RNA id: XM_039792025.1


Basic Information

Item Value
RNA id XM_039792025.1
length 2089
RNA type mRNA
GC content 0.58
exon number 11
gene id net1
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 24066409 ~ 24109573 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCTGTTGTAGTAGATAAAAATTAGATGTATCGTTATTATTCCGTTTATCCCATTCAGTAGCACATAGTTAAAATACCCCTGGTATATGACATTTCAAATGGGTGAAACCGGTGAAGTCCCAGCTCCCGTTTCGACTTCAGAGAAACCAAAAAGACAAGCGAGCTCCAGTAACTTGCAGAGGAAGTTTTCAGCGGATGAAGGACAGTCTACCCCGgagaacaacaacagcaggacTCTGAGACGGTCACTGCGAAGAGGAAGCTCCTTCAGCTTCATCACCCCCGGGCCACAATGGGACTTCAGTCTGAAACGGAAACGCAGAGAGAAGGATGACAGCGACGCAGTCAGCCTCTGCAGCTTCGACTTTAAGGAACCCAGCACAAAGCGGGTCCGTCCTCTCGGCAGGGTGACGTCGCTAGCCAACCTCATCTCTCCGGTGAAGAATGGGGCCGTCCGGCGCTTCGGCCAAACCATCCAGGCCTCTTTCCGGGGCGATGGCAAGTCGCCGGGCGCGCCCCATAAGCCTTGCAGCAAGGCGGCGGCCCCCACACCGCCCAAAAGGAGGAACAGCATGCTGTGGTCAGAGACGCTAGACGTCCACCAGAAGGGAACTTTCTCTACCAAAGAAATCAAGCGGCAGGAGGCCATATTTGAGCTGTATCGTGGAGAACAGGACCTGATTGAGGACCTCCAGCTCGCACGCAAGGCGTACCACGACCCGATGCTGAAGCTCTCCATTATGTCAGAGGAGGAGCTCACGCACATCTTCGGCAACCTGGACGCCTACATCCCTCTGCACGAGGACCTCCTGGCGCAGCTCACCAAAGCCACGGCGCCAGACGGGACTGTGGGCCGGATCGGACAGATTGTCGTAGACTGGCTGCCAAGGCTCAACGCCTACAAGAACTACTGCAGCAACCAGCTGGCAGCCAAGGCGCTGCTGGACCAGAAGAAGCAGGACCCGCGCGTGCAGGACTTCCTGCAGCGCTGCCTCGAGTCGCCCTTCAGCAGGAAGCTGGACCTGTGGAGCTTCCTGGACATCCCGCGCTCGCGCCTGGTCAAGTACCCGCTCCTGCTCAAAGAGATCCTGAGACACACCGCGGCAGAGCACCCGGACGCCGCCAGCCTGGAGGAAGCGatcaCCATCATGCAGGGCGTGCTGTCTGACATCAACATGAAGAAGGGAGAGTCCGAGTGCCAGTACTACATCGACAAGTTGGAGTATCTGGACGACAAGCAGAGAGACCCTCTGATCGAGCAGTGCAAGAGCCTGCTGTGTCATGGCGAGCTGCGGAACAAGAGCGGCACGAAGCTGCATGTGTTCCTGTTCACCGAGCTGCTGGTCCTGACCCGCCCCGTCACCAGGAACGAGCGCCAGTGTTTCCAGGTGTACCGGCAGCCAATCCCAGTGCACGATCTCCTGTTGGACGACCTGCAGGATGGAGACGTCAGAATGGGCGGATCCTTCAGAGGTGCTTTCAGCAACGCAGACAAAGCCAAGAACATTTTCCGCGTGCGTTCCCAAGACCCGAGCCAGGCGCAGTCCCACACCCTGCAGGTCAACGACGTCTTCCACAAGCAGCAGTGGCTGAACTGCCTCCGCAGCGCCATCTCCGTCCACCGGCCGCTCGGCGAGCCCTCGGCGCCGGCCCCCCCGCCGGCGAGCGACGCCCGCTCCAAGCGCCGCCCGTCCTCCATCTCCGCCATCGTCCACATGGAGGAGGCGGATGAGAACTGCCTGCGGCCGACCTCTCAGTCCGCCCCCAGCACGCCGTGCAACAGCGCGGCGCCCAGCCCCACCACAAAGTCCTCCCTATCCCGCTCCTCCTCGTCAGCTTCGTCGTCGTCCTCTTCGACGTCGCCGCTCTCCTCGCTCACATCGCACAAAACCAAAAAGGACAAGAAGTCTCTGTGCTCTTTAGGGAAGAGAAAAGAGACTATGGTGTGAAGTGAGGTGAAAAGGAGAAAAATGGACTCCTGGgtggacatttttgtaaaaaggaaacacaacgTGGAGAAGCGTGGTacttgtatttatgtgtgtctgcgtgcgtgcgtattATTAAAACAGTGTTCTGTGTTACTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311929 lncRNA downstream 117629 23946497 ~ 23948780 (-) True G229952
TU311901 lncRNA downstream 206651 23859060 ~ 23859758 (-) False LOC120553046
TU311856 lncRNA downstream 352732 23713456 ~ 23713677 (-) True G229909
XR_005638124.1 lncRNA downstream 354605 23690519 ~ 23711804 (-) False LOC120553170
XR_005638165.1 lncRNA upstream 8160 24117732 ~ 24202125 (-) True LOC120553435
TU312050 lncRNA upstream 94458 24204030 ~ 24225411 (-) True G230067
TU312090 lncRNA upstream 205511 24315083 ~ 24315857 (-) True G230089
TU312120 lncRNA upstream 369522 24479094 ~ 24479656 (-) True G230118
TU312121 lncRNA upstream 370135 24479707 ~ 24481679 (-) True G230119
XM_039791068.1 mRNA downstream 180817 23868156 ~ 23885592 (-) True glt8d2
XM_039791102.1 mRNA downstream 202435 23858219 ~ 23863974 (-) True LOC120553046
XM_039791559.1 mRNA downstream 257063 23718339 ~ 23809346 (-) True sbf1
XM_039791277.1 mRNA downstream 382341 23677168 ~ 23684068 (-) True cbll1
XM_039791667.1 mRNA upstream 147211 24256783 ~ 24284709 (-) True podxl
XM_039791878.1 mRNA upstream 255766 24365338 ~ 24375224 (-) False LOC120553465
XM_039791877.1 mRNA upstream 255766 24365338 ~ 24375224 (-) False LOC120553465
XM_039791875.1 mRNA upstream 255766 24365338 ~ 24375224 (-) False LOC120553465
XM_039791876.1 mRNA upstream 255766 24365338 ~ 24375055 (-) True LOC120553465
TU311926 other downstream 151717 23908556 ~ 23914692 (-) True G229950
TU311924 other downstream 151717 23912101 ~ 23914692 (-) False G229950
TU311825 other downstream 354614 23692021 ~ 23711795 (-) True LOC120553170
TU311851 other downstream 366211 23699697 ~ 23700198 (-) True G229907
TU311637 other downstream 826836 23104760 ~ 23239573 (-) True G229716
unassigned_transcript_1528 other upstream 467378 24576950 ~ 24577021 (-) True trnap-agg_20
XR_005638196.1 other upstream 1082211 25191783 ~ 25217693 (-) False sult4a1
TU312561 other upstream 1486008 25595580 ~ 25601366 (-) False LOC120553115
TU312668 other upstream 2070979 26180551 ~ 26196487 (-) False mkrn1
TU312734 other upstream 2266120 26375692 ~ 26381365 (-) True G230594

Expression Profile