RNA id: XR_005638177.1


Basic Information

Item Value
RNA id XR_005638177.1
length 5222
RNA type transcript
GC content 0.53
exon number 41
gene id abcc9
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 5281258 ~ 5373637 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGGCAGCAGTAACATGCATAGCAGCTGATGCTGTGCGGGGGCTAAAAATAATCAACTTTTTACTCTCCAACTCTCGCTGTATTgtgcttctttttctcttctttctttcttctgtttgttttctttctttttttaaatcaagacgTCTGGAATGAAACAGCGTCAGTAAGGAATTTTAGTTACTTTTCTTCGAGATCGACTCAAGGCTTGTGTCGAGCAGCTGGGTGGTGGCATGGCCTTGTCGTTTTGCGGCAGCGACAACAGCACCAATTCCTACAGCGTGAACGCGGGCGTGCTGAACAATGGCTGCTTCGTGGACGCCCTCAACTTGGTACCCCATGTCTTCCTGCTCTTCATCACCTTCCCCATCCTCTTTATTGgctGGGGAAGTCAGAGCTCCAAAGTCCAGATCCATCATAACACTTGGCTCCATTTCCCCGGCCACAACATGAGATGGATCCTCACCTTCTCTCTGCTGTTTGTCCATGTCTGCGAGTTCGCCGAGGGCATCGTCTCCAACAAAGGGATGCAGACCAACCACCTCCATCTCTTCATACCAGCCTTCATGGGTTTCATAGCAGCCACGACATCAGTGGTTTACTACCACAACATAGAGACATCCAACTTCCCCAAACTGCTGCTTGTCCTGTTCATCTACTGGGTGTTGGCGTTCATTACCAAGTCCATTAAGCTGTGGAAGTTTGCAGAGTACCATGTTGGACCACAGCACCTGAGGTTCTGCATCACTGCCCTGCTAGTCCTCCTGTACGGACTGCTGATGGCCGTGGAGATCAATGTCATAAGAGTCAGAAAGTACGTGTTCTTTGCCAACCCTCAAAAGGTGAAACCACCGGAGGATTTACAGGATTTGGGGGTTCGCTTTCTGCAGCCGTTTGTCAACCTGCTGTCCAAGGCAACATACTGGTGGATGAATCCTCTCATCATTGGAGCCCATAAGAGGCCCATAGAGCTGAAGAAGATCGGCAAGCTGCCCATCGCCATGAGAGCCCTCACCAACTACCTTCGGCTCAAAGACGCCTACGAGGATCAAAGGACAGCGGAGGATCCGAACCGCGCCCCGTCAATCTGGCGCTCCATGTATCGAGCGTTTGGCCGCCCCATCCTGCTCAGCAGCACCTTGCGCTACCTGGCTGACCTGCTGAGCTTTGCCGGGCCGCTCTGCATCTCTGGCATCGTAAAGTACCTGAACAAGACCACACCGCCAAACAACATCAAGGGTGAGATATATTTAGGCGTGTACTTCATGTCTACCACTGAGCTGCTGCAGAACACCTCAGTCCTGGCTGTGCTTCTCTTCCTGGCTTTGGTCCTGCAGAGGACCTTCTTGCAGGCCTCGTACTACGTCACCATAGAAACGGGCATCAACCTGCGCGGAGCCCTGCTGGCGATGATTTACAACAAAATCCTGCGTCTGTCCACCTCCAACATGTCCATGGGGGAGATGACGCTAGGGCAGATCAACAACCTGGTTGCTATAGAGACCAACCAGCTGATGTggttcctcttcctctgccccAACCTGTGGGCCATGCCTGTACAGATCGTGATGGGAGTGATCCTGCTCTACTATTTGTTGGGCTGCAGTGCCTTGGTTGGAGCATCTGTGATAGTTCTGCTGGCTCCAGTCCAGTACCGAATAGCTACAAAGCtggcagacacacaaaaaagcaCACTAGAACACTCTACGGATCGTCTGAAAAAGACCACAGAGATCCTAAAGGGCATCAAGTTGCTGAAGCTGTATGCCTGGGAGAATATCTTCTGCGACAGCGTGGAGGACACCAGAGGCAAAGAGCTCAAGAGCCTCAAGACCTTCGCCTTCTACACATCAATGTCTATCTTCATGAATGCTGCTATTCCCATTGCTGCCGTTCTTGCGACGTTTGTGGTGCGTCACTTCTTCGCTGAAACCGGTCCCAATCCTTCGGAGGCCTTCGCAGCGCTGGCGTTGTTCCACATCCTGGTCACCCCTCTCTTCCTGCTCTCCACTGTGGTCAGATTTGCTGTCAAGGCGCTGGTCAGTGTCCAGAAGCTCAGCGAGTTTCTTCAGAGTGACGAAATTGGAGACGACAGCTGGAGAAATGGAGACACGTCTGTTTCCATGGAAGCAGGAAAGAAACACCTGGGGGTGACCAAAGCAATCAACAGGAAGCAGCCAATGCGCTACCAGATGGACAACTACGACCAGCCGACCCGGCGACAGATGAGACCCACGGAGACGGAGGATGTGGCTGTAAAGgtGAGCAATGGATTCTTCACCTGGGGAAGTAACCTGTCCACGCTGTCCGACATCAACATCTGCATCCCCACAGGCCAGCTGACAATGATTGTGGGCCAGGTGGGTTGTGGGAAGTCCTCCCTGCTGCTGGCCATGCTTGGCGAGATGCAGACCCTCGGTGGAAGTGTCTACTGGAGCAACAAGAACAGATACTCTGTGGCCTACGCTACCCAGAAGTCCTGGCTGCTCAACGCTACGGTGGAGGAGAACATCACATTTGGCAGCCCGTTCAATAAACAGAGGTACAAGACCGTGATAGACGCCTGCTCTCTGCAGCCAGACATTGACCTGCTGCCATTTGGAGACCAAACTGAGATCGGAGAGAGGGGCATCAACCTGAGTGGAGGTCAGAGACAGAGAATCTGCGTGGCCAGAGCTCTCTACCAGAACACCAACATCGTCTTCCTGGACGATCCCTTCTCAGCGCTGGACATCCACCTCAGTGATCACCTCATGCAGGAAGGAATCCTCAAGTTTCTGCAGGATGACAAACGGACTGTAGTCCTGGTCACCCATAAACTGCAGTACCTCATACATGCAGACTGGATTATAGCAATGAAGGATGGCTCTGTGCTGAGAGAGGGAACTCTGAAGGACATTCAGACTCATGACATCGAGCTTTATGATCACTGGAAGACCCTGATGAACCGACAAGACCACGGCCTGGAGAAGGACGTACAGCAGGACAGCCAAACAACACTCGAGAGGAAAACACTGAGGAGAGCTTTCTACTCCAGAGAGGCCAAGAACCAAATAGACGATGAGGACGAAGaggaagaagaggaggaggaagatgatgaCAACATGTCCACAACCACTAACAGAAGATCTAAGATCCCATGGAGGGTGTGCTGGTGTTACATGTCCTCCGGTGGGTTCTTTATGGCCTTCCTGATGGTGTCCTCCAAACTTCTCAAACACTCTGTCATTGTTGCCATTGACTACTGGTTGGCCATCTGGACTTCCGCCAAAACCAACCAGAGTGTGGGAGCAGGACCAGACATGTTTAATGGATCCAGCCTGGCTGACGGTATCGGCGGCAACTCCACGCTTGGTACTCCGCAGGCTGAGGACGACTCCTACTACCTGCGAGTGTTCATCATCCTGTGTGCGGCTGGAATCACGTTATGCCTCATCACCTCTCTGACTGTGGAGTTTTTGGGTCTTTCTGCAGCCACCAACCTGCACCACAACCTGCTCAACAAGATCATCCACGCGCCcatcagGTTCTTTGACATCACTCCCCTGGGGCAGATCCTCAACAGATTCTCAGCTGATACCAACATCATAGATCAGcaTATCCCTCCAACACTGGAGTCTTTGACGAGATCCACCTTGCTGTGTTTGTCGGCAATCGGGGTCATATCCTCCATCACTCCAGCTTTCCTGATCGCCTTGGTTCCCCTGGCTGTGGCCTTCTACTTCATCCAGAAGTATTTCCGAGTGGCCTCTAAGGACCTCCAGGACCTCGACGACTCCACACAGCTTCCTCTGCTCTGCCACTTCTCTGAGACAGCTGAAGGTCTCACCACTATAAGAGCATTCAGACACGAGGCTCGTTTTAAACAGCGTATGCTGGAGCTGACCGACACCAATAACACGGCCtacctgtttctgtctgctgcCAACCGCTGGCTGGAGGTCCGAACGGACTACCTCGGAGCAGTGATAGTGCTGACAGCAGCAGGAGCCGCCATATGGAGTTTACGCTACGGTCTGCATTCTGGAGGCCTGGTGGGCCTCGGACTCACCTACGCCCTCACTGTCACCAACTACCTGAACTGGGTTGTGCGGAACCTGGCAGACCTGGAAGTCCAGATGGCAGCGGTGAAGAAGGTCAACAGCTTCCTCGGCACAGAGTCAGAGAACTATGAGGGATCCATGGATGCCTCTCAGGTGCCTGAGAACTGGCCCCAGAACGGCGAGATAAAGATCCAGGAGCTGTGCGTGCGCTACGATCCCATGCTCAAACCAGTGCTCAAACACGTCAACATGTTCATCGAACCAGGCCAGAAGGTGGGAATCTGCGGTCGCACTGGCAGCGGGAAGTCTTCTCTGTCCTTGGCCTTTTTCAACATGGTGGATATTTTCGAAGGGAAGATCGTCATCGATGGGATCGACATCTGTAAGCTTCCTCTGCAGACACTCAGGTCTCGGCTCTCCATCATCCTCCAGGATCCCGTGTTGTTTAGTGGatcaataagGTTTAACCTGGATCCAGAGAGGACGTGCACTGATGACAGACTCTGGGAGGCGCTAGAGATCGCTCAGTTGAAGAACATGGTGAAAGCGCTGCCCGGAGGACTAGATGCGGTTGTGACTGAAGGCGGAGAGAACTTCAGCGTCGGTCAGAGGCAGCTCTTCTGTCTGGCCCGGGCTTTTGTCAGAAAGAGCAGCATCCTCATCATGGACGAAGCCACAGCATCGATAGACATGGCCacgGAGAACATCTTACAGAAAGTTGTGATGACTGCATTTGCAGACCGAACAGTCGTTACAATCGCACACCGCGTGTCCTCCATCTTGGACGCCGAGCAGGTGTTGGTCTTCTCCTCGGGGATATTGGTGGAAAGTGACTCGGGTCCCAACCTGCTAGCGCAGGACGATAGCCTCTTCAGTGTGCTAGTGAGGACTCACAAGTAGACCCGGGTCAGCACAGACCACTTTGGCTCTGCCTggttcttctctctttcttccatttttttccccacctctTCCTGAATTGTCCTCCTTTTCCTGGCTGAGTCAGAGCTGGAGTCTGGGTCTGCTGAAGCCTTTCTGCCACTGACAGCCTGCACCGCGTCCACACCATCCTAACAGCCGATCTGGTCATCGTGATGAAGCGAGGGAACATTTTGGAGTACGACAAACCCGAGACTCTTTTGGAGCAGGAGGACGGGATGTTCGCTTCCTTCGTCAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306499 lncRNA upstream 79600 5186966 ~ 5204159 (+) True G225983
TU306502 lncRNA upstream 97276 5185667 ~ 5186483 (+) True G225986
TU306501 lncRNA upstream 98193 5183913 ~ 5185566 (+) True G225985
TU306484 lncRNA upstream 119986 5079479 ~ 5163773 (+) True G225973
TU306466 lncRNA upstream 414952 4863858 ~ 4868807 (+) True G225955
TU306525 lncRNA downstream 1081 5374284 ~ 5412002 (+) True LOC120553187
XR_005638126.1 lncRNA downstream 32727 5405930 ~ 5412002 (+) False LOC120553187
TU306550 lncRNA downstream 171643 5544846 ~ 5548542 (+) False G226027
TU306552 lncRNA downstream 171643 5544846 ~ 5548542 (+) False G226027
TU306554 lncRNA downstream 171643 5544846 ~ 5552199 (+) True G226027
XM_039791066.1 mRNA upstream 45415 5235150 ~ 5238344 (+) True LOC120553019
XM_039791065.1 mRNA upstream 45415 5236598 ~ 5238344 (+) False LOC120553019
XM_039791119.1 mRNA upstream 479517 4793287 ~ 4804242 (+) True LOC120553055
XM_039792032.1 mRNA upstream 534517 4734262 ~ 4749242 (+) True dmtf1
XM_039791702.1 mRNA upstream 587576 4688927 ~ 4696183 (+) True LOC120553359
XM_039791339.1 mRNA downstream 9830 5383033 ~ 5392940 (+) False kcnj8
XM_039791338.1 mRNA downstream 9831 5383034 ~ 5392940 (+) True kcnj8
XM_039791340.1 mRNA downstream 20437 5393640 ~ 5399303 (+) True echdc3
XM_039792084.1 mRNA downstream 1140642 6513845 ~ 6519452 (+) True kin
XM_039791177.1 mRNA downstream 1161972 6535175 ~ 6553086 (+) True itih5
TU306390 other upstream 625790 4657444 ~ 4657969 (+) True G225894
unassigned_transcript_1479 other upstream 1086944 4196705 ~ 4196815 (+) True trnal-caa_19
unassigned_transcript_1478 other upstream 1089847 4193802 ~ 4193912 (+) True trnal-caa_18
unassigned_transcript_1477 other upstream 1092973 4190676 ~ 4190786 (+) True trnal-caa_17
unassigned_transcript_1476 other upstream 1093420 4190229 ~ 4190339 (+) True trnal-caa_16
unassigned_transcript_1480 other downstream 1774066 7147269 ~ 7147340 (+) True trnaw-cca_35
TU307013 other downstream 1945337 7318540 ~ 7321049 (+) False snrpf
XR_005638075.1 other downstream 1949867 7323070 ~ 7332259 (+) True amdhd1
TU307011 other downstream 2023291 7396494 ~ 7400399 (+) False nrip2
TU307294 other downstream 3053488 8426691 ~ 8432697 (+) True rps16

Expression Profile