RNA id: XM_039792053.1


Basic Information

Item Value
RNA id XM_039792053.1
length 2170
RNA type mRNA
GC content 0.51
exon number 19
gene id slc5a8
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 19355872 ~ 19362110 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGCTGGGGCTTGACTTGTTCAGAGATTTTGACTGGACAATCTATACTGACCCCAACTCACGTCGTGACCCCAACAGGCGTCGTGGCCCCATCTGCAGCTTCTTCTacaatacagtatgtgcagACATAGAAGGGTTGGTGTATgtttCGGTCTGTGGTCCTGCTCTCAGCTCAGTGTTGAGTGAGACGGTGATGTCTCAGGACTTCCATTCATCCATAGATGATATGGTTTTCCACTTCGAGTGCAAAACACGTGGAGCAGTTTGAACAACTTTCTGAAAAGTTTTACTAGTTTGGGTCTGACTTCCACCAAAATGTCAGGGCACTCCCTGGTCGCTGGCTCCTTCGTGGTAGCAGACTATGTGGTGTTTGCTGTCATGCTTCTGGTGTCGGCTGCCGTCGGGGTCTACTACGCCTGGGTGGACAGGGGCCAGCGAAGCTGGGACTTCCTAACGGGGGGTCGAAGACTGACTGCCCTGCCTGTCTCCCTGTCCCTGACCGCCAGCTTCATGTCAGCCATCACAGTGCTGTCCAACCCAGCCGAGGTATACCGCTACGGAGCCAATATAGGATTTTATGGTCTGGCCTATGTCATGACGATGGTGGTCACATCTGAGATCTTTCTCCCAGTCTTTTACAGGCTGGCCATCACCAGCACGTATGAGTATTTGGAGCTGCGTTTCAGCAGAGCGACCCGTCTGCTGGGAACTGTGCTCTTCATTGTTCAGACAATCCTCTACACTGGAATCGTCATTTATGCCCCAGCTCTTGCTTTAAACCAAGTCACTGGGATGGATCTGTGGGGTGCAGTTATTTCCACAGGCGTGGTCTGTACCTTTTACTGCACAATGGGCGGTCTGAAGGCGGTGGTGTGGACAGATGTGTTTCAGCTTGGCGTCATGCTTGCAGGCTTCCTGTCTGTCATCATCAGGTCCGTGGTCGTTCAAGGTGGAGTCCTCCCCATCATTTCGGATTCAAAACAGGGAGGGAGACTCAACTTTTGGGACTTTGACACAAACCCTCTGAGAAGACACACTTTTTGGACCATAACCATTGGAGGGACATTTGTCTGGGTCAGTATCTATGGGATCAACCAGGCCCAGGTTCAGAGATACATCTCCTGCAAGAGCATCACTCATGCCAGACTATCTCTGTACATCAATCTGCTCGGCTTGTGGTCCATCTTGCTTTGCTCAGTGTTTGCGGGAATGGGCCTCTTCTCAGTCTATAAGAACTGCGACCCATGGACAGCTGGGTGGGTTACTGCTCCTGACCAGTTGATGCCCTATTTGGTGATGGACATCCTGGGAGACTATCCTGGACTTCCTGGACtgtttgttgctgctgcatATAGTGGATCTCTCAGCACAGTGTCATCCAGCATCAACGCACTGTCTGCAGTGACAGTGGAGGACCTGATCAAACCTTACACTAACATATCTGAGAAACATATGTCCTGGATCGCAAAAGGACTGAGTCTCATATATGGGGTTTTATGCATTGGAATGGCTGGACTGGCTTCACTCATGGGAGGCATCTTGCAGGCAGTCATCAGTATATTTGGCATCATTGGAGGTCCTTTACTTGGTGTGTTTACGTTGGGTATCCTCTGTCCATTTGCCAACTCCAAAGGAGCATTGTCAGGTCTCGTGTCGGGGTTGGTAGTGGCTCTGTGGGTGGGCATCGGAGCCCAGATataccccccaccccctgagATGAGCCGACCTCTGTCACTGACCACTGAGGGCTGTAACTTCACTACAACAGACAGCCTCAACTGGACCTCCACTGCTCTACCAACACAGCCAGCCTCCATCAGCACAGCCCCGGTACACATCATTGATGGCAAGCCTCTGCTGGCAGATAACTGGTACTCTCTGTCCTACCTTTACTTCAGTCCTATTGGAACCATCATAGCTATCAGCGTGGGCCTGTTAGTCAGCCTGTTTACAGGAGGCTGGAAGCTGAAGGTGGAATCAAAGCTTACATTAATGAAAGAAGACACAACACTTTATCACCTGTTCCAGTTGTGTAAAGACAGAgtCTTGAGACGAACAGGAAAGCTTGACCTGACaagagacagaggggagagaACTGGCAGCACTAATCCTGCTTTCTGTGACGTAGAGCTGAACTCAACAAAAAACAGCATTACCTCATGAAATGCAAC

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K14388 SLC5A8_12, SMCT; solute carrier family 5 (sodium-coupled monocarboxylate transporter), member 8/12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310457 lncRNA downstream 19844 19332641 ~ 19336028 (-) True G228826
TU310454 lncRNA downstream 27529 19326621 ~ 19328343 (-) True G228824
TU310342 lncRNA downstream 85536 19162017 ~ 19270336 (-) False sox5
TU310370 lncRNA downstream 333630 19014655 ~ 19022242 (-) True G228759
TU310334 lncRNA downstream 380052 18893640 ~ 18975820 (-) True G228731
TU310474 lncRNA upstream 1062 19363172 ~ 19363381 (-) True G228834
TU310475 lncRNA upstream 2046 19364156 ~ 19364416 (-) True G228835
TU310476 lncRNA upstream 3014 19365124 ~ 19365528 (-) True G228836
TU310478 lncRNA upstream 12094 19374204 ~ 19375361 (-) True G228838
TU310479 lncRNA upstream 13349 19375459 ~ 19375795 (-) True G228839
XM_039791263.1 mRNA downstream 2381 19346382 ~ 19353491 (-) False dnai7
XM_039791261.1 mRNA downstream 2382 19346318 ~ 19353490 (-) True dnai7
XM_039791262.1 mRNA downstream 2382 19346382 ~ 19353490 (-) False dnai7
XM_039791266.1 mRNA downstream 2382 19346382 ~ 19353490 (-) False dnai7
XM_039791265.1 mRNA downstream 2383 19346382 ~ 19353489 (-) False dnai7
XM_039791046.1 mRNA upstream 34746 19396856 ~ 19407358 (-) True arl1
XM_039791045.1 mRNA upstream 56131 19418241 ~ 19428429 (-) False LOC120553005
XM_039791044.1 mRNA upstream 56131 19418241 ~ 19428429 (-) True LOC120553005
XM_039791749.1 mRNA upstream 133309 19495419 ~ 19504306 (-) False rpap3
XM_039791750.1 mRNA upstream 133309 19495419 ~ 19503924 (-) True rpap3
XR_005638136.1 other downstream 934465 18369675 ~ 18421407 (-) False gramd4a
TU310229 other downstream 1254877 17830672 ~ 18100995 (-) False tafa5a
TU310227 other downstream 1428167 17830672 ~ 17927705 (-) False tafa5a
TU309971 other downstream 2053674 17295122 ~ 17302198 (-) True G228465
TU309744 other downstream 2532440 16748842 ~ 16823432 (-) True G228291
unassigned_transcript_1496 other upstream 76407 19438517 ~ 19438599 (-) True trnal-cag_18
unassigned_transcript_1497 other upstream 81122 19443232 ~ 19443314 (-) True trnal-cag_19
unassigned_transcript_1498 other upstream 84911 19447021 ~ 19447103 (-) True trnal-cag_20
unassigned_transcript_1499 other upstream 85954 19448064 ~ 19448146 (-) True trnal-cag_21
unassigned_transcript_1500 other upstream 89878 19451988 ~ 19452073 (-) True trnal-cag_22

Expression Profile