RNA id: XM_039792093.1


Basic Information

Item Value
RNA id XM_039792093.1
length 2075
RNA type mRNA
GC content 0.59
exon number 15
gene id mdm1
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 3841996 ~ 3873319 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTAAGCTGCCATGGCAACGGCGTCGGCGGGCAGCTTGTTCCTGTAGCTAACCGAAGATCGACCGAAGATGAGGAGCAGCTGGTTAGCACGCTGGCCAACCTAGTTAACTAGTTAAACGATATTAACCAGCTAGTTAACTAAGTCAAAGCCAGCGCAATAAAAAGGAGTGACTTCTCGCGGGGTTTTGTCGGCGGAGAGAGTAGCTATGACCGTTCGCTTCAAGtgTCGGAGTGAATACCAGAAAAGCTACAGGGTTCCCCGGTCCAGAAGTGTGTCTCCTCAGCGCTGCGCTCCATTGGCCGGCCTGCGCTCCGACCAGATGGGTGTCAGCAGAGAACCAGGTCTCCAGCGTCGGAAGAGGCTCGGTCCTGGTGGTGTCGCTCAGTCCTCCGGCTCTCTGCTCTGTCCTCCAGATCCACAGCACACAacagctccccctgctgCCTCTAGGAGTCGCTCAGCCCACCGGAAGGAGTCTCCCATGAAGCCAAATCCTCCAACTCCTCCCGGAGCACGAGCTGACCCTGGATCTCCTGTAGACCCAGAACCTCCAGCAGGACCACGACCTGCCGCAGACCCAGAACCATCAGGAGAACCAGGAGCTGCGGTCACATTTGCGAAGCCCCACCCCTCCAAGCCCGATAGCCAACCGCAGCTGAGCCGACCTTTTACAGCAGCGCCTGACGGACAGCAGCCCTCGGCCAATGAGATGCTCCACTCCAGCAGCAGATCAGTGCCCCCCTTTAAGAAACACCCCGTTCCCATGGAAACAGAGTATCGGCGCAGCTTCCAGGGTCTGGCCCCGCCTGCCAAGCCCTGCCTACGGAAACACCTGGAACATCATCACAAAGTCCCAttgttccacacacacacgAGCAACAAAAAGAGAAGGCAGGAGTCAGAGAAGAAGGCCCGCCCCAAACATGATGTTCCTGCCCCTCGGAAAGAAGATACTGTGcccccttctcttcctcctcaagTGCAGAGAggacacaggaTGTTGACAGAGTATGAGTCCAGCTTTCGTTCTCCCCTCTACAGGATCCCAGAGGGGGGCGGAGCCACGGACGGCGTGGCCCTTCAGGTGAAGGAGTTGAGGCAGAAGGCCTTGTCGTACCGCCTTCGAGCCTGGGGGGCGAATTTCTCCAGAGATCACCTGAGCCAGCTGCTGTCCGAACACAACGCTCTGTGGGAGCCATCGGACACCACCGACTCGGCAActgacccccccaccccccgcctGACCGTTGACCCCTGTCATGCCGCTGACAGCCGCAGCATTTCCCCTGTGGAGGCCCTGGACCTGgccagCCAGTCCAGTAAGTCCAGTAAGAGGCTTTCTGTTACCGGCTCAgggaacaaaaacacagagacgAAAGCACAGACACCTCCTCGTCCTTCTGCTGAAAGGCGTTCGGCCtggggaggagaaggagaagcagaaggacaggaggaggaagaagaagaaaaaaacgatGAgGAGGAGGGAAGATTACCTACTCCAAGGCTGAAGATAGGACCGGTTCAGAGAACTCACCATGACCTCACCACACCTGCCACcgGAGGCGCTATACTGGTGGGAAAACTGAAGAGCAGTGATGAATCTTCTCCGTATAAACAGAGGTGTGGGTCAGCGGTTTCCATGGCAGCGGGGGCGGAGACTGCTGTCGACGTGCCAATCAAACCGAAGGTGGCGTGGCCGGACAATAACTCCCCCCACCtcccgtcctcctcctcctcctcctcccccccatcTGGCCCCGCCCCCGACCACAAACCAGCCTTGAGTCCTGCCTCTAAACCAATCAGGACGAAGCAGACGCCTCCGCCCCCTGTAGCCCCGCCCCTGCAGCACTGTATCCAAGGCACTCTGAGGCACGCCGACTTCCAGCACAACGGTGATCTGGGTCTGAGGTTCAGGGAGCTGCAGTGTTCAGGAGGAGGCTGCGGCTCTGACGAAGACGACCGTCTGTCGGTGATGTCGTGGCGTTCGGCGGCCTCCTGCTCCGTGGCGTCCGGCGTGCTGGAGCGCGCTCAGAAGAGACGAGACAACTTCTGGGGGAAGAGATGACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305948 lncRNA upstream 822 3835550 ~ 3841174 (+) False LOC120553144
TU305956 lncRNA upstream 9466 3831438 ~ 3832530 (+) True G225607
TU305949 lncRNA upstream 11049 3814481 ~ 3830947 (+) False LOC120553144
TU305951 lncRNA upstream 29583 3812130 ~ 3812413 (+) True G225602
TU305940 lncRNA upstream 40826 3747857 ~ 3801170 (+) True G225592
TU306118 lncRNA downstream 12394 3885713 ~ 3934899 (+) False G225707
TU306119 lncRNA downstream 12394 3885713 ~ 3934899 (+) False G225707
TU306120 lncRNA downstream 12394 3885713 ~ 3934899 (+) True G225707
TU306125 lncRNA downstream 12394 3885713 ~ 3934899 (+) False G225707
TU306126 lncRNA downstream 12394 3885713 ~ 3934899 (+) False G225707
XM_039791233.1 mRNA upstream 1737 3815706 ~ 3840259 (+) False LOC120553144
XM_039791231.1 mRNA upstream 41401 3736482 ~ 3800595 (+) True cand1
XM_039791203.1 mRNA upstream 274403 3546739 ~ 3567593 (+) True LOC120553119
XM_039791204.1 mRNA upstream 274403 3546739 ~ 3567593 (+) False LOC120553119
XM_039792207.1 mRNA upstream 341702 3420363 ~ 3500294 (+) False shank3b
XM_039792078.1 mRNA downstream 8854 3882173 ~ 3888180 (+) True il22
XM_039791103.1 mRNA downstream 125415 3998734 ~ 4019042 (+) True LOC120553047
XM_039791111.1 mRNA downstream 220341 4093660 ~ 4107645 (+) False LOC120553050
XM_039791110.1 mRNA downstream 220342 4093661 ~ 4107645 (+) True LOC120553050
XM_039791112.1 mRNA downstream 220342 4093661 ~ 4106590 (+) False LOC120553050
TU305947 other upstream 822 3832746 ~ 3841174 (+) True LOC120553144
unassigned_transcript_1472 other upstream 307324 3534600 ~ 3534672 (+) True trnat-ugu_40
unassigned_transcript_1471 other upstream 308335 3533589 ~ 3533661 (+) True trnat-ugu_39
unassigned_transcript_1470 other upstream 309916 3532008 ~ 3532080 (+) True trnat-ugu_38
unassigned_transcript_1469 other upstream 313435 3528489 ~ 3528561 (+) True trnat-ugu_37
TU306138 other downstream 62355 3935674 ~ 3938954 (+) False LOC120553793
unassigned_transcript_1473 other downstream 313242 4186561 ~ 4186671 (+) True trnal-caa_13
unassigned_transcript_1474 other downstream 314850 4188169 ~ 4188279 (+) True trnal-caa_14
unassigned_transcript_1475 other downstream 315299 4188618 ~ 4188728 (+) True trnal-caa_15
unassigned_transcript_1476 other downstream 316910 4190229 ~ 4190339 (+) True trnal-caa_16

Expression Profile