RNA id: XM_039792062.1


Basic Information

Item Value
RNA id XM_039792062.1
length 6403
RNA type mRNA
GC content 0.56
exon number 43
gene id LOC120553538
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 4200672 ~ 4448037 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gaggaggaggaagaaaaatcCTCATCCCGATCCTGATTTGTAGCGTCTCGCGCCGTTTGCAGCGGAGCTCCAGAGCTGCTGCAGATCTGCAGATCCGGCTGGATACGGAAAACAGAAAGCAAGACTCCTGCCGgAGCGGAGACGGAGGTGGTTCAACGGGCCTGAACGGAGAACAGgaGAGTTTGGTGGTTGATGTCATCAGTGATCCACAGGCCTGAACGCTGAACAGACGCGATGGAGCGGTGGTGGGCGTGGCAGCGTGCCCTGGTCGTCCTGGCAACCCTTTGCGCATGGACCACGGGAGTGGCTGAGGTGGCGTTCCCGTCCGACACCCTGATCAACAACGTGGTGAGCGACCCGCGCTCGGGCCGGCTGTACGTCGGCGCCGTCAATGCCCTCTACCAGCTGAGCGCCGACCTGAAGCTGGAGTCCCGCAGCGAGACGGGCCCCGTGCGGGACAACCGCCTGTGCACGCCGCCCGTCACCGACGCTTGCGAGGAGGCCGTGGACACGGACAACCACAACAAGCTGCTGCTTGTGCAGGAGGCCAAGGACGTGCTGGTGGTGTGCAGCAGCGTGTTCCGCGGCATCTGCTCGCTGCGGAACCTGAGCAGCGTGGAGCAGCTGCTCTACTTCAGCGACACCAAGGGGGAGAAGTCGTACGTGGCGAGCGTCGAGCAGAGCGTCTCCGTGGTGGGGGTGATGTCATACTTCACcaaggacagagacaacttcacTGTCTTCCTGGTCGGTAAGGGATACGGCAGCCACGACAGCACCAAGCTGATCTCCACCCGCATCCTCCAGGACTACGGCGATTGGGTGGTTTTCGACAGCATCATCGAGGCCTCGGCGGTGCAGGCCAACCCCTTCGTCCTGCGCTACCTCCACGACTTCCGCTTCGCCTTCAAGGACGGCGGCTTTGTGTACTTCCTGTTCTCGCGCACGCTGGGCGTCCAGGACACCAAGAACTTCACCTTCATCTCCAGGATGTGCGAGGACGACCAGGGTTACTACTCCTACACCGAGTTGCAGCTCAACTGCAGCGTCGTCAACAAGTACAACAAAGTGCAGGCTGCCTATGTAGCAACACCAGGGGAAGTTTTGGCTCAGAATATAACCCAATCAGGCGAGCACGGACCAGTTTCAGCCTCTGACAAGGTGCTGTTTGTCGCCTTCACTTCTGATGAAGACCCATTTACTTCAGCCTTGTGCATGTACCCTCTTCACTCCATTAATAGGAGGCTGGTGGAGATAATAGGAGCCTGTTACAGCAACGACGGCATCATTAACGGGAAGGCCGCCGTCTACTCGCCTTACTCCTCCAAGTCTGAACAGCTGTGCAGCAGCACCAATCAGAAGGACATGGCCCTCAGATACAAGTGTGGAGCCGAGTTCCTGCCCTCCCCATTGGCCAGCAAGGCCGAGTTGGCCTTAACGTCTGAGCCCTTATTCCATCGTAAGTGTCACATAACGGCCGTGGCTGTGGCTGTGGAAATGGAGCACGCTGTGGCGTTCCTGGGCACCGCCACCGGAGAGGTGCTGAAGGTGCATCTGTCGGCCCACCCGGACGTGTACGGGCGGGAGCCGGCCGAAGTCACGGGAGACAAGGTCAACAAGAACCTGCTGTTCGATCCCAGGCTCCAACACCTGTACATCACCACCGAGAAAAAGATCACCAAGGTTCCAGTCCAGGCCTGCCACCTGAAGACAGACTGCCACTCCTGCGTCTCCATGAAGGATCCGTACTGTGGCTGGTGTGTCCTGGAGGGAAAGTGCACCAGGAAGAAGGAGTGCAGCAGGTGGACGGAGGAGAACACCTGGCTGTGGTCGCCCGGTCAGAAGTGTGTCCAGATCGAGGCCTTCGACCCCCCCAACATCAGCTGCAAGAAGACCCGgcagGTTGACATAAAGATTCCCTCCCTGCCCATCCTGAGGAGTTCTGATCAGCTGCAGTGTGTGTTCGGCACTTTCACAAGCAAAGCCGTGGCGGTCATCGTCGACAGCCAGATGCAGGTCACCTGTTCGCTGCCAGAGCCCGTGGGAATCCCACCCACTCCCCAGCAGCAGGACTACGTGTCGGTCCCAGTCAAAGTTCTGGTGAACGACAACATCGAGGTGACGTCTGGAGAGTATGAGTTCTACAACTGTGCTGCCACAGTCAGGAAGAACCCAAACACACCgtgtATAGCTTGTGTGAACAGTACATGGGGCTGTCAGTGGAACGCTGAGCATCACATCTGCAGTGACGACAATGATATTGTAGCTGGGGAACACATTGTTAAACCGAAACagAGTGACAGCTGTCCTCAGTTTGAGTCTCCAGAGCCGCAGTTGATCCCCGTGGGCTTTCCGATCCCCATCAGCTTCCAGGGGAGGAACCTGGGCCACATGgGACAGAGCTTTTCCATCGGGACCGAGCTGATGAAGGACACGGAGGCGCCGGTCACCAAGGAGGAGGGGTCAAAGTTCAAATTCCCCGGTTACGAGttTGCCTATGACAAGCAGCAGGAGGTGAGCGTATCGTTCCATATTAAAGACAAAGTCACtgagaggaagattgacagcacCCTGACAGTCGTGCTGTATAACTGCTCCGTGGGACGGGAGGACTGCAGTCTGTGTAAACACGCAGAAGCCAAGTACCAGTGTGCCTGGTGTGCAGCCACACACACCTGCGTTTACCGGGATCTCTGCCCATCATCACAGCCACAACCACAGTGCCCCAACCCGGAGATCACAGACATCATCCCTCGCTTCGGCCCTCTGAACGGTCGGATCTCCGTGACCATCAAAGGCTCCAACATGGGAATAAAGAAGGAAGACATCAAGAGGATCACAGTGGCCGGGGTGAACTGTGTTCACCAGGAGGACAGATACTCCGTCTCTACCAGTGTGGTGTGTGAGATCGGCCCAGCGAAGAGAATTCCACCGTCCGACATCCCTCCCGAAAGCTCCTACAGAGGAGCAGTGGAGATAGAAGTAGAGGGAGGAAGAACAGGGAGGTCTAAGGTCGAATTCACCTATCGGGACCCCAAACCCGTCTCTGTCCACCCAGCGAAGGGTCCAGCAGCCGGGGGAACCCTGATCACCATCGAGGGAGAAGACCTGAACACGGCGACCAAAGAGGACGTGTCCGTCAGTGTCGGGGGGGTTCCCTGTGAAGTccTGAAGTTTGACTCCGAGATCACCTGTAAGACCGGGAAGTACCGCACGCCCTCTGACCCGTTAACGGTGACGGTGAAATACGGTAAAAACACCACCAAAGACATCCCAGCAGCGTTCCAGTACTCTGAAAACCCCAAGATCACAGATTATACCCCCAAGGGCAGCTTCTTTTGcgGTGGTCGAAAGATCGTGGTGATGGGAAGCGGTTTTGATCTGATCCAGAGAGCCACGATGAAAGTCATCCCCTCCCCCAACGAGTTTTCACAGAACACCACACCTGtggagTTTGTGGAGGAGGCTCTGAGGAAGTACGACACCGTCATGGAGTTCTACTCGCCGTCGGTGAACTGCTGCGTGGACGGCCAGTCCCTCCGGACGCTCATCCAGCTGGACGACGTGAAGGAGGACCTGAAGAGCTTCGACTACCACCCCAACCCTTCCTTCAACGAGCTGGGCAAGAACATCATCACCGAGACCAGCATCATCATCGTCACTGGTCGAGGTTTCTCCAAGGCGATGACAGCCAAAGAGGCCCAGGCGTTTGTTGGAGACGCCTCCTGTCATGTTAACATCCTGCAGGATGATAAGTTGATCCTGGAGGCTCCTTCCACGCAGCCTAGATCCAGATCCAAACGCCAACGCAGAGACACGACCAACGACCTGCTGGAGCTCGTGGTAAAGTTCGGTCATGGCGAGTGGATGGTGGGTTCAGTCTACTACGCCAGGAAAGACGACATCCCTCTGGCTATAATCATCCCCGCCGTCATCTTACCCATGCTGCTCTTCATCGCCGTGTCCGTGTACTGCTACAGGAGGAAGAGTCAGCAGGCAGAACGAGAATACGAGAAGGTGAAACACCAGCTGGATAATCTGGAGGAGAGTGTCCGAGATCGCTGCAAGAAAGAGTTCACAGATCTGATGATTGAAATGGAGGACCACACCAGTGACCTGAGCGAGGCCCGGATCCCCTTCCTGGACTACAAAGTCTACACCGACCGAAACTTCTTCCTGCCGTCCAAGGACGGCGCCAACGACACCATGATCACAGGGAAAATCCAAATCCCAGAAGCCCGCAAGGCCATCGTGGCTCAGGCGCTCAACCAGTTCTCCAACCTGCTGAACAGTAAAACCTTTCTCATCAATTTCATCCACACGTTGGAGAGTCGCCCGGACTTCAACGCACGCTCTCGGGGTTATTTTGCCTCCCTGCTGACGGTGGCGCTGCACGGCAAACTGGAGTATTACACGGACATCATGCGGACGCTGCTGCTGGAGCTGATGGACGAACACGTCCAGAACAGAAACCCCAAACTCATGCTCCGGAGgtCAGAGACGGTGGTGGAGAGGATGCTCTGTAATTGGATGTCCATCTGTATCTATCAGTTCCTCAGGGACACGGCAGGGGAGCCTTTATACAAACTGTTCAAGGCCCTGAAGCACCAGGTGGAGAAAGGGCCCGTGGACGCCAAGATGAAGAAAGCCAAATACACCCTGAACGACACGGGACTGCTGGGGGACGACGTGGAGTACTCCGTACTGACTCTGCAGGTGCTGGTGCACGGAGAGGGACCGGACGTGACTCCAGTGAAGGTGTTGAACTGTGACACCATCTCCCAGGTGAAAGAGAAGATCATCGATCAGGTGTACAGGAATCTGCCGTACTCGCAGAGACCAGAGGTGGAGAGTGTTGCCCTGGAGTGGCGTCCTGGCTCCACGGGTCAGATCTTGTCCGACCTGGACCTCACGTCCCAGAGAGAGGGACGCTGGAAGAGACTCAACACCCTGGCTCACTACAACGTTCGAGATAACGCCACGTTGGTTCTGTCCAGAGTTTTGCACACACAGTCTTTCCACCAGCATCAAGACAGCTACGAAGAGAAAAACGCCCTGCTGGAGGACGACAACACCTTCCACCTGGTGAGGCCGGCGGATGAAATCGATGAAGGGAAGTCAAAGAGAGGCAGCATGAAGGACAAGTCCATGACCAAGGCCATCACTGAGATCTACCTGACCCGGCTGCTGTCTGTCAAGggCACTTTGCAGCAGTTTGTGGACGATTTCTTCCGCAGCGTTTTGTGCGCGAGCACCGCCGTCCCTCCTGCCGTCAAATACTTCTTTGACTTCCTGGACGAACAGGCGCTGAGACACGACAACGTGGACGAGGAGACGCTGCACATCTGGAAGACTAACagCTTGCCTATGCGGTTTTGGGTAAACATCCTGAGGAACCCCGACTTCATCTTCGACGTGCACGTGACGGAGGTGGTGGACGCGTCGCTGCACGTCATCGCCCAGACCTTCATGGACGCCTGCACCAAGACGGAGCACAAACTCAGCCGAGAGTCTCCCAGCAACAAGCTGCTCTATGCAAAAGAGATTTCCACGTACAAGAAGATGGTGGACGATTACTACAAGGGCATCAGACAGATGGTTCCGGTCAGTGAccaggacatgaacacacacCTTGCTGAGGTTTCCAggCAGCACACAGACAAGCTGAACACCCAGTTGGCCTTACATCAACTGTACCAGTACGCCAGCAAGTACTATGATGTGATCATCCAATCTCTGGACGAGGACCCAGCGGCCCAGAATAAACAGCTGACCCTCCGCCTGCAACAGATCGCCGCCGCCCTGGAGAACAAGGtcactgacctttgacctctgacctcacgGAGGGGTCAGGGGGCGGAGCTAACGGCTACTAAAACACAGGATGTTTTCCATTTAAGGACTCAAAAGAGGATGAGCTCGCAGACTCTACCGAATGTTTGACCGTGTAAGGACCAAAGTGGGAGGGGCTACTGGAGCAATAGGAAGCTGTTGACCATATAAGGACtgaaggtgtgtgtgggggggggtggggggtggttaTGGGAATCCAGGAGGGGTAAGGAATGCCAGTTTTGGACAAATTAAGTGTAAAAATATACCCAGAGTTGTGGAAACTGAAGTGCTGGTATCTACTACAGTTGTATGGCGTACTTCCGTTGGCATCCCGACAAATACCAAGAAGGGATGCAAAATGGGGCGACCGTAATACGGCTGCAGATCGGAGCTCGGTGAAATCAAAGGGTTAATTTTGCAGTGGTAACTATGGCGTTCGGTATGTGTGATCCTCGGACCTAGCTGTTTCTGTGTTTGGCTTCTGTACAACGTTCATTTTAATTTGATCATATAAGGattgaagaaaacaaaagtgcCACACAAGGAATGAAGATTTTGGATAATTAAA

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0007165 signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306253 lncRNA upstream 35651 4164429 ~ 4165021 (+) True G225790
TU306247 lncRNA upstream 60395 4138528 ~ 4140277 (+) True G225785
TU306149 lncRNA upstream 149549 3996965 ~ 4051123 (+) True G225721
TU306160 lncRNA upstream 158946 4041405 ~ 4041726 (+) True G225725
TU306161 lncRNA upstream 158946 4041405 ~ 4041726 (+) False G225725
TU306265 lncRNA downstream 2023 4450060 ~ 4453432 (+) True G225802
TU306315 lncRNA downstream 25574 4473611 ~ 4475015 (+) True G225842
TU306316 lncRNA downstream 25574 4473611 ~ 4475127 (+) False G225842
TU306323 lncRNA downstream 41643 4489680 ~ 4490070 (+) True G225847
TU306387 lncRNA downstream 204930 4652967 ~ 4653360 (+) True G225891
XM_039791116.1 mRNA upstream 24848 4155295 ~ 4175824 (+) True LOC120553052
XM_039791111.1 mRNA upstream 93027 4093660 ~ 4107645 (+) False LOC120553050
XM_039791110.1 mRNA upstream 93027 4093661 ~ 4107645 (+) True LOC120553050
XM_039791112.1 mRNA upstream 94082 4093661 ~ 4106590 (+) False LOC120553050
XM_039791103.1 mRNA upstream 181630 3998734 ~ 4019042 (+) True LOC120553047
XM_039792070.1 mRNA downstream 35424 4483461 ~ 4492887 (+) True slc35e3
XM_039791692.1 mRNA downstream 47853 4495890 ~ 4522614 (+) False upf2
XM_039791693.1 mRNA downstream 47853 4495890 ~ 4522614 (+) False upf2
XM_039791694.1 mRNA downstream 47853 4495890 ~ 4522614 (+) False upf2
XM_039791695.1 mRNA downstream 47853 4495890 ~ 4520354 (+) True upf2
unassigned_transcript_1479 other upstream 3857 4196705 ~ 4196815 (+) True trnal-caa_19
unassigned_transcript_1478 other upstream 6760 4193802 ~ 4193912 (+) True trnal-caa_18
unassigned_transcript_1477 other upstream 9886 4190676 ~ 4190786 (+) True trnal-caa_17
unassigned_transcript_1476 other upstream 10333 4190229 ~ 4190339 (+) True trnal-caa_16
unassigned_transcript_1475 other upstream 11944 4188618 ~ 4188728 (+) True trnal-caa_15
TU306390 other downstream 209407 4657444 ~ 4657969 (+) True G225894
XR_005638175.1 other downstream 835722 5283759 ~ 5373203 (+) False abcc9
XR_005638176.1 other downstream 835722 5283759 ~ 5373203 (+) False abcc9
XR_005638177.1 other downstream 835722 5283759 ~ 5373203 (+) False abcc9
unassigned_transcript_1480 other downstream 2699232 7147269 ~ 7147340 (+) True trnaw-cca_35

Expression Profile