RNA id: XM_039792003.1


Basic Information

Item Value
RNA id XM_039792003.1
length 7179
RNA type mRNA
GC content 0.44
exon number 13
gene id atxn7l1
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 15094407 ~ 15126770 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aggagagaggaaaaaacgGCTCTCAGCAAAGCAACAAGAAGGAAGAGCAATGGCGACACTGGATCGCCAAATACCAAGTCCGGATACCTTCCTTTGCGAGCCTTGGTCTTCCTTCGTCAGTGCGGCTAAATTACGTTTTGTTGACAACTCGTCCTTGGATAAGAGCGAGAAACAGCTTTACTGCCTCGCTGAAGCCGTGAGGCTCAGCAAAGAAGAGATGCTTGTCTGCAGCCAGTTTCCAGCACTGGAGGATTTTTGTCTTGCTGTCTGCCATGTCTGCAATCAGGTGGTCACTCCTCATGGCATCCTCACACACTATGAGAAGCGTCACGGCTCCCCCGCCACCTCCAGGAGCCCCTTGGTCCCCATGAAGCCCAAAGCACCTGCAGTGGCCCCCGCGGTGGCTCCCAGTCCTGGGGACACGCGGGCCTTCAGGGTCCCTAAAGATTACCCTCACTCCTGCTTCAGCAAGGCTCCTCTTGCTGTCTATCCACCGAAGGGGGCACGGAACAAGACGTGTGTATCCCTTCCAGTCGTAAGCCTGGAGAAGATGCCCTGTCTCAGCCGTGCCGACTCTACATCACATGTGCACCTCaccacctcctcttcctcccccgcCTCCTCCCTCAAACCTCAGTCCCTCACTCCCGCGGCCTCCCAACGATCCAGCGACAAGCTCATGAACGGCCGTGGCACCAGCGGGGCGTCCACACCACGCTCCACCGCTTCGCCATCTTCTCTGGTCGGGCGGCCCAGTCCGGCACGCTCTCCACTAGACAGAGGGCTGTCGTCTACACCTTCGCCTTCCCTGCTGGACCGGAAACCCTCCCCGACCCCTTCCCCTACCCACCGATCTGGCACTCTGCCGCCCTCGTTGTCGTCGCCATTGGGGAAGAAGCAGCATAACGGGCCTAAGACTTCCTGCGGGTCGCAAAAAAGACTCTCGGGGAGAGTGTTTGATCCTAACAAGCACTGTGGGGTCCAGGACCCCGAGACTAAGCGGCCCTGCACACGGTCCCTCACCtgcaagACTCACTCCTTAACCCACCGCCGAAACGTCTCCGGCCGAAGCAAACATTTCAACATCCTCCTGGCCGAACACAAGGGGCGTGCAAAATTAAATGAAGGAGCGAAGGAGAAAGACAGGGACAGATCgcagggagggaaggaaggcaGCAGCCAGAGTATCTTGTCACAAGAGACAACATGTCCCAGCAAGCCTCACTGCCCAAATGGACGACCTCTGTCCATGCTGAAGCTACGGCTGGCAAATGCACACATACCCAGGGTTCCAGGCtccaccacctccacctccagtCCTCCTCCTGCCCCGGCCCTTAACCCAGAGCAGTCTCCCCACAGTTgggtggcagcagcagcagaaggcgGTCGACTTTCCAGTGATGAGGGAGACGCAGAGACTCTAGAGGACACTGACAGACCTGCCTTTCACTACTCCAATCGCCACCCACAGCCTTTAGGGTTTTGCGTATTCAGCAGCAGGCTCATGGGACGGGGCCACTATGTGTTTGACAGACGATGGGACAGGATGAGGCTGGCGCTCCAGAACATGGTAGAGAAACACCTGAACGCACAGATGTGGAGgaaggtGCCTCTGGCTGCTGAGagcctcctctccctctcctcctctggtaCCTCCCCCGTCACTTCCCAACAGACTCCCCCTCCCACCTCCGTCacttctcctcccctctcctccccctccaaCTCTCTTTCCTACACCGCCACATTTCCTCAGTCTGCATCCATTGCCGGGGTGTTCAGCATTCGAGACGCTCCGCAGCACGTCGCCCCAGTTTCTGCACTGGGTAAAGCCCGTAACGGCACGCATAAAGCCAGCCGCCCATCCAAAGACATGGTGGACTCTGTAGTGGGATCTAAGAGGAGAAAAAACTCTTcctactcctcctccttttctccttCTTCCTTGTTTCCGACTGTGGATAATCAAAAGAGGAACGGCAGCAGCTATCATCCAAGGTTACAAGGTTCAGGGGgggcagcagcaacagcagcaacccCAGCCAGGAAAAAGGGACTTGGGCACAGGGGAAGTAGGCTTTGGAGCAGCGGAGAGGACTGGCTGTCGCGAGCCGATGGGTCTCAAAGCCACAACTCACAGAACAGTCGCGAACTTGGCACGACCAGTATACCCTACTCACCCAACAGGGAGCCGGCCTCTGCCCCCCATCAGCCCCTGGCTTCCCCCTCCGGACCCTTGGCTTATAAAGAAGGAGcagaggggaggaagaggaggagtccCAGCTCGTACACAGGGAAGGCCAGCAAGCTGAGCAGACCGGGCGGGTTGGAGAGCCTCTTTGGGAATGGGAGCGACAGCGTGGGAATACTGGCTTCGGGGCCAGAGTCCCCAAGACATGCCAAGTTGCATCACTGACAGAAACCTGTTTCATGGACAGAATGTTGGGCAGCTGTGCAGCCCACCACCGtttgtgacctttgacctcaccACTCTTCCGCTGACAGCACCAATCAGACTGCTTTATCTCGATGGTTTCACCCCTATTCATCCAATGACGGTTCAGTTCACCTGCTGTGACATTGGGGATCTGGAGTCTTTGCCCACAGTTGGCTGGCAGTTACTTTCACTCTCCAACTTTAACCTTTGATAATGGATGGCTCCATCGCTGATGGAAAACTGCTGTGCCCTGACTATGGAATATGCCTCACGTTTTCAAGGCATTGGTAATATAATGCCACCACTGTACAATTTTGGgggagacattttttttttttttttttttaaacaatcagTTTATTTTCTGGTTGTTTTGACCATTTTCCTGATTCCTGTGTCTGGTCAGTGACAAGGAAAGAGGTCTGTGATTGTTATTGTGAGTAAGATGGCTGAAGGACCTACTGACACGACTACTGTAGGACTCAGCCTTCATTTATGCCACCTCAACACCCCCCAACCCACCTTCTTTTTCTTGATTTTAGCTTTCCCTCTTCCTCATAGATGGAAGCCAACAGCAGCTTTAACTTTTGGTTTTATCCagctttttcctctttttcaacctctttttctttatttctctccatctttctttccTACTTTTTGTCAACATCTCTACAATTCTCTTCTTCCCTTTATCCCCACCCCCCATCTCTCCCTATCCATCCCAGCATGCCTGTGTTCAAAGTGCACTTACAGCCCACGCTTCCCCCTTGCTTCCTTCTTCACTGACTCCAGCAGTGCCACACCAAGGACCTGTTCACacaagggaagaaaaaaagatctaTGTTACCAATGATGCCGATGTATTTCGATATAGGATTtgaagattgttttttttttcttagttcTGGTTTTAAATGTTGCAAGAAACACAAACCCCTGTCTGTGCGTCAGGACTTGCATCCAAAAAGGAATGATTACTACCGTGTTGGatcgtttttttaaatttttttattttattttattttttataatttatcgTTTGTTTTCCAACTGACCCTCAAGGTTTGAGCTAAAGAGACTTTTTGAGGAAAAGAGTCATTTCTATGGCATTTTGAAGAAATGTTGAAAGTATTATGATGGTTCATATTGTTGAAAATGTGTACATAtcgattattatttttgtatttattaataattGTCCCCTTTTACTAAATATGAGCTAAACAGAGTATTTTTGCCCCCATACCTAGGTCTGTGTTAAATGATATTGATGAGATTGGCCTGATTTCACAAAATCTTCAAGGAATTTGTTCATTAGCAAGTTTTTAAATTATTACTAattaatacacaaacacagcaaaatATGAACTTTGACTGTGGCTGCTGTGTATGCCATTTCCATTTCGCCGTGCAGACAGTTCACATACCGTGGCAAATTCtgaaaaagatatatatatatatatatatatatatatatatatatatatatatatatatattttattcagGCATGTTCTAATAACTGTTATGTGTAGCTTATATTGTTGTCTGACAAAAATATCTTAACTCAAGGAACACTCACATGTGGTTGCAAACTCCACAAAAGAAAACTGTTCCATTTCCATAAAAGTCAGAAATTTAATCGAGTATGTGCTATTTACTAATTGTTAAAGAATACTGTAAATTATacaatacagtatatgcacCAATATATGTCAGCCAAACTGCAACTTTGTGAAGTTTAATTGGCAGTAGCTTTCCAATAAGAAAGCAGAATACTTTTTCCAAAGATTTTatagtggttgtttttttttgctagaTCTTTTTGTCTCACCACTGCCTGCAaatggtgtattttattttttttcagcaataAGCAGCTTCTCCATTTCCATAAAGGTCCATCAACTGCACACTCAAAgtattttatttcagtaatttTTAGAATGCATGCTGACTTGACTCTTGAGTCTACtaaattttgtcacttttccaatGTGAACACACTACATACTCAAAACCTGCATAGAATGAGTCTGTAGTTTGAAATGGGGACATAGCCACAgccttcatcagcagatggagtgTACTCCGTTGCCCTGGAGACGGCTCAGGTGCCATCACATGAAGAGGGGGTCTAGTCCATAAATAACCCATGAGTTAAGTTTTAGTTATCTAAGTATTATATCTAAGATTAATATGGAACCTTCACAGTCAATTATTTTGATGCATTATTCACCATGTCAAACGTAAGAAATGATGTCATCGTTTAACTGGGCTATAGAATTTGACTTGGTCCAAAATGTAAGTTGACAGTCATGTTTCTACACTGGTATTTCTTCACATTTCTAATAGCTCAACAATTTGTATCTGACGTACGCTAATGAACAAAGGTTGATTTTGTGACACCAGGCCTTGGTTAGTATTTTCATATAAAGGGACCCACATTCCTTTTTGCCTGTGGATCCACCCTCTTTCATACTTCTTCCATTGTTCAAAACTATAGCTATATATTTTTCAGCCGTCTTTATCTTTCAGTACCGATTGGTCTAGTCTCAGTGCAATTATGCTTGttgtgtatgtaaaaaaaaaaaatcaaagccaGGTCAAAGTGCTTTCACTTACTTCTCAGCTGCACCCGTCAAGATTGGTACCAATTCTTCTCTGGTGGCTCAGTAGTTCACTGCGCTGTAAATGCAGCACATTCATTCCTTTGAACCTTTTAATGTCTTCGAAATAACgacaagattaaaaaaaaaaaaaagttaaaagtggTATTATTAAATGgtaaaaaccttttaaaatgtctgaaaagtACCCTGTCTATTCATCCGGTGTTGCTGATAAAGCCAAAGTAACTGAAACCATTTAGATTTGCTTGGTAGCAGCGTGACGCTGTAAGCGCCGCTCCCACCTGGTACTCGCTGGCTGCTTCAAATAACtatttgttgatgtttttttgtcgtttttttttgtctcaaaagCATCGAAGCACTATTGATGTACAAAATCAGTTGTATTCGTGTTAAAGCTTTTTCCAAGTGCTTCCCATGATGACACTTTATTCTTCAGTGTGTGAGATCGTCAAAGTACTCTAGATCAGTTTAGTGATACTTTATTTTACTGTAGACACGCAAGGTGTATCCGGGGTACTCGTGGTGTACAGTTAACTCGTTGCAATTACAGTGTACACTTTCTCTGTGTCACGCAACGTACCAACAGATGTACTAGTACATAGATGGTTTATGTTGGTTTAATGGCTGAAAACAATGGTTTTAGGTGGGAATTAAAGGTTTAGTTTCCGCTCAGTGTGTCCGCAGATCAAAGATGACGATCTTACCGCTGACATGTTTTTGGGGAATCCCACCGTGATTTACTGTTTATGGTAATAGAAATGGGAAGTTACCATCTGTTGCAGCTAAAATTAAGACAACGTTCATGAATTTAAGAGCAGTTGTATATTATCTTTGCTGTTGAATTTTATGGAGgtattgacagttttttttttattttttttttaaagccaaccctctttcctttttctttttttgcactttgTCATAATGCCCAGATCTTTAATCAACttctatttatataaatatttgagatattaaaaacaaatctatatctatatatttgtAATGGTGTTTCTGGCAACTACAGTAAAAGAAGATGAGTGTATTCTCAGTGAGTCGGCCCCTAAACCAGTTGTTGTATTTGATCCAAACTGTGTAGAATGTctgaaaaaatgccttgtaagATTCGCTGTTTATTCACTCTCACTGAAGTTGGATCAGAACAAGGATTTTCCCATCAAAACAACTAAACACttgctgtataaaaaaaaaatagtcttaTATCCAAGCTTTTATTAAATGATTGAAAGTGGATGTTGTGTTATTTGTAAATCAAAGATGCAGCTTTTGAATTGGAAGGAAAGTCCCActgattttttgttgttgttgttgttgttgttttgtacaAGTTGAGTGGTTTCCGTGAAAGGTTTCTTGATCATTGATGTCTTACAAGatattttgtgttgtttgagAAGAGCAAACACGTCTTCTGTGGCTGTCAGTGTTTCACAAAGGAGCTTCAATTATGTATTGTGTGCTTAAATTCTTACCAGATGCATCTGTAATTGCCATGTTCATTATTGAAACCACTGAACTGGGCTGAGACCTGAGAAGAGTTGCAACATTTGACACTTTTCCCCAAATTCAGTTGTCATGATTTCTTTTCCCCCAGCATCCTGGCTCCAGTGACTGGctctttggtccagactgaaacatCTCAACAGCTATCAGACGAAGAGGATCAATCCTACTGACTGGTGATCCCATGACCTTTCCTCTTAGTGCTACCAGCAGCGGAAAGCGGACTTCTGAGAACTAAGCTCTGCTCTGTCCGGGCATTCACCAACATGAAAGGACACTGCTGGCAGTAAACAGACATTTTCACGCTCTCCTGTGCTTTTCTACTCATCCTTACCTGTGAATCTTTATGAAACAAGGTCAGGAAATATGTAAATAGTGCATTTTTGTTATGATAGTAACCGTAACTGCCTCGTCCAAACTTTAGCAACACATTCCTTCTGTCCGTCATCATTTACAAACTGTGCCAAAGTTTTGCTGCTCAACACGTGTGTTTGTCTTGTGGTAGAGCTCACAGATTATTAATATAACTAATTGAGTCAAGggaaaaaacaattaaatttaACATTGACCTTAAAA

Function

GO: NA

KEGG:

id description
K11318 ATXN7, SCA7; ataxin-7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309355 lncRNA downstream 41122 15047327 ~ 15053285 (-) False grm8a
TU309363 lncRNA downstream 301938 14792245 ~ 14792469 (-) True G228022
TU309362 lncRNA downstream 319559 14774317 ~ 14774848 (-) True G228021
TU309361 lncRNA downstream 323440 14770498 ~ 14770967 (-) True G228020
TU309360 lncRNA downstream 324160 14769998 ~ 14770247 (-) True G228019
XR_005638141.1 lncRNA upstream 42873 15169643 ~ 15178955 (-) True LOC120553257
TU309413 lncRNA upstream 154696 15281466 ~ 15281669 (-) True G228063
TU309416 lncRNA upstream 163469 15290239 ~ 15290493 (-) True G228066
TU309417 lncRNA upstream 164104 15290874 ~ 15291223 (-) True G228067
TU309426 lncRNA upstream 194063 15320833 ~ 15345644 (-) True G228075
XM_039792430.1 mRNA downstream 4424 15055475 ~ 15089983 (-) True znf800b
XM_039791865.1 mRNA downstream 46956 14634966 ~ 15047451 (-) True grm8a
XM_039791868.1 mRNA downstream 47205 14793765 ~ 15047202 (-) False grm8a
XM_039791866.1 mRNA downstream 47205 14793765 ~ 15047202 (-) False grm8a
XM_039791867.1 mRNA downstream 47205 14793765 ~ 15047202 (-) False grm8a
XM_039791363.1 mRNA upstream 2178 15128948 ~ 15140316 (-) True sypl1
XM_039791364.1 mRNA upstream 15142 15141912 ~ 15166232 (-) True nampt1
XM_039791479.1 mRNA upstream 77678 15204448 ~ 15257989 (-) False ccdc146
XM_039791478.1 mRNA upstream 77678 15204448 ~ 15257988 (-) True ccdc146
XM_039792209.1 mRNA upstream 204680 15331450 ~ 15338097 (-) True LOC120553603
TU309380 other downstream 6078 15062263 ~ 15088329 (-) False znf800b
TU309376 other downstream 32978 15060003 ~ 15061429 (-) False znf800b
unassigned_transcript_1491 other downstream 1284728 13809607 ~ 13809679 (-) True trnak-cuu_13
TU308919 other downstream 1435135 13651662 ~ 13659272 (-) True LOC120553486
TU308872 other downstream 1564629 13520265 ~ 13529778 (-) False LOC120553470
TU309610 other upstream 644468 15771238 ~ 15791853 (-) True G228191
TU309744 other upstream 1622072 16748842 ~ 16823432 (-) True G228291
TU309971 other upstream 2168352 17295122 ~ 17302198 (-) True G228465
TU310227 other upstream 2703902 17830672 ~ 17927705 (-) False tafa5a
TU310229 other upstream 2703902 17830672 ~ 18100995 (-) False tafa5a

Expression Profile