RNA id: XM_039792012.1


Basic Information

Item Value
RNA id XM_039792012.1
length 2534
RNA type mRNA
GC content 0.49
exon number 13
gene id optn
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 20410195 ~ 20430496 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

caaagccagatatttccttcaagagttggtggagaccaaaaacaaagctcaaagaaagtaaaaaaaggacTGGCTCAGTTGGCCAGAAACATGATCGCCATTTCAACTTTATAAGCGTCATGGCGTCTGGAGGCCCCGTGATGAACGGCGACGTCTCATGCTCTCAGGGTCAGTCGGGTACGCTGGAGGAAACCCTGCAGCAGATGAACATCCTCATCCAGGAGAACCGAGACCTGAAAGAGGCCCTGCGTCAGACCAACCTGACGATGAAGGAGCGTTTCGAGGGTCTGTCTGCGTGGCGGGAGAAGCAGCGGGAGGAGCGGGGCTTCCTGGAGAGCAGGCTGGAGGAGGCTCGGGGCCGCATGGAGGAGCTGACCCTGGAACTGAACAAGAGGACGGCGGAGGAGGGGAGGACAGGGGGAGGCTTGCTGGCGGTGTCATCCAATCAGAGTGCAGAGCTGATTGCCCTGCGTGCCCAGGTTGCTCGCCTGCAGGCAGAGAAGAACGACCTGGTGGCCATGAACTCTGAGCTGCAGCTGAGAGCCGACAACTCACAAGACGACTCCTTCATTGAGATCATCAGAGTCTCGGATGGAGGTGTAGACGGCACGAACGATGCGTGTGGTTCGGAACACGGCAGACGTCAGGAACTGAGCATGACGGCATCCCAGCAGGACAGCAAGGAGATGACTATCAGCCAGCTCCTCCAGTCACTGAGGAACGAGACGCAGCGCGCCGAGCGGCTGCAGGCCGAGCTGCAGGCTTCTTCTGCCAGAATTAGAGAGCTGGAAGAGAGGAAGTCTAATGTGGAGGAATCAACACAGACCCAAGCAGAGACCAAGGAGGATTCTGGGAAAGAGGAAAAGgCAGCATCTGAGGTGGAGAATCTGAAGTGTCAGATGAGAACGCTGTTTAAAGAACTGCAGCAGGCCCAGAGCAAGCTGGATGAAGCAGAAGGCATGAAGAAGAACCTGCAGGACAGATGTCGGGAGGTGGAGCAGGACGTGGTCACTCTGAAGGCTCAGCTGGTGGAGAAGCAGGCTGTTCAGTCGGAGAACGACCGGCTCAAGCTGCAGGTGGACAGCATGCAGGCTCAGGGCCAGATGGAGCAGAGGAAGGCTGGGGAGGAGAGGAACAACCTGGCCCAGCTGAAGGATGCCTACACCAAGCTGTTTGAAGACTACAATGAACtcaaagaggagaagaagaagagagagTCTCAGCTGGTGCAGAAGGAGGTGGTGGACCAGCTGCAGGAGCGGCTGACTGCCGCTGAAGAGGCCCTGGCTGCTAAACAGAACCACATCGATCACATGAAGCAGGAGATCTacaagaaggaggaggagctgcagaCCATATCTGTGTTCCAGGCTCAGGCAGAGGTCTACTCCTCAGACTTCTACGCAGAGCGAGCAGCGAGGGAGAAACTCCACGAAGAGAGGGAGCGTCTGGCTGCTCAGCTGGAGTATGTAAAGAAGCAGAACACCCACCTGCAGGAGGAGATGGAATCACTGGGCAGGCGGTCGCTGAACGAGATGCAGAGGAGACATGTGTCACAGGGAGGAAATGCACACGGAGCTGGTGCTAGTCTGATTGGAAGAGGTACTGACTGGCAGCATCAGGGGAACATTCCCGAACACGCCTGTCCCAAGTGCAACGAGATCCTGCCGGACCTGGACTCCCTGCAGATCCACATCATGGACTGCATCAACTAGACCTCCATCATGACAAGCAACCACGACAACAGCAGCTACGTTAGCACCTTAATCTGAGTCTTCCTCCGCTTTTATCTTTACCTGAGACAACTCATCATTGTTCCACGATAAACTCAGTTACATTCATTCTCAGATGGCAACATTTTGCTTTTTCTAAGGATTTAAATGGAGAGATTTTAAAGCTGTATTGAGGGTTCTTTTGAAAATAATTGGTCCTCtgtagtttgttttatttgagaATTGCTTATAAATATTTGGAATACAACATAAGATTTTGGGAAAAGAATTGTAAACTGAAGATGAACTTCTTCAAGGGAAAACTTGTCTGGAATATTAAAAGAGAAAGTTAACGCAACCCCTGATGAGATTTTAGTGTAGTGCTGTCTGCCTGTCATGTGCACATTACGTAAGTGCAGCCTTCACAAGTTGCATTCGTTTACCAAGTACTTGGTTGCTGAaggctattttatttttaatttttttggttTCCTCGAGAAattctttttatatttcttgCTTGAAAAGTATATTTTGGCTAATGGGTTGTTGGTGTTGGGGGGGTGAAAGGAGCATGCACCATGTAGGCACTTTAATATGaagataaatattttattttcactgtaaTGCAGTTGATACCTGGTAATTagaatgtaaaatatttaaCTTGTTAATCAACCTATCACTGTATACCTGTATGCCTTTGTAATTCCATGTGCAGGAGGCTCCAACACCCTGCTAATTCTGTAGTCTGTAGATTATAAAGGACTTCTGATTTCATGTTGTAATTCtgtgaatgaaaataaaattattgcaAATTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310777 lncRNA downstream 18687 20382465 ~ 20391508 (-) True G229071
TU310764 lncRNA downstream 52632 20355636 ~ 20357563 (-) True G229062
TU310720 lncRNA downstream 108757 20301102 ~ 20301438 (-) False cdk17
TU310623 lncRNA downstream 528116 19877097 ~ 19882079 (-) True G228947
TU310627 lncRNA downstream 551332 19858103 ~ 19858863 (-) True G228949
TU310783 lncRNA upstream 3659 20434155 ~ 20437536 (-) True G229076
TU310788 lncRNA upstream 11824 20442320 ~ 20450128 (-) False G229079
TU310789 lncRNA upstream 11824 20442320 ~ 20450128 (-) True G229079
TU310808 lncRNA upstream 104789 20535285 ~ 20535597 (-) True G229095
TU310809 lncRNA upstream 106077 20536573 ~ 20536801 (-) True G229096
XM_039791001.1 mRNA downstream 519 20394066 ~ 20409676 (-) False mcm10
XM_039791000.1 mRNA downstream 519 20394066 ~ 20409676 (-) True mcm10
XM_039791217.1 mRNA downstream 55568 20301092 ~ 20354627 (-) True cdk17
XM_039791213.1 mRNA downstream 123608 20272526 ~ 20286587 (-) True hcfc2
XM_039791214.1 mRNA downstream 123609 20272526 ~ 20286586 (-) False hcfc2
XM_039791833.1 mRNA upstream 25179 20455675 ~ 20530744 (-) True camk1da
XM_039791147.1 mRNA upstream 106560 20537056 ~ 20544945 (-) True LOC120553073
XM_039792468.1 mRNA upstream 119538 20550034 ~ 20564985 (-) True cdc123
XM_039792470.1 mRNA upstream 190049 20620545 ~ 20640722 (-) True il15ra
XM_039792475.1 mRNA upstream 190049 20620545 ~ 20638101 (-) False il15ra
TU310704 other downstream 287856 20067036 ~ 20122339 (-) False rerg
TU310602 other downstream 570893 19811245 ~ 19839302 (-) False etv6
TU310603 other downstream 570893 19811245 ~ 19839302 (-) False etv6
TU310604 other downstream 603097 19733102 ~ 19807098 (-) True G228934
unassigned_transcript_1502 other downstream 957167 19452946 ~ 19453028 (-) True trnal-cag_24
TU310933 other upstream 527161 20957657 ~ 20958220 (-) True G229199
XR_005638087.1 other upstream 633195 21063691 ~ 21145533 (-) False ptprz1b
TU311312 other upstream 1340592 21771088 ~ 21811031 (-) False LOC120553090
TU311319 other upstream 1340640 21771136 ~ 21811097 (-) False LOC120553090
TU311637 other upstream 2674264 23104760 ~ 23239573 (-) True G229716

Expression Profile