RNA id: XM_039792036.1


Basic Information

Item Value
RNA id XM_039792036.1
length 1140
RNA type mRNA
GC content 0.47
exon number 8
gene id LOC120553521
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 27224262 ~ 27231391 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

taaatgcaaaaatgttatttggcaagtcaCCGTGGTATAAGCAGCAttggacggttcacgcctcttCCATCCTCCATTAATTCCTGAAAATGGACACCTCCTCGAGAATTAACCCTTACTTATTTACTGTTAACAGTGCATATACAAGCAGCTGGATTAATGACTGCTTTTTCTAGTTTTATCAGTCTTTTTAATGCCCTGCACAGATCGAGAGGCGTCAGCAACCGGTGGAGGGAGGTGTTGATGAAGACCCATCAACCTGCCCCTGCCTGATGAGCTGCACCATCTTCCTCGGTTACACCTCAAACCTCATCAGCAGCGGACTCAGGGAGACTATCCGCTACCTCGCAGAACACAAAATGGTGGGTGTCTTAGTGACCACAGCTGGAGGTATAGAAGAGGATCTGATGAAGTGTTTCAGCCCGGCTTACATTGGAGACTTTACTATGTCTGGCAAGGATCTGTACGAAAAAGGTCATAACATGGCTGGAAACACTCTGATCCCCCAAGAAAACTATGTCAAGTTTAACAAATGGATGCCTCCGATCTTGAAGCAGATGCTGCTGAAGCAGAACACTCTGGGCGTTTGCTGGACTCCATCTAAGATGATCCATCGGCTGGGCAAGGAGATCAACAACCCTGAATCTGTTTACTACTGGGCCTACAAGAATAACATGCCGGTGTTCTGCCCTGCCCTGACAGACGGCGCTATAGGAGAcgagctctttgtcttctcaGCTGAAAACCCGGGCTTAAAACTGGACATAGTTGAAGATATTTCAAAGTTGAACAGCCTCGCAATTGCTGCCAACAGCACAGGGATGATCATCCTGGGAGGAGGTGTAGCCAAACACCAAGTATGCAATGCCAATTTCTGGAGGAATGGAGCCGACTACGCAGTGTATGTGAACACGGCTCAGGAGTTTGATGGTTCTGACTCAGGGGGCAGTCCTGATGAGGCCATGTCCTGGGGAAAGATCAAAGTAGATGCTAAACCTGTGAAGGTGTGTGCAGATGCTTCCATCGTTTTCCCCCTATTGGTGGCAGAGACCTTTGCAGTCCATGCTAATAAGAAGACAGCTGGCAAGGAAAACAGATAAACAAATTGTTGGTCTGGAATACAAAGCTTCAGATGGAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312841 lncRNA upstream 107368 27115926 ~ 27116894 (+) True G230685
TU312799 lncRNA upstream 252409 26963162 ~ 26971853 (+) False LOC120553759
TU312811 lncRNA upstream 343275 26880507 ~ 26880987 (+) True G230658
TU312795 lncRNA upstream 543164 26680864 ~ 26681098 (+) True G230645
TU312785 lncRNA upstream 610090 26613952 ~ 26614172 (+) True G230635
TU312905 lncRNA downstream 1003 27232394 ~ 27233038 (+) True G230746
TU312936 lncRNA downstream 51108 27282499 ~ 27282919 (+) True G230773
TU312937 lncRNA downstream 51562 27282953 ~ 27283275 (+) True G230774
TU312947 lncRNA downstream 239697 27471088 ~ 27472678 (+) True G230783
TU312950 lncRNA downstream 253326 27484717 ~ 27484946 (+) True G230786
XM_039791351.1 mRNA upstream 77471 27138046 ~ 27146791 (+) True gpr22a
XM_039791354.1 mRNA upstream 152278 27069077 ~ 27071984 (+) False LOC120553194
XM_039791352.1 mRNA upstream 152278 27069077 ~ 27071984 (+) True LOC120553194
XM_039791355.1 mRNA upstream 172980 27046066 ~ 27051282 (+) True ndufa5
XM_039792298.1 mRNA upstream 179845 27019362 ~ 27044417 (+) True aebp2
XM_039792459.1 mRNA downstream 22025 27253416 ~ 27272215 (+) True LOC120553763
XM_039791029.1 mRNA downstream 405697 27637088 ~ 27644879 (+) False golt1ba
XM_039791030.1 mRNA downstream 405748 27637139 ~ 27644879 (+) False golt1ba
XM_039791028.1 mRNA downstream 405785 27637176 ~ 27644879 (+) True golt1ba
XM_039791031.1 mRNA downstream 405785 27637176 ~ 27642836 (+) False golt1ba
XR_005638128.1 other upstream 151710 27069077 ~ 27072552 (+) False LOC120553194
TU312731 other upstream 843153 26372736 ~ 26381109 (+) True mrps33
TU312732 other upstream 843153 26372736 ~ 26381109 (+) False mrps33
TU312620 other upstream 1177581 26038287 ~ 26046681 (+) False arhgef39
TU312157 other upstream 2446004 24620812 ~ 24778258 (+) True G230148
TU313012 other downstream 371614 27603005 ~ 27603702 (+) True G230842
TU313087 other downstream 709930 27941321 ~ 27947473 (+) True G230904
TU313169 other downstream 826340 28057731 ~ 28058218 (+) True G230975
unassigned_transcript_1530 other downstream 1239415 28470806 ~ 28470878 (+) True trnat-ugu_41
unassigned_transcript_1531 other downstream 1239715 28471106 ~ 28471178 (+) True trnak-uuu_24

Expression Profile