RNA id: XM_039791986.1


Basic Information

Item Value
RNA id XM_039791986.1
length 1515
RNA type mRNA
GC content 0.43
exon number 10
gene id fam3c
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 10910337 ~ 10916577 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGCTCAGCTGTCATTACACGAATGTTGTCAGTGTAGGGCTTCGGGAATCAGACCGAGGGTTTCGTGGTTACCGTGGCAATTGAACAGGTAACGTTAAGCAAGGTTGTTAGTTGTGGTTCAACTGGCTGGAGGCGAAGATGGTCAGGGCTGGCGGTGTTTTGAAGTTTGCAGCGCTTATCTTTGCATTCCTCCTAGCAGTCTTTCTGGCTTTTCAGCTGCTAGAGATCAACCTCGACTTCAAACTGAGCAGTGTGATTTCAAGATCTATGCCAGTGAATGAAGGCTCAGCAAAGCCAGTCAGGTACAAGTGTGGGCTGTCCAAGTCATGTCCTCTTGGACACTTTGCCTTCAAGATGACGAGTGGCGCGGCCAGTGTGGTGGGGCCCAGAATCTGTCTGGAGGACAAATTACTAATGAGCGGTGTGAAGAACAACGTGGGGAGAGGAATCAACATTGCCCTGGTTGATGGGAGAACAGGGGATGCTATTAAGACTGAGTTTTTTGATATGTGGGCAGGAGATGTGGCTCCCTTCATTAAATTCCTGAAGGAAATTGATGAAGGGACAGTCGTGATGATGGCGTCATTTGATGATCCCTCAACAAAACTCAATGATGAAGCCAGGAAGCTAATTGCTGATCTGGGTAGCTCAGCTGTCAGTAATTTGGGTTTCCGCGATAACTGGATCTTTGTCGGAGGGAAAGGCATCAAGACCAAGAGTCCGTTTGAGCAGCATATAAAGAACAGTGCAGACACTAACAAATTTGAGGGATGGCCCGAGGTGTTGGAGATGGAAGGCTGCGTGCCTCAGAGGCAGGACTGAGAAGCGTCATTTTTTACAGCTCTCAAGCATGTTATTTTACCGACCAGAACCAAATCTCTCCAGAAGATATTAGAAGAAAAGAGAAGCCACTGTGCCCTGAGCAGGAACGTGAAACTTGGACCTTCTCCCTCTCACTTCTTCTGTTTGGATACCATTATGTAGATGCCCATTGGGGCTTGTTGGGAAGTAGTAGAGTATACTGATTAAAGGGGGCTTACCTTTGATTATTGGCATACTGTCTCGCTTTCCATCGGTGAGGCTCACAGACTTAGCAGTGATAGAGCGTTGCATTATTGAACTGTTGCTGATGGGAATGGATGTCATAGCCCAGattctttgggggggggggctaagTTTCCATTACCTGCTACCTGCCTTAATCTCATGATCGAATTCCTGGTTTTTAACCAACATGATCTTGTGattccttttttattctttcagAGTTgcgtttatttaaaaaaacaaacaaaaaaaaactactttgtATTAACAGGGTTTGAAGATGCTTCTTGTCATGAAATTATAACCAAATGTACCAAATTCACTGTGAAAtttgtaaatatttgtttttaggGGAGGATTTCAAAGATCCTTATTTAATGAGCAttgtaataattatataatttcttaaaataaatgatattgTTAGTGATGTGTGAGTGGATTAAAAGTGTTTTATTTCTAGCAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638112.1 lncRNA downstream 249838 10639747 ~ 10660499 (-) True LOC120553135
TU308074 lncRNA downstream 251410 10602594 ~ 10658927 (-) True G227127
TU308027 lncRNA downstream 371921 10538204 ~ 10538416 (-) True G227089
XR_005638174.1 lncRNA downstream 372500 10509731 ~ 10537837 (-) True LOC120553506
TU307913 lncRNA downstream 626252 10274332 ~ 10284085 (-) True G227020
XR_005638210.1 lncRNA upstream 23817 10940378 ~ 10942825 (-) False LOC120553801
TU308148 lncRNA upstream 23828 10940389 ~ 10942789 (-) True LOC120553801
TU308149 lncRNA upstream 23828 10940389 ~ 10942789 (-) False LOC120553801
XR_005638209.1 lncRNA upstream 24031 10940592 ~ 10942825 (-) False LOC120553801
TU308150 lncRNA upstream 24470 10941031 ~ 10942789 (-) False LOC120553801
XM_039791369.1 mRNA downstream 58526 10842572 ~ 10851811 (-) True btg1
XM_039792428.1 mRNA downstream 133465 10772256 ~ 10776872 (-) True LOC120553735
XM_039792178.1 mRNA downstream 164546 10726630 ~ 10745791 (-) False dcn
XM_039792179.1 mRNA downstream 172853 10725365 ~ 10737484 (-) True dcn
XM_039792303.1 mRNA downstream 198157 10707687 ~ 10712180 (-) True lum
XM_039791981.1 mRNA upstream 141 10916702 ~ 10932643 (-) True si:dkey-159a18.1
XM_039791052.1 mRNA upstream 70449 10987010 ~ 11010105 (-) False LOC120553011
XM_039791050.1 mRNA upstream 70449 10987010 ~ 11010105 (-) True LOC120553011
XM_039791051.1 mRNA upstream 70449 10987010 ~ 11010101 (-) False LOC120553011
XM_039791245.1 mRNA upstream 353433 11269994 ~ 11448442 (-) True snd1
TU308019 other downstream 387375 10513494 ~ 10522962 (-) True G227082
unassigned_transcript_1485 other downstream 713904 10196347 ~ 10196433 (-) True trnay-gua_61
unassigned_transcript_1484 other downstream 714467 10195784 ~ 10195870 (-) True trnay-gua_60
XR_005638146.1 other downstream 2155505 8572959 ~ 8754832 (-) False ppfia2
XR_005638148.1 other downstream 2224400 8565242 ~ 8685937 (-) False ppfia2
TU308180 other upstream 63637 10980198 ~ 10981259 (-) True G227197
XR_005638189.1 other upstream 707448 11624009 ~ 11676832 (-) False pcloa
XR_005638137.1 other upstream 922383 11838944 ~ 11848941 (-) False cracr2ab
TU308500 other upstream 1368365 12284926 ~ 12288154 (-) True G227429
TU308872 other upstream 2603704 13520265 ~ 13529778 (-) False LOC120553470

Expression Profile