RNA id: XM_039792009.1


Basic Information

Item Value
RNA id XM_039792009.1
length 6208
RNA type mRNA
GC content 0.45
exon number 12
gene id atxn7l1
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 15094407 ~ 15126770 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTACGTTTTGTTGACAACTCGTCCTTGGATAAGAGCGAGAAACAGCTTTACTGCCTCGCTGAAGCCGTGAGGCTCAGCAAAGAAGGTAGCTGGGGTATAGTTTCCATGTGAGAcaatcagagagagacagacagtcctGGACCAcaccctctcattccctctccGACTCTCCCACAAAGACATGCATAGCAAAAACCAGAAGCGTCACGGCTCCCCCGCCACCTCCAGGAGCCCCTTGGTCCCCATGAAGCCCAAAGCACCTGCAGTGGCCCCCGCGGTGGCTCCCAGTCCTGGGGACACGCGGGCCTTCAGGGTCCCTAAAGATTACCCTCACTCCTGCTTCAGCAAGGCTCCTCTTGCTGTCTATCCACCGAAGGGGGCACGGAACAAGACGTGTGTATCCCTTCCAGTCGTAAGCCTGGAGAAGATGCCCTGTCTCAGCCGTGCCGACTCTACATCACATGTGCACCTCaccacctcctcttcctcccccgcCTCCTCCCTCAAACCTCAGTCCCTCACTCCCGCGGCCTCCCAACGATCCAGCGACAAGCTCATGAACGGCCGTGGCACCAGCGGGGCGTCCACACCACGCTCCACCGCTTCGCCATCTTCTCTGGTCGGGCGGCCCAGTCCGGCACGCTCTCCACTAGACAGAGGGCTGTCGTCTACACCTTCGCCTTCCCTGCTGGACCGGAAACCCTCCCCGACCCCTTCCCCTACCCACCGATCTGGCACTCTGCCGCCCTCGTTGTCGTCGCCATTGGGGAAGAAGCAGCATAACGGGCCTAAGACTTCCTGCGGGTCGCAAAAAAGACTCTCGGGGAGAGTGTTTGATCCTAACAAGCACTGTGGGGTCCAGGACCCCGAGACTAAGCGGCCCTGCACACGGTCCCTCACCtgcaagACTCACTCCTTAACCCACCGCCGAAACGTCTCCGGCCGAAGCAAACATTTCAACATCCTCCTGGCCGAACACAAGGGGCGTGCAAAATTAAATGAAGGAGCGAAGGAGAAAGACAGGGACAGATCgcagggagggaaggaaggcaGCAGCCAGAGTATCTTGTCACAAGAGACAACATGTCCCAGCAAGCCTCACTGCCCAAATGGACGACCTCTGTCCATGCTGAAGCTACGGCTGGCAAATGCACACATACCCAGGGTTCCAGGCtccaccacctccacctccagtCCTCCTCCTGCCCCGGCCCTTAACCCAGAGCAGTCTCCCCACAGTTgggtggcagcagcagcagaaggcgGTCGACTTTCCAGTGATGAGGGAGACGCAGAGACTCTAGAGGACACTGACAGACCTGCCTTTCACTACTCCAATCGCCACCCACAGCCTTTAGGGTTTTGCGTATTCAGCAGCAGGCTCATGGGACGGGGCCACTATGTGTTTGACAGACGATGGGACAGGATGAGGCTGGCGCTCCAGAACATGGTAGAGAAACACCTGAACGCACAGATGTGGAGgaaggtGCCTCTGGCTGCTGAGagcctcctctccctctcctcctctggtaCCTCCCCCGTCACTTCCCAACAGACTCCCCCTCCCACCTCCGTCacttctcctcccctctcctccccctccaaCTCTCTTTCCTACACCGCCACATTTCCTCAGTCTGCATCCATTGCCGGGGTGTTCAGCATTCGAGACGCTCCGCAGCACGTCGCCCCAGTTTCTGCACTGGGTAAAGCCCGTAACGGCACGCATAAAGCCAGCCGCCCATCCAAAGACATGGTGGACTCTGTAGTGGGATCTAAGAGGAGAAAAAACTCTTcctactcctcctccttttctccttCTTCCTTGTTTCCGACTGTGGATAATCAAAAGAGGAACGGCAGCAGCTATCATCCAAGGTTACAAGGTTCAGGGGgggcagcagcaacagcagcaacccCAGCCAGGAAAAAGGGACTTGGGCACAGGGGAAGTAGGCTTTGGAGCAGCGGAGAGGACTGGCTGTCGCGAGCCGATGGGTCTCAAAGCCACAACTCACAGAACAGTCGCGAACTTGGCACGACCAGTATACCCTACTCACCCAACAGGGAGCCGGCCTCTGCCCCCCATCAGCCCCTGGCTTCCCCCTCCGGACCCTTGGCTTATAAAGAAGGAGcagaggggaggaagaggaggagtccCAGCTCGTACACAGGGAAGGCCAGCAAGCTGAGCAGACCGGGCGGGTTGGAGAGCCTCTTTGGGAATGGGAGCGACAGCGTGGGAATACTGGCTTCGGGGCCAGAGTCCCCAAGACATGCCAAGTTGCATCACTGACAGAAACCTGTTTCATGGACAGAATGTTGGGCAGCTGTGCAGCCCACCACCGtttgtgacctttgacctcaccACTCTTCCGCTGACAGCACCAATCAGACTGCTTTATCTCGATGGTTTCACCCCTATTCATCCAATGACGGTTCAGTTCACCTGCTGTGACATTGGGGATCTGGAGTCTTTGCCCACAGTTGGCTGGCAGTTACTTTCACTCTCCAACTTTAACCTTTGATAATGGATGGCTCCATCGCTGATGGAAAACTGCTGTGCCCTGACTATGGAATATGCCTCACGTTTTCAAGGCATTGGTAATATAATGCCACCACTGTACAATTTTGGgggagacattttttttttttttttttttaaacaatcagTTTATTTTCTGGTTGTTTTGACCATTTTCCTGATTCCTGTGTCTGGTCAGTGACAAGGAAAGAGGTCTGTGATTGTTATTGTGAGTAAGATGGCTGAAGGACCTACTGACACGACTACTGTAGGACTCAGCCTTCATTTATGCCACCTCAACACCCCCCAACCCACCTTCTTTTTCTTGATTTTAGCTTTCCCTCTTCCTCATAGATGGAAGCCAACAGCAGCTTTAACTTTTGGTTTTATCCagctttttcctctttttcaacctctttttctttatttctctccatctttctttccTACTTTTTGTCAACATCTCTACAATTCTCTTCTTCCCTTTATCCCCACCCCCCATCTCTCCCTATCCATCCCAGCATGCCTGTGTTCAAAGTGCACTTACAGCCCACGCTTCCCCCTTGCTTCCTTCTTCACTGACTCCAGCAGTGCCACACCAAGGACCTGTTCACacaagggaagaaaaaaagatctaTGTTACCAATGATGCCGATGTATTTCGATATAGGATTtgaagattgttttttttttcttagttcTGGTTTTAAATGTTGCAAGAAACACAAACCCCTGTCTGTGCGTCAGGACTTGCATCCAAAAAGGAATGATTACTACCGTGTTGGatcgtttttttaaatttttttattttattttattttttataatttatcgTTTGTTTTCCAACTGACCCTCAAGGTTTGAGCTAAAGAGACTTTTTGAGGAAAAGAGTCATTTCTATGGCATTTTGAAGAAATGTTGAAAGTATTATGATGGTTCATATTGTTGAAAATGTGTACATAtcgattattatttttgtatttattaataattGTCCCCTTTTACTAAATATGAGCTAAACAGAGTATTTTTGCCCCCATACCTAGGTCTGTGTTAAATGATATTGATGAGATTGGCCTGATTTCACAAAATCTTCAAGGAATTTGTTCATTAGCAAGTTTTTAAATTATTACTAattaatacacaaacacagcaaaatATGAACTTTGACTGTGGCTGCTGTGTATGCCATTTCCATTTCGCCGTGCAGACAGTTCACATACCGTGGCAAATTCtgaaaaagatatatatatatatatatatatatatatatatatatatatatatatatatattttattcagGCATGTTCTAATAACTGTTATGTGTAGCTTATATTGTTGTCTGACAAAAATATCTTAACTCAAGGAACACTCACATGTGGTTGCAAACTCCACAAAAGAAAACTGTTCCATTTCCATAAAAGTCAGAAATTTAATCGAGTATGTGCTATTTACTAATTGTTAAAGAATACTGTAAATTATacaatacagtatatgcacCAATATATGTCAGCCAAACTGCAACTTTGTGAAGTTTAATTGGCAGTAGCTTTCCAATAAGAAAGCAGAATACTTTTTCCAAAGATTTTatagtggttgtttttttttgctagaTCTTTTTGTCTCACCACTGCCTGCAaatggtgtattttattttttttcagcaataAGCAGCTTCTCCATTTCCATAAAGGTCCATCAACTGCACACTCAAAgtattttatttcagtaatttTTAGAATGCATGCTGACTTGACTCTTGAGTCTACtaaattttgtcacttttccaatGTGAACACACTACATACTCAAAACCTGCATAGAATGAGTCTGTAGTTTGAAATGGGGACATAGCCACAgccttcatcagcagatggagtgTACTCCGTTGCCCTGGAGACGGCTCAGGTGCCATCACATGAAGAGGGGGTCTAGTCCATAAATAACCCATGAGTTAAGTTTTAGTTATCTAAGTATTATATCTAAGATTAATATGGAACCTTCACAGTCAATTATTTTGATGCATTATTCACCATGTCAAACGTAAGAAATGATGTCATCGTTTAACTGGGCTATAGAATTTGACTTGGTCCAAAATGTAAGTTGACAGTCATGTTTCTACACTGGTATTTCTTCACATTTCTAATAGCTCAACAATTTGTATCTGACGTACGCTAATGAACAAAGGTTGATTTTGTGACACCAGGCCTTGGTTAGTATTTTCATATAAAGGGACCCACATTCCTTTTTGCCTGTGGATCCACCCTCTTTCATACTTCTTCCATTGTTCAAAACTATAGCTATATATTTTTCAGCCGTCTTTATCTTTCAGTACCGATTGGTCTAGTCTCAGTGCAATTATGCTTGttgtgtatgtaaaaaaaaaaaatcaaagccaGGTCAAAGTGCTTTCACTTACTTCTCAGCTGCACCCGTCAAGATTGGTACCAATTCTTCTCTGGTGGCTCAGTAGTTCACTGCGCTGTAAATGCAGCACATTCATTCCTTTGAACCTTTTAATGTCTTCGAAATAACgacaagattaaaaaaaaaaaaaagttaaaagtggTATTATTAAATGgtaaaaaccttttaaaatgtctgaaaagtACCCTGTCTATTCATCCGGTGTTGCTGATAAAGCCAAAGTAACTGAAACCATTTAGATTTGCTTGGTAGCAGCGTGACGCTGTAAGCGCCGCTCCCACCTGGTACTCGCTGGCTGCTTCAAATAACtatttgttgatgtttttttgtcgtttttttttgtctcaaaagCATCGAAGCACTATTGATGTACAAAATCAGTTGTATTCGTGTTAAAGCTTTTTCCAAGTGCTTCCCATGATGACACTTTATTCTTCAGTGTGTGAGATCGTCAAAGTACTCTAGATCAGTTTAGTGATACTTTATTTTACTGTAGACACGCAAGGTGTATCCGGGGTACTCGTGGTGTACAGTTAACTCGTTGCAATTACAGTGTACACTTTCTCTGTGTCACGCAACGTACCAACAGATGTACTAGTACATAGATGGTTTATGTTGGTTTAATGGCTGAAAACAATGGTTTTAGGTGGGAATTAAAGGTTTAGTTTCCGCTCAGTGTGTCCGCAGATCAAAGATGACGATCTTACCGCTGACATGTTTTTGGGGAATCCCACCGTGATTTACTGTTTATGGTAATAGAAATGGGAAGTTACCATCTGTTGCAGCTAAAATTAAGACAACGTTCATGAATTTAAGAGCAGTTGTATATTATCTTTGCTGTTGAATTTTATGGAGgtattgacagttttttttttattttttttttaaagccaaccctctttcctttttctttttttgcactttgTCATAATGCCCAGATCTTTAATCAACttctatttatataaatatttgagatattaaaaacaaatctatatctatatatttgtAATGGTGTTTCTGGCAACTACAGTAAAAGAAGATGAGTGTATTCTCAGTGAGTCGGCCCCTAAACCAGTTGTTGTATTTGATCCAAACTGTGTAGAATGTctgaaaaaatgccttgtaagATTCGCTGTTTATTCACTCTCACTGAAGTTGGATCAGAACAAGGATTTTCCCATCAAAACAACTAAACACttgctgtataaaaaaaaaatagtcttaTATCCAAGCTTTTATTAAATGATTGAAAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309355 lncRNA downstream 43050 15047327 ~ 15053285 (-) False grm8a
TU309363 lncRNA downstream 303866 14792245 ~ 14792469 (-) True G228022
TU309362 lncRNA downstream 321487 14774317 ~ 14774848 (-) True G228021
TU309361 lncRNA downstream 325368 14770498 ~ 14770967 (-) True G228020
TU309360 lncRNA downstream 326088 14769998 ~ 14770247 (-) True G228019
XR_005638141.1 lncRNA upstream 43003 15169643 ~ 15178955 (-) True LOC120553257
TU309413 lncRNA upstream 154826 15281466 ~ 15281669 (-) True G228063
TU309416 lncRNA upstream 163599 15290239 ~ 15290493 (-) True G228066
TU309417 lncRNA upstream 164234 15290874 ~ 15291223 (-) True G228067
TU309426 lncRNA upstream 194193 15320833 ~ 15345644 (-) True G228075
XM_039792430.1 mRNA downstream 6352 15055475 ~ 15089983 (-) True znf800b
XM_039791868.1 mRNA downstream 49133 14793765 ~ 15047202 (-) False grm8a
XM_039791866.1 mRNA downstream 49133 14793765 ~ 15047202 (-) False grm8a
XM_039791867.1 mRNA downstream 49133 14793765 ~ 15047202 (-) False grm8a
XM_039791869.1 mRNA downstream 58015 14634966 ~ 15038320 (-) False grm8a
XM_039791363.1 mRNA upstream 2308 15128948 ~ 15140316 (-) True sypl1
XM_039791364.1 mRNA upstream 15272 15141912 ~ 15166232 (-) True nampt1
XM_039791479.1 mRNA upstream 77808 15204448 ~ 15257989 (-) False ccdc146
XM_039791478.1 mRNA upstream 77808 15204448 ~ 15257988 (-) True ccdc146
XM_039792209.1 mRNA upstream 204810 15331450 ~ 15338097 (-) True LOC120553603
TU309380 other downstream 8006 15062263 ~ 15088329 (-) False znf800b
TU309376 other downstream 34906 15060003 ~ 15061429 (-) False znf800b
unassigned_transcript_1491 other downstream 1286656 13809607 ~ 13809679 (-) True trnak-cuu_13
TU308919 other downstream 1437063 13651662 ~ 13659272 (-) True LOC120553486
TU308872 other downstream 1566557 13520265 ~ 13529778 (-) False LOC120553470
TU309610 other upstream 644598 15771238 ~ 15791853 (-) True G228191
TU309744 other upstream 1622202 16748842 ~ 16823432 (-) True G228291
TU309971 other upstream 2168482 17295122 ~ 17302198 (-) True G228465
TU310227 other upstream 2704032 17830672 ~ 17927705 (-) False tafa5a
TU310229 other upstream 2704032 17830672 ~ 18100995 (-) False tafa5a

Expression Profile