RNA id: XM_039792070.1


Basic Information

Item Value
RNA id XM_039792070.1
length 2270
RNA type mRNA
GC content 0.47
exon number 9
gene id slc35e3
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 4483461 ~ 4492887 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAAACGACGTTACACACGGAGGAAACAGGAACACACGGTCCGGTTTGGAACCAGAAATCACGGCTGTATTCTGCCGGAGTGCGAGTAAGAAAATCCAGCAGGACAGTAGCGGGGATTCGTCACTTTTAAGGCCGGTACTGGAGCTTCGACTGCCGGGGAGAGACGCTAACTCACGGGGTGATTGTTTGGCCGGAGcgagacagacagaagaagagaagcAGGGGAGACAGATGGAAAGATGGAGACCCCAGCGTGAACAACTATCTCAGCTAAGTTAAACAAAGCTCGGCTTGGGTAAGCTAAGCTAGGAGACCTCCAGAACCATGGCTGGGACGCTGTTAAATTTATCATCCAACAGGCGCATCGTCGCCGGCCTGCTGGTCAACCTGCTGTCCTCCATCTGCATTGTTTTTATCAACAAGTGGATCTACGTACACTATGGCTTCCCCAACATGACCTTGACCCTCGTTCACTTTGTGGTCACCTGGCTGGGACTCTACATCTGTAACAAAATGGACATTTTCTCTCCAAAAAGCCTTCCCATTCGCAGGATTGTGTGGCTGGCTCTGAGCTTCTGTGGGTTCGTGGCCTTCACCAACCTTTCCCTGCAGAACAACTCAATAGGAACGTACCAGCTGGCTAAAGCCATGACCACACCCGTCATCATCCTCATCCAGACCACCTACTACAAGAAGACCTTCTCCACCAAGATTAAACTGACACTgGTGCCCATCACATTAGGGGTGATATTGAATTCGTACTTTGACGTGAGGTTCAACCTGCTGGGGACGGTGTTTGCAACGCTGGGTGTTTTGGTGACGTCGCTTTACCAAGTGtgggTGGGAGCTAAACAACATGAGCTCCAGGTGAACTCCATGCAGCTTCTGTACTATCAGGCTCCTCTGTCATCGGGCTTCCTGCTCTGCGTTGTTCCCGTGTTTGAGCCGCTGACTGGAGACGGAGGAATATTTGGACCCTGGTCTCTACCTGCTCTGGTGACGGTGCTGTTCTCGGGTGTGGTGGCGTTCCTGGTCAACCTGTCCATCTACTGGATCATTGGAAACACCTCAGCTGTCACCTACAACATGTTTGGTCATTTTAAATTCTGCATCACTCTGATTGGAGGATACCTGCTCTTTCATGACCCGCTGTCACTCAACCAGGCATTGGGGATCCTCTGCACTCTGGCAGGTATCCTGTCTTACACTCACTTCAAGCTGAACGAACAGGAGGAGGGGAAGAGCCGCCTTGCTCAAAGACCGTAGGCTGACTTACCTGTCAATCAACTGCACAGACTCCCGCCGTTGGCCACAGGCTGAAgactctttatatatatatttttaagagTATTTTTTTAGTAGAGTAAGGATTTTCATCGTTGTTCTCCGACATGTCGACACATCCTCTGCTCTTCCCGTGGGTCTTTGCCCCAACAACACTGAAGCTCATCACACCGGCAGCTGGAAaatgaaaagcttttttttttttttttttgtaacttagGGATACTTAAAAATCAGACACCATCTTTGTTTTCATCCAAAGCAGATAAAAAGAACAGGCACAGCTTTCTTTTCAAAGAGCTTTTACACCGACGCATGCGAGAGGTCAAACTCACGCCCTGTCTGACGTATCTGATGACCTTCGATGCATTTAGTAACCAATCAAAAGGAGGCTACAGGTTTATGTCATCATAGGGTGGGCAGAGTTAAAGGACAGATTCTGTTAAAGACCCTTCGAGCGAAGGCACCAAACCTTCCTCTGCTGCTGGAGGCAATATAATAATTAGtagaagaataaaagaaaggCAGCTCAACATAAGATGATGTAAAGCAGTACATCGTCTTCCATGTGTTTCTGCTCCTTGATTCTTAGACCAACTATCGTGTGTATTTACCAAGCTTAGTGGATTGGTCCTGCTGTTTCTGGACTCTAAACAGTCCAGTACACCTTCTGTCAGGTCCTATCTTTAAGGGATTTGTCATTTAATGAAAACGTTTCTTGCTTTAAAGTGACAGTTGCTTTATCGTTTTTAATAACTGCTTGGCTGCACCATTCCAAACGTGTATTACACAATGGCCACTTGCCAAAggaaaagagacaggctgtgttcaaatactgtatgtgtttgtagtGAGTTTAAACTGTTAATTTACACACAATGtaccctttaaaggtcccatggcatgaaaatttcactttgagttttttttaacattaatatgcgttcccccagcctgcctatggtcccccagtggctagaaatggtg

Function

GO: NA

KEGG:

id description
K15285 SLC35E3; solute carrier family 35, member E3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306316 lncRNA upstream 8334 4473611 ~ 4475127 (+) False G225842
TU306315 lncRNA upstream 8446 4473611 ~ 4475015 (+) True G225842
TU306265 lncRNA upstream 30029 4450060 ~ 4453432 (+) True G225802
TU306270 lncRNA upstream 174073 4309107 ~ 4309388 (+) True G225807
TU306268 lncRNA upstream 212225 4270793 ~ 4271236 (+) True G225805
TU306387 lncRNA downstream 160080 4652967 ~ 4653360 (+) True G225891
TU306388 lncRNA downstream 163608 4656495 ~ 4656819 (+) True G225892
TU306391 lncRNA downstream 165297 4658184 ~ 4658631 (+) True G225895
TU306397 lncRNA downstream 215976 4708863 ~ 4709269 (+) True G225901
TU306440 lncRNA downstream 244448 4737335 ~ 4738306 (+) True G225935
XM_039792062.1 mRNA upstream 35424 4200672 ~ 4448037 (+) False LOC120553538
XM_039792061.1 mRNA upstream 35424 4200818 ~ 4448037 (+) True LOC120553538
XM_039792060.1 mRNA upstream 35424 4200818 ~ 4448037 (+) False LOC120553538
XM_039792065.1 mRNA upstream 35424 4200818 ~ 4448037 (+) False LOC120553538
XM_039792064.1 mRNA upstream 35424 4200818 ~ 4448037 (+) False LOC120553538
XM_039791692.1 mRNA downstream 3003 4495890 ~ 4522614 (+) False upf2
XM_039791693.1 mRNA downstream 3003 4495890 ~ 4522614 (+) False upf2
XM_039791694.1 mRNA downstream 3003 4495890 ~ 4522614 (+) False upf2
XM_039791695.1 mRNA downstream 3003 4495890 ~ 4520354 (+) True upf2
XM_039792156.1 mRNA downstream 50286 4543173 ~ 4563272 (+) False LOC120553579
unassigned_transcript_1479 other upstream 286646 4196705 ~ 4196815 (+) True trnal-caa_19
unassigned_transcript_1478 other upstream 289549 4193802 ~ 4193912 (+) True trnal-caa_18
unassigned_transcript_1477 other upstream 292675 4190676 ~ 4190786 (+) True trnal-caa_17
unassigned_transcript_1476 other upstream 293122 4190229 ~ 4190339 (+) True trnal-caa_16
unassigned_transcript_1475 other upstream 294733 4188618 ~ 4188728 (+) True trnal-caa_15
TU306390 other downstream 164557 4657444 ~ 4657969 (+) True G225894
XR_005638175.1 other downstream 790872 5283759 ~ 5373203 (+) False abcc9
XR_005638176.1 other downstream 790872 5283759 ~ 5373203 (+) False abcc9
XR_005638177.1 other downstream 790872 5283759 ~ 5373203 (+) False abcc9
unassigned_transcript_1480 other downstream 2654382 7147269 ~ 7147340 (+) True trnaw-cca_35

Expression Profile