RNA id: XM_039792050.1


Basic Information

Item Value
RNA id XM_039792050.1
length 1232
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC120553526
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 25392432 ~ 25400207 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCAGTTCCCCCCCTGGAGATGCGTCGCTTGGAGAACTATTAGCGGACAGCGCTGCACATCGAAGCCGGGATGAGTGGGAGCTCCGCGGTGTCCGGCGCGGCGCCCTGCCTGTTTGTGGGGTAGACACGGAAACTGGACTGGAACCGGACGAACTAGCAGAATATCCACGAATAATGATGGACGTTGCTGCCACTTGCACAAAGAGTGAAGATGAGAGTCCAGTAGTTCTCACAGCGGTGCCTGAAATGATCTGGGATGACCTGACTGAGAAGCAGCCGAGTTCACCTGATGTCTCGGAGGATCTTCAAACAAAGTCTAGTTCAGTGGCATCGGAAAACAAGATGcaaatacaaaagaaaagaaaaaaattgaagCTCACCAACAGTGTTACCTGGAAGGAAGTAAATCCACATTCCAAGGTAAATTCAGCAGTTGAGAGTATTCAGATTAATAACATAGTATCACTTTTTACAAACCAAATGGGGGATGCAGGTGAAAATGGTCCATTATACCCTAAATGTGACAGTGGTCCTTTCTCTGAAGATgagactgatgatgatgatgatgatgactggTTATTCATACCTATAAGCATATCAGACCTCAAATTTGAATCAGATAATGAAGACCAGGATAGCCCAGACATACATGTGCTAGATGATGGGGAAACAGGAGACCAAGAAAGACAATGTGACACAAGCCCAACACACTGGCCATCTCCGAATCCAGTACCAGCGTCTCATCCTCCCCAGATCGAGACATTTGACACTTTGGCCAGCTTTATGAAACAAGCATTAGGCAGGAGCACACCGAACATGGACTGGACTCTGAGGGAAAACCACAACCAACTAAGAACAGGAGAGAGTCTGTAGACAGCTGTGCAACTGAAGACAGTTGTGATTACTCCTCTGCATTAGGACACAACTATTTGACAGCGTCCAGGTTGAGGTCAGCACCTCTGCTCATAGAGACAGATTCTGAGGGTGAAGGCAATGATGTTACAAATATGCCAACAAGTCCAAACAAGAGCTTGGACAAGTCGGGCATGAAAAGCCTTAGAAAGACCAATGGACAAAACATTCCAAGAAAGGATGACATTATAATCCTTGATTCGGAGGATGAAAGTGACCAAAACTGCAAAAAGAAGGCTGAAACCGAAGGAAGGCCTGAAACTATGGACAGAAAGCGTGGAACTGTTaaagaaaagtttaaaaaaaaacgaccGCTACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312316 lncRNA upstream 14831 25376347 ~ 25377601 (+) True G230259
TU312312 lncRNA upstream 19008 25362899 ~ 25373424 (+) False LOC120553523
TU312317 lncRNA upstream 40258 25351877 ~ 25352174 (+) True G230260
TU312293 lncRNA upstream 200489 25184812 ~ 25191943 (+) True G230249
TU312222 lncRNA upstream 593691 24795953 ~ 24798741 (+) True G230192
TU312409 lncRNA downstream 35944 25436151 ~ 25494197 (+) False G230327
TU312407 lncRNA downstream 75592 25475799 ~ 25494197 (+) False G230327
TU312410 lncRNA downstream 91576 25491783 ~ 25494355 (+) True G230327
TU312420 lncRNA downstream 94941 25495148 ~ 25495399 (+) True G230336
TU312421 lncRNA downstream 99640 25499847 ~ 25500209 (+) True G230337
XM_039792038.1 mRNA upstream 18436 25362882 ~ 25373996 (+) True LOC120553523
XM_039792040.1 mRNA upstream 18436 25369256 ~ 25373996 (+) False LOC120553523
XM_039792039.1 mRNA upstream 19575 25362882 ~ 25372857 (+) False LOC120553523
XM_039791863.1 mRNA upstream 43091 25263996 ~ 25349341 (+) False ttll12
XM_039791862.1 mRNA upstream 44879 25263996 ~ 25347553 (+) True ttll12
XM_039792044.1 mRNA downstream 2148 25402355 ~ 25491732 (+) False LOC120553524
XM_039792041.1 mRNA downstream 2149 25402356 ~ 25491732 (+) True LOC120553524
XM_039792042.1 mRNA downstream 2149 25402356 ~ 25491732 (+) False LOC120553524
XM_039792043.1 mRNA downstream 2152 25402359 ~ 25491731 (+) False LOC120553524
XM_039792045.1 mRNA downstream 2202 25402409 ~ 25491731 (+) False LOC120553524
TU312157 other upstream 614174 24620812 ~ 24778258 (+) True G230148
TU312075 other upstream 1079494 24309936 ~ 24312938 (+) False LOC120553083
unassigned_transcript_1527 other upstream 1505008 23887337 ~ 23887424 (+) True trnay-gua_62
TU311875 other upstream 1543808 23833031 ~ 23848624 (+) False adm2a
TU312620 other downstream 638080 26038287 ~ 26046681 (+) False arhgef39
TU312731 other downstream 972529 26372736 ~ 26381109 (+) True mrps33
TU312732 other downstream 972529 26372736 ~ 26381109 (+) False mrps33
XR_005638128.1 other downstream 1668870 27069077 ~ 27072552 (+) False LOC120553194
TU313012 other downstream 2202798 27603005 ~ 27603702 (+) True G230842

Expression Profile