RNA id: XM_039792002.1


Basic Information

Item Value
RNA id XM_039792002.1
length 4783
RNA type mRNA
GC content 0.51
exon number 23
gene id anks1b
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 10288477 ~ 10522237 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCTCATCACTGCTGATCCAAGATGGGCTACTTACCAGGGCCCTCCCCTCGGTAGTTTCCATGTATTGCATCATATCTGTGATATCCTCATCAGAAACACTGAAAGGCTATACGGGCCGGCGTATGGTGAGGGAAATTGGGACTTTTCCACGCAGGCTCTCGCTGTATGTGTAATGGTTTGAAATCGGTGTAGCCTCACGCCGTTTGCAGGCGAGggaatgtgaatgtgtttttaatctTGCTGAATCTCTTTCGTTTAACtgccagagagaaagagactctTCAATCCAGACCGAGAATGGCAGTGCCCTCCACGAAGCAGCTCTCTTTGGGAAAATGGATGTAGTTCGCCTTCTGCTCGACTCAGcgaTCGACACCAATCTCAGAGACAGCCAGGGGAGAACAGCTCTGGAGATCCTGGGAGAACATCCTGCACAGAAATCCCAGCAGATCACTGCTGTCATccaagAATATGTTATGGACGAGATGGAAAGGAGGAGTATCGTGGAGGAGCCTGTTCGCAAGTGTCCGATCCCTGCTCCTCGAACCTCTGTTCCCTCGCCCTCTGCCTCCCCCTCGCTCAGACACAAGAaTGATGCTGTGACAAGCGAgctgtccaaactgctccaTGAGATCAAAAAGTGCCGGGACAGGGACTACTCCTTCGAGGAGCTCTGCCACACCATCTCCTCCCACTCCATGGACAGTTTTGGCAGCGGGCGGCTCTCTGACGAAGAACGCCCAGACCGACCCAATGGCACCCTGACCCGAGTCAAGGATTCAAAGTGTTCAGCAGAGATTGTCACCTCGCCATCTCTGGATGTTTTCCTGCCAGAGGACGAGGACAACCCGTATGAGTCCGTGACTACAGCCGTCACACGCAAACCCTGCTCCCTCGATATCAACCACCAGCTCAATGCCTTTCCACGCAATGGTCACTTGTCCCATGTAACGGTGAGTGAGGGGGAGCACGGTAACCATGGCAACTGCTCGACAGGCCCCACTCCAGACtgctcccccccctcccccgacACAGCCCTGAAGAACATTGAGAGAGTCATCCGCCCACAGCCCAAGCAGCGCACCTCTCTGTCTTCGTCCCTGGACGTCCAGAGGCCGGTCAACCGCAGCTGTGAGCCCAGTGAGGTGAGCTCATCCTTGGGCTACGCCAGCTTCAGCACCAGCCCCCCTGCCAGCCCCCCACTCAGCCCTAATCAGGAGGACTCTGCAGGCTCCAACGACGACTGTCCACTCACAGACGACGGGCCGTACCAGCGTGACCCGTCTCCTCCTACTCCGCTCTGCTCTTCCTTCACATCCAACGCTTTGTTGGAGGAGCGCAGAAAGAGCCACATTCCAGAGGAGTTTGCAGGCCTGCTTCATGGATCTTCCCCAGCTTGTGAAACCCCTGATACGCCTTACCATCTCTACAGCCCCAAACCCCGAAAATATGCCTCTACGGATGTCCAGAGCAGCTTGTTGCAGACCCCGGAGTTCAGCATCGTAATAGGAGGAGGACCCACTCAGATCTTCCCCAGGACGGGGAGCGAGTCATCACCTCAGAGGACCGCCAACGACCCCCAGAAGCCACAGGTGGTATACCGGACTATCTTCCACACTAGGGTCAACCAGGACCAGGCCCAAACCAGGAACTGTGAGCAAGCAGCTCAACCTTGTGGCTGGTCTTCACTGGGCCACCCACCCTCCAACTCCCCTGGTCAGAACGGGAAAGTTCCAGAGTTACGGGGGATCCAGACAGGAGGTGTGCCCAAGGGCAGTTCATTGGGTGCTGGCTACGAAGAGAGGGCTTGCACCCTGGGGAGGATGAGGTCCATGCCCCGCAGTGTTTTGGACTTGCAGTTGTCCAAGTCTCTGTCCAAATCTGATTCCAACCTAGTAGCTGTATCTCCCATACAGGAGGAGCACGGCTGGGGGTCTGGATCTCGTGGCCAGGGGCCTGGAAGTCCCAGCCCCGGAGAGGGTGCCAGCCCAGGGGGAAGACTGGAGAGAACGCCCTCCTTCACTGCTGAGTGGGAAGAGATCGACAAGATTATGAGCTCTATTGGGGCAGGAATAAGCAGTGGATTGGACATTAAGAAAGACACCTCAGGTCCCCGCTGCCCACTGCAGTCCGTGGGCCAGTGGCTTGACTCCATCGGCCTGGTCCAGTATGAGAACCACCTGCTGGCCAATGGATTTGACAACGTCCAGTTCATGGGCAGCAATGTGGTGGAAGACCAGGATCTGCTGGAGATTGGGATCCTTAACTCGGCCCACAGACAACGCCTCCTGCAGGCCATACGGCTGCTGCCCAGGGTGCGACCTGTCGGTTACGATGGCAACAACCCCACGTCAGTGGCAGAGTGGCTGGAGTCATTGGAGCTCGGTGACTACACCAAGTCTTTCCTCGTCAATGGTTACACCTCCATGGAGCTGGTCAAGAAGATCTGGGAGATCGAGCTCATCAATGTATTGAAGATCGGTCTTATCGGACACAGAAAGCGGATCCTTGCCTCATTGGGGGACCGGCTACACGAAGAAACCCCACAAAAACCTCCGCGGGCCATCTCCCTCAGGGAGCCCGGTGGGAACCACACTCCTCCCCAGCTCAGTCCGTCGGTGGGCCAGGCAGCGTACACAGCGGGGGTCCCGGGCGGATCTCTGGACGTGCAGCACCTCATCATGCAGGCGGACGCCCGGCGCAGGCAGCGCAGCAATGACAACTACTTCGAGGACGTGCCGCGATCCAAGCTGGAGCGACAGATGGCACAAGTCAGCATGGCAGGCGAGTGGTGCGAGCCGATCACGTTGCGTCCGCCCAACGAGGCCACCTCGTCCACTCCGGTGCAGTACTGGCAGCATCACCCCGAGAAGCTCATCTTTCAGTCCTGTGACTACGAAGCCTACTACCTGGGCTCCATGCTGGTGAAGGAGCTGAGAGGGACGGAGTCCACACAAGATGCTTGTGCCAAAATGAGGAAGTCGAcagaacagatgaagaaagtGCCGACCATTGTGCTCTCAGTGTCCTACAAAGGAGTTAAGTTCATTGACGCCACAAATAAGaACATCATAGCAGAACATGAGATTCGTAACATCTCGTGTGCGGCGCAGGATCCAGAGGATCTGTCTACGTTTGCCTACATCACCAAAGACCTCAAGTCCAGTCACCACTACTGCCACGTCTTCACTGCTTTTGATGTGAACCTGGCGTATGAGATCATTCTGACACTCGGCCAGGCCTTCGAGGTGGCCTACCAGCTGGCCCTGCAGGCCAGAAAGAGCGGCCACGGATCATCCACACTGCCTGAGAGCTTTGACAGCAAGCCCAGCAAACCTGTCCCCAAACCTCGAGTCAACATCCGCAAATCTATGGAGCAGCCGTCCATGGACCAGAAGGGCCACGCCAACGTGCCATGGATTGTGGAGCCGGGTCAGGAGGCCAAGAGAGGAGTCAACACCAAGGCAATGCCGGACGCTCATGTCTATTACTGTGGAATGCAAAGAATGTAGCCAGCCCTAAACACGGACcttgtcacacacacaatgcaaaaTGGACTACAAAAGGACTACAAACATGGATGCTACTCCACAGTGTTTAAGGTTGACTACCAAATTTTAACATCATTCATCCATATGATACTTGACACAGTAAACatgacaaacatacacactaaCAGGACTGCATCTTGACAGATGACTGTCTGCTCTGAATGTACACTTATTTGAAAGCAGCCTCAAGTTTCTGCAACTACAGCAGGAGCTGTGTAATGCGCCCAACTGGGACGTGTGACCTGTGAACTTTTGGATGGTCACCGTTTCTCCATGGAGACTGAGTATGGTTACAGGGCATCTGTTGGTAACAGACAATGGACTCGCTAAAGACACCACTGGGCATGTGTCAGTTTTGGCACGGGTTTAAGGACGTTTGGCTggctctttctttttcttcttctttgaacTCAGAAAATAATACCGAGATATATGCACAAGCGTGTAAATGTGATTGGACTAGCTGCAACACGCTGGAGATGCAACATGTGTGTCCTGGTGAGATGTCTCATAACGGATGAACCTACAGTATGTGAACAAAACAGCATCTggcgttaaaaaaaaataaaaaaataagtattcTATTCGTATTGCCcgacattttaatgtttaatatgagAGTATTATATTACCATGATGATTATGATTATTCTTGTGCAATTCTTGTCTACTGTTGTCTTAATGTTACATTATTTTTCTATGATATGAGATGAAAACATTAGGCTTGAAAATGATGGCCATCCTTTAAAAAATCAAAACTATATGATCATACTTGTACAAAGAGAGTGAATGTTGCAGGTGGCTAGCTAACTCTTGTCAGGTCAACCCTCCATCATTTCTCATGGGGCTCTACTCTTATCTAGCAGATGTACTATTTTAAACGCAGTATTACTGTATTATTTGGATGAGACGTTATCCAATTATAAAATGTACATAGATATTTTGCCAACTCATTGTTcatacatgtaatgtaaaagagaaaaaggattTGAAGTAAAGTATGTGGCACTGGAAAGAAGGTACCAAAATAAAAGTTGGAAATTAAAAGAAACCGGTAGATTGTATAGATTGTATTTTGAATGAAAACTGAAATGGGTTATTTGGTTACATCTCTGCTGACCAACTTATGTACATAGGCTTGGGCTTCCAGCACACAGATTTTTGTAATTTTGGCCATTATTTATATCCTTGTAAAGCACATGGAATAAAACATGAATTGTTAAAACCATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638107.1 lncRNA upstream 443377 9934175 ~ 9936593 (+) True LOC120553125
TU307795 lncRNA upstream 511885 9867575 ~ 9868085 (+) True G226930
TU307786 lncRNA upstream 553445 9796473 ~ 9826525 (+) True G226921
TU307787 lncRNA upstream 573368 9806242 ~ 9806602 (+) True G226922
TU307781 lncRNA upstream 625854 9751944 ~ 9754116 (+) True G226918
TU308026 lncRNA downstream 15959 10538196 ~ 10538689 (+) True G227088
TU308047 lncRNA downstream 103209 10625446 ~ 10627982 (+) True G227107
TU308048 lncRNA downstream 106571 10628808 ~ 10630212 (+) True G227108
TU308058 lncRNA downstream 143472 10665709 ~ 10667280 (+) True G227116
TU308091 lncRNA downstream 183673 10705910 ~ 10709545 (+) True G227139
XM_039792426.1 mRNA upstream 95870 10249758 ~ 10284100 (+) True uhrf1bp1l
XM_039792383.1 mRNA upstream 138465 10235034 ~ 10241505 (+) False LOC120553694
XM_039792382.1 mRNA upstream 140621 10235016 ~ 10239349 (+) True LOC120553694
XM_039792107.1 mRNA upstream 145314 10226629 ~ 10234656 (+) True arfgap3
XM_039791221.1 mRNA downstream 116351 10638588 ~ 10643771 (+) True depdc4
XM_039791219.1 mRNA downstream 126084 10648321 ~ 10659011 (+) True scyl2
XM_039791220.1 mRNA downstream 126084 10648321 ~ 10659011 (+) False scyl2
XM_039791229.1 mRNA downstream 149811 10672048 ~ 10674051 (+) True si:dkeyp-38g8.5
XM_039791053.1 mRNA downstream 426049 10948286 ~ 10986201 (+) True impdh1b
unassigned_transcript_1483 other upstream 184764 10195120 ~ 10195206 (+) True trnay-gua_59
unassigned_transcript_1482 other upstream 185454 10194430 ~ 10194516 (+) True trnay-gua_58
unassigned_transcript_1481 other upstream 187558 10192326 ~ 10192412 (+) True trnay-gua_57
TU307644 other upstream 1138621 9237264 ~ 9241349 (+) False ndufb2
XR_005638164.1 other upstream 1206750 9134594 ~ 9173220 (+) True lhfpl3
TU308063 other downstream 175017 10697254 ~ 10699718 (+) True G227121
TU308097 other downstream 209832 10732069 ~ 10737503 (+) True G227141
XR_005638076.1 other downstream 426048 10948285 ~ 10986201 (+) False impdh1b
TU308205 other downstream 580599 11102836 ~ 11112905 (+) False G227216
TU308207 other downstream 580599 11102836 ~ 11112905 (+) False G227216

Expression Profile