RNA id: XM_039792103.1


Basic Information

Item Value
RNA id XM_039792103.1
length 2543
RNA type mRNA
GC content 0.43
exon number 9
gene id LOC120553565
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 3110841 ~ 3117640 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAAACCATCTCCCTCCCGGTCTCTCCTCACTTCTCCGCTGCAGTCGGATCTTCATCACCGTTAAGAACAATACTAGTGTTGTTTTCCCATCTTTAAACATGCCTCAGGTCAACAGCTGCCTCAAATGGCTCCTAACCATCTTCAACATCCTCTTCGCGaTTGTCGGCATCGTCATCATCACGCTCGGTCTGACTTCTCAGTTCAACTACGTGAACGGAGTCATGAATCTGGACTTGAAGCAATCACACTTCTACATCGTGGGCTCCATCGTCATGGTGATTGCCATCCTGGGAGCCGTTGGCGCCTACAATGAGAGCAAGGCGTGCTTGGTCCTGTTCCTGGTGTGTATGATTCTTGGAAGTATTGCGATGCTCCTCCCTGGAACCTTAATGGCTGTCTTCCGTTCCGAGGCGGCAAGCATGCAGGATAATCCTTATGATGGTCATCTGCCTATGGACCAAGCTTCACCCATTAAGAGACAGGATGTCGAAGAAATGCAGATGgagatgCAGTGCTGCGGTCTGTTCAGTTATGAGGACTGGAAGGGAAACATCCCCGACTCTTGTCTGTGCAGCAAGTTGGATGAGATGGAGGGAAAGTGTCAGACAGTCGACTACGGACAGAAGTCTGTCTACAGCAAGGCCTGCTTCCCCATCATCTTCTCCGGGATCATGCAGCTCTATGACAGCGTCATGGCGAGCTTCTTAACTCTGGCTGTCCTGGGGCTCCTGGGCATGGTCCTGTCCTCCGTCATGATCCACCAGCTGCGTTCCCCCAACAGACCCGTTTTCCTGATGACGGCGCCACCCTTCACCAAATCTCCCCAATACGAGGAGCTTCACAACGTTCTTCCTCCAAAGTACTACTAGAGGACCACCGGCTTCCCTCAGACTCGCTGTTAAAGGTCAGGAAGTCCAGCTGTTTGTCCCAGTGTCCAAAGTGCCTAAACGTCCAATGAGGAGTCCCGGCTGTCGGCTCCATCCAGATCAAACGCAAAgcagctttttctttttaagatttattttgggcattttagtaAATTGAGATCTTTGTTTTTATCTGCAGCAACATTATTATTCATTTCGAATGAATGTGATGGGTGTGTGCTTATTGAACGCTTATGTTTTGTACAAATACAACCAGAGAGGGTTGGGTTTGTGGAtgatagaatggttatatagggtatttcacgcTGTTCCTAacagggtatgtaacattggttgggctgaaaatgtctcttttgctgttttttttttttttttattgttttttggcCCTAATGGGACTGGACtgaaacaagagcttttctgccttatatggtctgctcatgaatatttagatgagctgtacactgattggttgagcttagcacacacacacacacacgttccccTCTGTGCCCATGTGATGCGacctagatttagaagactatctgacctcagatcagttagtggcctagtatgtacattttggggcgttacaaagatagaaggtagagccaaatgaggaggagttgAGAAGttaacttttagctttgttcagattGGCCTGTTTTCAACAGCAGTTCCAAATtatgagatttgcagaggaaagaggtgtcaatgggatttagaggttctctGTATGTCCtatatttaccctccaaacttcatttttcaactatgacaaggtagtcggttttgcattctatcgcCCCTTTTTAACGTTTTTCTGTCACTGTTCTTCTGATAATCACAAGCTTATTAGTTCTCAAGAAAATGGTCTCGTTGCTtgaattcagactttttttttctaaggaATTTAGTACCGAAAAATGCTCTTCTGAATAAACGCACAACAGTTTTTCACCAGCAACACAATCTAGCCAAGATGTAGATGTAAGGATGATTTCAGGGtggtttctggttaaacaaaaaggatctgaTCTATAACAGAAAGCTCTATCTCTGCAGGGATCCTTTCCTTAATGTAATTGGGGGTGGGGGACATTAGGTGGGGAGGTCTGGGGCCTTCCTGACCTTGACCCCGGTCCTACAAGACTGGACCAAGACGCTGCCCTGGAATCACATCTGGTTGGTCGGGCTGCAAATGAAATGacggataatttttttttctacaaattgTTACTGTATAATTTTTGTGTATTGTTATACTGCATACttaacagtatatatatttttttaaagatttcttactgtcctttctgttttttattctttatatgcTCTCAAATATGTTGTACTATTGGCCAATAAAGACATTCTCAAAAATGTTGTACCAATGTACATGCAGACCTGTGTTAGAAGGTTTTTcatactttgtttacattgtgaaTCCTGCTTACTGTAAGTGGGTCCAATCACACCACTACTCAGGGTTTCCTGACAAGGTTTGATGCTGAACATTATCTCCTTTCTGTATGATGATGTGGTTCAGGGTTCTGGATATATTTTACACTGTACTTAAAagtctgattttatttttagttgcTCTGTATGGCTGGCACCTActgcagaattgacaataaagtcgccttgacttga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638091.1 lncRNA upstream 3213 3104725 ~ 3107628 (+) False LOC120553060
XR_005638090.1 lncRNA upstream 3213 3105824 ~ 3107628 (+) True LOC120553060
TU305720 lncRNA upstream 37273 3072934 ~ 3073568 (+) True G225467
TU305719 lncRNA upstream 41531 3060053 ~ 3069310 (+) True G225466
TU305713 lncRNA upstream 59209 3048148 ~ 3051632 (+) True G225460
TU305730 lncRNA downstream 55377 3173017 ~ 3192309 (+) True G225474
TU305732 lncRNA downstream 58272 3175912 ~ 3195624 (+) False G225475
TU305731 lncRNA downstream 77251 3194891 ~ 3195624 (+) True G225475
TU305746 lncRNA downstream 110036 3227676 ~ 3228033 (+) True G225481
TU305700 lncRNA downstream 128727 3246367 ~ 3249323 (+) True G225448
XM_039792515.1 mRNA upstream 253176 2798467 ~ 2857665 (+) True LOC120553800
XM_039792264.1 mRNA upstream 359159 2714117 ~ 2751682 (+) False LOC120553634
XM_039792417.1 mRNA downstream 58900 3176540 ~ 3246203 (+) True LOC120553724
XM_039792418.1 mRNA downstream 143039 3260679 ~ 3302750 (+) True LOC120553725
XM_039792284.1 mRNA downstream 211310 3328950 ~ 3347986 (+) True cct2
XM_039792285.1 mRNA downstream 211310 3328950 ~ 3347986 (+) False cct2
XM_039790999.1 mRNA downstream 235269 3352909 ~ 3377335 (+) True nots
unassigned_transcript_1464 other upstream 178112 2932657 ~ 2932729 (+) True trnat-ugu_32
unassigned_transcript_1463 other upstream 186646 2924123 ~ 2924195 (+) True trnat-ugu_31
unassigned_transcript_1462 other upstream 188275 2922494 ~ 2922566 (+) True trnat-ugu_30
unassigned_transcript_1461 other upstream 188939 2921830 ~ 2921902 (+) True trnat-ugu_29
unassigned_transcript_1460 other upstream 189976 2920793 ~ 2920865 (+) True trnat-ugu_28
TU305697 other downstream 12304 3129944 ~ 3131302 (+) True G225445
TU305747 other downstream 126729 3244369 ~ 3246160 (+) False LOC120553724
TU305886 other downstream 378139 3495779 ~ 3500144 (+) False shank3b
unassigned_transcript_1465 other downstream 392440 3510080 ~ 3510152 (+) True trnat-ugu_33
unassigned_transcript_1466 other downstream 399910 3517550 ~ 3517622 (+) True trnat-ugu_34

Expression Profile