RNA id: XM_039792080.1


Basic Information

Item Value
RNA id XM_039792080.1
length 2069
RNA type mRNA
GC content 0.49
exon number 10
gene id ttll1
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 10187418 ~ 10197239 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGAATTTCTTGTTTTAGAATTACCTTTAACAATGTAATtagttgaatatatatatatatatgttaacatatattatattacattgcAATAACtaagacttttattgtgaagagaAGTTTGACCGTGGTGGGCTTTTCGTCACTGTGTGTCCAGCTTCACGACGCCGAAATCAATAAATGTAGCCTTGTTAGCAATAAAACCGCTAACATGGAAGCAGTTATTATTTGATGCTAGCTGGAGCTATCAATGATGCTAACGAACTGTCGCTGTGTCTCGCTATGAGTTTAGCTAGCTAATGACAGTCTGGTGAGATTGCATCACTGACTGGGTGATGTCCGCCCAGCCTCTGCAGCACTGCTGGGAGGATTCAGCAGCCTGCTAACAGAGCCAGCCCGGCGGCTAGCTGATGCTGATGACTGGCTGTTTCCTGACATTGATTTTGGGAGGCACCATGGCCGGTAAGGTGAAGTGGGTGACAGATATTGAGAAATCAGTGCTCATCAATAACTTCGAAAAGAGGGAATGGGTTCAAGTTACAGAAAACGACGACTGGAATTTCTACTGGATGAGCGTCCAGACCATCCGAAACGTGTTCAGCGTGGACACCGGCTACCGCCTGTCAGATGAGCAGATGGTTAACCACTTCCCCAACCACTATGAGCTGACCAGGAAGGACCTAATGATCAAGAACATCAAACGCTACCGCAAGGAGCTGGAGAAGGAAAGCAGTCCGCTAGCAGAGAAGGACGAGAAcgggaaatacctttatttagATTTTGTTCCTGTGACATTCATGCTCCCCGCCGATTATAATCTCTTTGTGGAGGAGTATCGCAAGAACCCGTCCAGCACTTGGATCATGAAGCCCTGCGGGAAGGCTCAGGGCAAAGGCATTTTCCTCATCAATAAACTGTCCCAGATCAAAAAGTGGTCCAGAGACAGCCGCACCTCCACGTTTGTAGCAGCATCTAGTGGCAAGGAGGCCTATGTCATCTCCCTGTACATTGACAATCCTCTGCTGATAGGAGGGAAGAAGTTTGACCTGCGTCTCTACGTTCTGGTGACCACATATCGGCCTCTGAAATGCTATATGTACAAGCTCGGCTTCTGTAGGTTCTGCACAGTCAAGTACACACCCAGCACCAGTGAACTGGAAAACATGTTTGTTCACCTCACTAATGTGGCCATCCAAAAACATGGGGATGACTACAACCACGTCCATGGAGGCAAGTGGACGGTCAGTAACCTCCGTTTGTACCTAGAGAGCACCCGAGGGAAGGAGGTGACCAGCCGACTGTTTGACCAGATCCACTGGATCGTGGTGCAGTCACTGAAGGCCGTGGCTCCTGTGATGAACAATGACAAGCACTGTTTTGAGTGTTACGGGTATGACATCATTATTGATGACAAGCTTAAACCATGGCTTATTGAGGTCAATGCCTCTCCGTCGCTGACCTCCAGCACAGCCAACGACCGCATCCTGAAGTACAACCTCATCAACGACACCCTCAATATCGTAACGCCCAATGGGGAAATCCCAGACTGCCGCTGGAATCGCAGCCCGCCCCGTGAGGCCCTGGGCAACTATCAAGTCCTGTACGACGAGGAGCAGACGCAGAGCGAGAATGCCGAGCGAGACCTGCGGAGCCGCTCGAGTCAGTCCATGGGGACGAGGGGCACCAAGGGGAGTGCAGGCGCTCGCCCTGCTGCCGCCACCTGGAAGTGAGGTGATGCTGCTGACTCTTAATGGCTTCTTGTACAATATTACAGGGTCCAACCGGGGATAAAAAAGaaccagacttttttttttatcccagcTATTCGCTGAAAGACTGGTCCCTGTCTCCCACATGTCACTGACTGAGTTCACAGGGGGCGACAACCCTAGTGATGAAGGGGAGGAAAATCAACATTGTGGTCATATTTGGAGAGTATAAAGGTCGCCAGTTGTTGCTGTTTGTGTGAAGGCGTGACTACAAATGTAGACATTATGTTGGTGGGGTCGATGTCTCAACAGCAGCTCCCAGCCCAAGCTCCATATGAAGATAAGGAAAAACCTCCTAAAAAA

Function

GO:

id name namespace
GO:0018095 protein polyglutamylation biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638107.1 lncRNA upstream 250825 9934175 ~ 9936593 (+) True LOC120553125
TU307795 lncRNA upstream 319333 9867575 ~ 9868085 (+) True G226930
TU307786 lncRNA upstream 360893 9796473 ~ 9826525 (+) True G226921
TU307787 lncRNA upstream 380816 9806242 ~ 9806602 (+) True G226922
TU307781 lncRNA upstream 433302 9751944 ~ 9754116 (+) True G226918
TU308026 lncRNA downstream 340957 10538196 ~ 10538689 (+) True G227088
TU308047 lncRNA downstream 428207 10625446 ~ 10627982 (+) True G227107
TU308048 lncRNA downstream 431569 10628808 ~ 10630212 (+) True G227108
TU308058 lncRNA downstream 468470 10665709 ~ 10667280 (+) True G227116
TU308091 lncRNA downstream 508671 10705910 ~ 10709545 (+) True G227139
XM_039792082.1 mRNA upstream 4136 10175143 ~ 10183282 (+) True LOC120553550
XM_039792304.1 mRNA upstream 13304 10165497 ~ 10174114 (+) False def6c
XM_039792306.1 mRNA upstream 13304 10165537 ~ 10174114 (+) False def6c
XM_039792305.1 mRNA upstream 13304 10165651 ~ 10174114 (+) True def6c
XM_039792425.1 mRNA upstream 25764 10160731 ~ 10161654 (+) True LOC120553731
XM_039791715.1 mRNA downstream 3535 10200774 ~ 10225902 (+) True pacsin2
XM_039791717.1 mRNA downstream 3535 10200774 ~ 10225902 (+) False pacsin2
XM_039791716.1 mRNA downstream 3535 10200774 ~ 10225902 (+) False pacsin2
XM_039791718.1 mRNA downstream 3535 10200774 ~ 10225902 (+) False pacsin2
XM_039792107.1 mRNA downstream 29390 10226629 ~ 10234656 (+) True arfgap3
TU307644 other upstream 946069 9237264 ~ 9241349 (+) False ndufb2
XR_005638164.1 other upstream 1014198 9134594 ~ 9173220 (+) True lhfpl3
TU307294 other upstream 1754721 8426691 ~ 8432697 (+) True rps16
TU307011 other upstream 2787019 7396494 ~ 7400399 (+) False nrip2
XR_005638075.1 other upstream 2855159 7323070 ~ 7332259 (+) True amdhd1
TU308063 other downstream 500015 10697254 ~ 10699718 (+) True G227121
TU308097 other downstream 534830 10732069 ~ 10737503 (+) True G227141
XR_005638076.1 other downstream 751046 10948285 ~ 10986201 (+) False impdh1b
TU308205 other downstream 905597 11102836 ~ 11112905 (+) False G227216
TU308207 other downstream 905597 11102836 ~ 11112905 (+) False G227216

Expression Profile