggaagaggagctgtcgtttcagtgCGATTCGTCGCAAATGGCAAAGCGCACCTCCATCTCCCCGTCATCGCCAGTCTTCGCCGATTCATCAGATTCATCATCAGATTCATCTGCTTCATCAGCTCCATCAGCTTCTTCAGCCTATGAGCCTCATCAGAATCATCAGCCACCActaccaccaccagtgtctggactccatggGGGGATTTATCGTGCTGCTGCTCAGGGCAGACGCCCCTCACTTTCAAATTTCCCTGACGAAATACGCCCCCAGTTTGAGGCCAAATACTCGAAGAAGGAGAGGATGAACCCTATATCTGGAAAGCCTGAACCGTACCAAGATTTCACTGACAAATACAGTCGCCTCATCGTCTCAGCATCCGGGATCTTCTTCATGATATTGGTGGTGATCGCCGCTGTGTTCGGCATCGTCATTTACCGCGTGATCACAGTCAGCACCTTCGCCGCCTTCGGCTGGGCTCTGATCAGGAACAACTCTCAGGTGGCGACCACGGGAACGGCAGTCTGCATCAACTTCTGCATGATCATGCTCCTCAACGTGCTCTATGAAAAGGTTGCTCTTCTTCTCACTAATTTAGAACAGCCGAGGACAGAGTCAGAGTGGGAGAACAGCTTCACCCTCAAGATGTTCCTTTTTCAGTTTGTCAACCTCAACAGTTCAACTTTCTACATCGCCTTCTTCTTGGGAAGATTTACAGGCCGGCCTGGTGCATATCTACGCCTCATCAATCGCTGGAAACTGGAAGAAtgCCACCCCAGTGGCTGTCTCATTGACCTCTGTCTACAGATGGGGATCATCATGGTGCTAAAACAGACCTGGAACAATTTTATGGAGCTCGGCTATCCGCTGATCCAGAACTGGTGGACCCGGCGGAGGCTGAGGAGAGAGCACGGAGAGAAAGCCAAGGCCAGCTTCCCACAGTGGGAGAGGGATTACAACCTACAGCCAATGAATGCCTACGGACTCTTTGATGAATACTTAGAAATGAttCTACAGTTTGGCTTCACCACCATCTTTGTGGCAGCATTCCCTCTGGCCCCTCTCTTAGCGCTGCTCAACAACGTCATCGAGATTCGTTTGGACGCCTACAAGTTTGTCACACAGTGGCGGCGACCTCTGCCCTCACAAGCCAAAGACATAGGGATCTGGTATGGCATTCTGGAGGGCATCGGCATTTTGTCCGTCATCACCAACGCCTTTGTCATCGCCGTTACCTCAGACTTCATTCCTCGCCTTGTTTACGCCTACAAGTATGGACCTTGTGCTGGTCAGGGTCGAGCAGGGGAGGGGTGTATGATTGGTTACGTCAACGCCAGTCTTTCAGTATTCCGGGTGTCTGACTTTGAGAGGAGATCACAGTACAGGACTAATGGCTCCGAGCTTTTTGGACAAGCTGTCAAGTTTTGCagGTATCGTGACTACAGGGAGCCTCCAGACTCTGCCGAGCCCTACGCATACACTCTACAGTTCTGGCACGTCCTGGCGGCCCGGCTTGCATTCATCATTGTGTTCGAGCACATGGTCTTTACTATCAAAACCCTGATCGCGTACCTGATCCCCGACCTCCCCAAGGACCTGCGGGATAGAATGCGGCGAGAGAAATACCTGATCCAGGAGATGATGTATGAGGCCGAGTTGGAGAGACTGCAGAAGGAGAAAAACGAGAAGAAGAACAAAGACAGGGTCCAAAACAAGGAATGGCCCTGAATACACCAACTGGTTATCAGCTGGTGTTTGGTTTTCACTGCACagtggaggaaggagaggagcgCTGGGTTTCCTGCATGATACTGGACCCTCATACCTTCCTCCTGCCATGTCAGACCAGCACCTCCTAGTGGACAGTAGATGAACTGCACCCAGCAGGGCCACACAGTGTACACAGGGCCCATTGTGTCTGCATTCATAACGGATGTCCTCTTGAACATTTGACAGTGGGTTTtgctacgttttttttttcttctttttctctctccagatAGTTTCTACCACTTTGGACTCTCAACAGCGTATGTCTTCAGATCCTGAATGTAGATTTCAAGCAAGACTAAAAGTTTTACGGACTTCTGGTTTTAGACGAGAGAAATAACTCTAACCGAGCTTACTGAATGACAAACCCTGTTTACATTTCTCCTCGTTTGAGGAGTTCACATATTGCTTTATTGCaaataaagatatttaaatGAATGTCAGGCCATCTGCTCTGCTATAGTgtagtgcaataaaaaaagcTAGAGAATGCAATTTCTGGAGAGATTGCGGTGGGATTGCTGGCTGCTGAAAACCTGACTGATGGACAGTCAGAAGCTAAACTGCATTGCTTGAAAAGCTGGGCTGCGTTGCTTCATGTATAGCAGGTAGCTGAACAGCatcgcttaaaaaaaaaaaatggctggaTCGCTGGCTTAACTTTGTATAAAAGGAGCAGCTGAAGGAGTATGAAGAGTTGGAATAATAGAAAAGGGCAAAATATAAAAGTAAGCAATGAAATGTATTGAAATGAGAGTTATATGTGTGAAGATTTATATGAGCTTAAATGTATGGTATGCAGGattttccttaaaaaaacaatttacagactaatacaaaaataatcccTAATTGGAGAGCAGGGCTACACGGAATCTGTGCACGCAGAATTCTTCAGatgtacaaatatttaaacagtggCGAGGCGATTAAGTCTGAATTCGTTTGAGGTAAAtagctcaataaaatgtttttatatta

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311216 lncRNA downstream 1671 21681560 ~ 21682539 (-) True G229413
TU311214 lncRNA downstream 1744 21681613 ~ 21682466 (-) False G229413
TU311187 lncRNA downstream 28048 21655902 ~ 21656162 (-) True G229392
TU311185 lncRNA downstream 41442 21642515 ~ 21642768 (-) True G229390
TU311122 lncRNA downstream 222750 21461076 ~ 21461460 (-) False slc38a2
XR_005638095.1 lncRNA upstream 23762 21777033 ~ 21777676 (-) True LOC120553093
TU311375 lncRNA upstream 101112 21854383 ~ 21856289 (-) True G229527
TU311391 lncRNA upstream 125001 21878272 ~ 21878705 (-) True G229539
TU311393 lncRNA upstream 126633 21879904 ~ 21880220 (-) True G229541
TU311400 lncRNA upstream 159134 21912405 ~ 21947444 (-) False G229546
XM_039792250.1 mRNA downstream 113097 21518625 ~ 21571113 (-) False slc38a4
XM_039792248.1 mRNA downstream 134143 21518625 ~ 21550067 (-) True slc38a4
XM_039792251.1 mRNA downstream 209608 21461137 ~ 21474602 (-) True slc38a2
XM_039792072.1 mRNA downstream 319102 21335537 ~ 21365108 (-) False gas2l3
XM_039792073.1 mRNA downstream 330737 21335537 ~ 21353473 (-) True gas2l3
XM_039791171.1 mRNA upstream 51147 21804418 ~ 21811081 (-) True LOC120553090
XM_039791173.1 mRNA upstream 51147 21804418 ~ 21811075 (-) False LOC120553090
XM_039791162.1 mRNA upstream 62911 21816182 ~ 21827934 (-) False LOC120553085
XM_039791161.1 mRNA upstream 62911 21816182 ~ 21827934 (-) True LOC120553085
XM_039791163.1 mRNA upstream 75740 21829011 ~ 21836594 (-) True selenoo2
XR_005638087.1 other downstream 538677 21063691 ~ 21145533 (-) False ptprz1b
TU310933 other downstream 725990 20957657 ~ 20958220 (-) True G229199
TU310704 other downstream 1561871 20067036 ~ 20122339 (-) False rerg
TU310602 other downstream 1844908 19811245 ~ 19839302 (-) False etv6
TU311312 other upstream 17817 21771088 ~ 21811031 (-) False LOC120553090
TU311319 other upstream 17865 21771136 ~ 21811097 (-) False LOC120553090
TU311637 other upstream 1351489 23104760 ~ 23239573 (-) True G229716
TU311825 other upstream 1938750 23692021 ~ 23711795 (-) True LOC120553170
TU311851 other upstream 1946426 23699697 ~ 23700198 (-) True G229907

Expression Profile