RNA id: XM_039791981.1



Basic Information


Item Value
RNA id XM_039791981.1
length 4925
RNA type mRNA
GC content 0.45
exon number 22
gene id si:dkey-159a18.1
representative True

Chromosome Information


Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 10916702 ~ 10932643 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CATACGAACGCATCACACATTTACCTCTCACAAAGAGTCACACTGATTtccacattttccttttttgcaCTGGTGTGCAAATGGACACAAGATGCTTTCCCATCAAATACACTTGACATGTAAATCCTCCACCAGCAGGTGTTTCTGCCCGCATCCCCGCATCCAGGTGACAGAAACACCTGCTGGTGGAGGACGCACCACTTCACACAGCACTTTTTAGGTTAAGGACCCGGCCGTCCAAGCACGTCCCACCCCCACTTGCTTTTGAAGCGCAACACTAATAACCAAGTCAGTATTGCCAGGCACCTCGGTCTCTGGTACTCTTATTTTTAGTGAGATCCCCTTACTTTAGCATCGGATATGATCTGGAGACTTGTGGTCCTCGGTGGGGTGTGCGTCCTTCTTCTGGGTGCTGAAGGCAGCAGCCGCGGGGGGAGGACGGTGACTTTCCACCGGCCTCAGCAGGATGAGAGCCAGGGCCAAGCGCGCGCACGACCCAGGAGGGATATGAGCAGCTCCTCCGGCACCCCAAGGCCTTTTCACGGTCCTCCCTTCACCTCCTGCCGGACCCCCCTCACCCCCGTCGAGCACAAGGTTCTGGATGACAATACGTATGAGACAGGGTTTAACGGTGATGATGGCTCCCATGTAATTCTCACATGGGTGGGCGATGGTACAGGGGTTGTCCTGGTGCTGTCAACATTTAGTGCTCCAATAGATACTTTCCTAGAAGGCGGCTCCTCAAGACTTTATCGAAGCACGGATTATGCAAAATCCTTCCATGACATTTCCCATCGGATCAACAACACCTTCATAAGGGAGGAGTTTGGAGTCAGTGTTGGACCAGGGAGTTCTGTGATACTGACAGCAGACGTACCGGTGGTGAACAACCCAGGCGGGGTCATCTTCACCTCCACGGATGCCGGTGCAACCTTTAAGTACATCCAACTGCCCTTCCACCTGGCCCAGCCAATCACGTACCACTTCCTCAACCCTGACTACCTTGTGGCCCTCAGCATTGATGGCAGTCTGTGGCTCTCCCTGGACTTTGGCGCTAAGTGGACAAAAGTTCACGATGGAGTGCATTCTTTCTCATGGGGGGCCGgcattaatttgttttttagctACAGTCGAACAGACACAGTTTATGCAGATGAGAGGGGGGATTTAGTGCTGAAGAGGACAAAGGATCTGGGGCAGACCTTCACAACAATCCACGAGGACATCTACAGTTTTGGCTACATCGgtgcctttctcttcttctctgtgaTGGAAGATTCGAGATCCCCTCGTGTCATGTATTTTTCATCGGACCAAGGAGAGACCTTCAGCCGGCTGCTCCCCTCCGCCTCCACCGAGCAGtTCTACTCCATCCTGGATGGAGATGAAGATATGCTTTTCATGCATGTGGACAACCCAGGAGACACCTTCTTTGGAACCATGTACACATCAGATGACCGCGGCATCCTGTTCTCCAAATCACTGGAGCGCCACCTGTTTGACGGGCAGAGGAAGAGCGATTTCACCAACATAACATCACTGAGAGGAGTCTACCTCACTAATAAACTAGACAAGGATGGCCGTATAAGATCCGTCATTTCCTTTAATAGAGGTGGGGCGTGGAGGCAACTTAACAAACCTGACAATGTGGAATGTGGCGAGCAAGTGAAGAATTGCAACCTTCATATTCATGGAGAACACAGTCGCAAAAACAGCATCATTCCCATGCTGGCTCTGTCTGAGCCAACTGCAATTGGTCTGGTTATCGCTCATGGTACTGTGGGTGACTCTCTGTCATCGTCGCAGCACCCAGATGTGTTTGTCTCCTCGGACGGAGGTTATAACTGGAGGGGGACACTGAGGGGTCCTCACCACTACAGCATATTGGACTCTGGGGGTCTCATTGTGGCTGTGGAGGCCCAGCATGAAGGACAAGTCAAGACTATCAAGTTCTCTACAGATGAAGGCCAGTGCTGGAAGTCCTACAACTTCACCCTGCAGCCTTTCTTCTTTGCAGGCCTGGCATCCGAACCGGGGACCAAGGCCATGAACGTTAGCGTGTGGGGCTTCCGGCCTGAGGAGGACGGCCAGCCCATGTGGGTGGCCGTCACCATTGATTTCCAGAGCCTCATTACAAGAGAGTGTAATGACCAGGACTATGAAGAGTGGTTGGCCCATGCTACAGTTGGAGGGGACTTGGAGAGAGAGGGCTGTCTCTTGGGTGTCAGAGAGACATACAGGAGGCTAAAGAAACAATCTTTGTGCAGAAACGGGCGAGGCTTTGTGGTGAGCAAGAAGCAAAGCCCCTGCCTGTGCACCAGAGAAGATTACTTATGCGACTACGGTTACTATCGCCATGTGAACACCTCCGAGTGTGTGAGACAACCCAGCGCTGCAAATAAAACCTTGGAGCTCTGTCTGAATGGAGAGGAGGATGAGCTGCTGACAGCCGGGTACCGTAAGATCCCGAGCGATCGGTGTGAGGGGGGATTCAGCCCTCAGCTCGCAGTGCAGACAGTCATCAACCCCTGTGGTGTTAAAACCAGCCCTGGCCCACCTGCCAGATCCTCGTCTCCAGTCACACACTTTGACACACCGCGAGAGAGGCTGGTGTTGATCCTGGTGTGTGCAGGAGCAGGAGTCATTGTCCTGATAGCGATTGTTTCAGCCGTCTTTGCTGTCAAGAGGGTGGTATACAGAAACAGGGCACCCGTGTATCGTTTCTCAAACCTCCAGATTCTGGATGAAACTAATGGCATCCCAGCTGATCTTGAAAGCGCCACCAGCAGCAATGGCACGGCCTGCCTGCAGGACTCAGATGATGATCTTATTAAGTGACACATGACTCATTTCTGTGGCTATAATGAGTATTCAAGATTGAGACCAGTTGTGCTGAAAAAGACTGCCAAAGGCATTTTGATGAACTTATTCTTGATATTTTGATGGGAGCACCCTTTGTGGCAAGTTTTGAGTATCTGAAAAGCTTGAGAAAATCTTAATTTATTGAGCGTGCTTAATTTCATTGCTTCACTTTGCTCGATTGCTCTTTGAtttgtatagttttttttttactctgtgtTGCATCACCTTTGTACTTGATCATCTGATCAATCAATTCATTAAAAAGAGTGCTGACAGGGCCATTGCTAGAGGGGACTGTGAGGTGCCATATAGACGCACCACATTTGGACAAACTTTGCTGTCAGTAAAGGGAAATAAATATTGGAATATCCCATCACGTGCAATAAGGGAGTGCCCTACATATTCCACGTTTAAGACTCATTTTAAATAATGGCTTAAAGCAAACCAGAACTGTGATCACTTTTAACTTCACATGTTGCATAATGTCTGTTGTCCTCTACTATTTGTGTATTGTATACCTGCATCTATATATTGTTGCTTGTAATGTTCTGATTTTGTTACCCGTTTACGGACTATGGATGTAAATTAGCATTCTTGCTAACTCCGGCAAGTTTAGGCCTACATCTTGTATTTTATACTGATGTTCATTAACAACGatcaaataagaaaaaaagaaaagagaatttttttttttttttaaataatgtgaaaacaggcaaacaataaaaaacaaacaaatataataGGGTATAtggtatatatgtataataaacATCTCTAACTAACTGTCCATGAGAGGACACTGGGGGCGCTGTAACGTCTTCCATCTGTTTCGAAGTgaacagaaaagaagaaaaaggagcaAGTCGGTGTAACGGAAACAAAGATCAGACATTAACAGGATGTCTCACTCGTATAAAACCTGCCCACTCTTGCAGAGTGAaagaaaaatgcagagagaTGGCTTATAAACTAGGCCTAGGCTACATGCAATATTTGGCCACGAGACCACTATTTATTCCATTCTTATATCAAAACCGTGATTTTCAAAAGACCAAGTAGAAGTAAAACTATTGCTAAACGTAGGCCTAATGTTAGTGATTACCATAACACAACCAGGCTATGTATTATGGTAATCGCTAACATTACCTACTGTTGAATTTGCAGGACTTGATCTTGATTTCCCATGTTGGTGTGTTGCAATTTGCAATTATCAAATCTCACATGCTAATTTAAAGTGTAGATCAAATACTTTTTTATGTGCTTTAAACATAAAGGGACCATTGCTAAATACCAAATAAGTATAACCATATCCCCCTATGCAGAGAAATAGGCTACACTTTAAAATTCTAAATATATAAGCCTATCAATtcaaaagatactaaataaaacGAAATTTCACCATATGTATTTGTCAagaaaatgtcatgtttttataaTTGGCTTCTTCATTCAGAATAATGTTGGGGGTGTGAGCCCTGTTACATACTTCCCCTCATATCTTAGACTCTCTTTCTCGGGCCCCCTCTTTTCTCCAGCACAGGGAGTGTTATCTTCACACAACACCCGCCAGGGTCGAGGCCTGTGCTGTGTCTCGTCTTCATTTGCTCTCACGCGAAGCGGTACATTCTGCTCCTGTTTCACTTGTTATTATTACTCAATGTATTTTGCTCGAGGCCACTGTGACCCTAACCATCTTATATTTATGGATTAAGCTAAATAAGCatatacaaaaacacacttgGTCTCTTATGGAAACCTTTTACATTCTTATTATATGTATCTGCAAATATTAAGAAAATTATTCTACAATAAATACATCAAAAATATCCAACATGGATTTATTGTGGAGAACAAAGAGAGTAATAATGTTATTGGTAACATATTATGCAAATGCAATAACAAATACAAAACTACAAcactaactttaaaaaaaaataatgaaataaccTCTAATCTCTTTAGACTCGTACATGtgttgttttagtttatttttgctCTATTATAATTGTATTAATGATGTGGTCATTGTGAACTTGATATTTCATAGATTAGCTTTTTAA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
XR_005638112.1 lncRNA downstream 256203 10639747 ~ 10660499 (-) True LOC120553135
TU308074 lncRNA downstream 257775 10602594 ~ 10658927 (-) True G227127
TU308027 lncRNA downstream 378286 10538204 ~ 10538416 (-) True G227089
XR_005638174.1 lncRNA downstream 378865 10509731 ~ 10537837 (-) True LOC120553506
TU307913 lncRNA downstream 632617 10274332 ~ 10284085 (-) True G227020
XR_005638210.1 lncRNA upstream 7735 10940378 ~ 10942825 (-) False LOC120553801
TU308148 lncRNA upstream 7746 10940389 ~ 10942789 (-) True LOC120553801
TU308149 lncRNA upstream 7746 10940389 ~ 10942789 (-) False LOC120553801
XR_005638209.1 lncRNA upstream 7949 10940592 ~ 10942825 (-) False LOC120553801
TU308150 lncRNA upstream 8388 10941031 ~ 10942789 (-) False LOC120553801
XM_039791983.1 mRNA downstream 125 10910337 ~ 10916577 (-) False fam3c
XM_039791987.1 mRNA downstream 129 10910337 ~ 10916573 (-) False fam3c
XM_039791985.1 mRNA downstream 139 10910337 ~ 10916563 (-) True fam3c
XM_039791986.1 mRNA downstream 141 10910337 ~ 10916561 (-) False fam3c
XM_039791984.1 mRNA downstream 144 10910337 ~ 10916558 (-) False fam3c
XM_039791052.1 mRNA upstream 54367 10987010 ~ 11010105 (-) False LOC120553011
XM_039791050.1 mRNA upstream 54367 10987010 ~ 11010105 (-) True LOC120553011
XM_039791051.1 mRNA upstream 54367 10987010 ~ 11010101 (-) False LOC120553011
XM_039791245.1 mRNA upstream 337351 11269994 ~ 11448442 (-) True snd1
XM_039792505.1 mRNA upstream 525938 11458581 ~ 11482578 (-) False hgfa
TU308019 other downstream 393740 10513494 ~ 10522962 (-) True G227082
unassigned_transcript_1485 other downstream 720269 10196347 ~ 10196433 (-) True trnay-gua_61
unassigned_transcript_1484 other downstream 720832 10195784 ~ 10195870 (-) True trnay-gua_60
XR_005638146.1 other downstream 2161870 8572959 ~ 8754832 (-) False ppfia2
XR_005638148.1 other downstream 2230765 8565242 ~ 8685937 (-) False ppfia2
TU308180 other upstream 47555 10980198 ~ 10981259 (-) True G227197
XR_005638189.1 other upstream 691366 11624009 ~ 11676832 (-) False pcloa
XR_005638137.1 other upstream 906301 11838944 ~ 11848941 (-) False cracr2ab
TU308500 other upstream 1352283 12284926 ~ 12288154 (-) True G227429
TU308872 other upstream 2587622 13520265 ~ 13529778 (-) False LOC120553470

Expression Profile


XM_039791981.1 Expression in all Baseline Samples

Bar chart with 13 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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XM_039791981.1 Expression in each Bioproject

Bar chart with 8 bars.
XM_039791981.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 14.
End of interactive chart.