RNA id: XM_039792107.1


Basic Information

Item Value
RNA id XM_039792107.1
length 3836
RNA type mRNA
GC content 0.42
exon number 16
gene id arfgap3
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 10226629 ~ 10234656 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCATGATGTTCTCCTATTGACGTGTCGTATtcggaaaaacacacacagggctgTTTTTCATGCTACTTCGCTGTGTAACCACCAGTTATTACCAACAGATAGAACAATGTCAGAGCCCAGCAAGCAGGACATTTCCACTATTTTTAAGCGACTTCGCGCCATCCCTACGAATAAGATTTGCTTTGACTGCTCAGCTAAAAACCCCAGTTGGGCCAGCATCACCTACGGTGTATTCCTGTGTATAGATTGCTCTGGGACACACAGGTCTCTTGGGGTGCATCTGACCTTTATCAGGTCCACTGAGCTGGATTTCAATTGGTCTTGGTTTCAGCTAAGATGTATGCAAGTGGGAGGCAATGCCAGTGCGatgtcatttttcagtcaaCATGGGTGCACGACCAGTGCTGCCAATACCAAGTACAACAGCCGAGCTGCTCAGCTGTACAGGGAGAAGATAAAGACTTCAGCCACGCAAGCCACCAGATCCCATGGCACTGAGTTGTGGCTTGACAGTCAGGCTCCTCTCTCCCCAACATCACCGGACGACAAGCAAGTGGATTTCTTCAGTCTTCATATACAGGCTCTTCCTGAAAATGTGAACACGGCCAACACGGTTCAAATGTGTCTCAGCTCCTCCGCATCAGAGAAGCCTTTAACCAGGGGAAAAGAGGAAGACGGTAATCTAGATGAGGGTCCTAGTGTGGAGATGCTGACTGTTTCTACAGAATCAAATCTAGAGCATTCCTCTCTCCTTAAGAAGAAGCCAACTGCCGCCAAGAAAACCTTGGCCTCTAAGAAAGGCGGTCTGGGCGCTCAGAAGGTTAGCAGTAAGAGTTTCTCAGATCTGGAGAAGAAGGCTCAAGCTGCCGACAAGctcagagagaaagaagagaacacTGGTGCTTCCAAGAAGAGCAACCAACCTGAGGAATCCATCTCTCCATCCCTACGACTGACCTGTAAAGATTTTGAGCAGCAGAGGAAAATGGAGGAGAAGAAGTTGAAGGGATTAAAGGGGAATAAGAAAGAGCAAGCTGAGAGACTGGGCATGGGTCTGGGCATGAGGAGTGGAGTGTCTCACTCTGTCACATCGGACATGCACATGATCCAGCAGGAgagtccactggggaccaagACCACCAAGGCGCGACGGTTCACCGAGGACAACGATGATGAAGGGTCCTTCAGCTCTAGGATTTTGTCCCGGTTTGAGGATCAAACAGAAACGTCAGATAGTTTCTCCTCGCTGTGGGATGATAGAGGTGAAGGAGGCTGGCTCAAGGAGAGCAAGAAACCAGAGCCGGACTTCTACTTGACCTCCACTATATCATCACTGAATGACAGGCCCACAGCCAGAAGAAAACCAGAAGCAGTGCCAGTATCGGACACAGGAGAAGCTCAGAAAAAGTTTGGAGGCGACGTGAAAGCCATCTCTTCTGACATGTACTTTGGAAAACAAGATAACTCTGAGTATGAGGCCAAAACACGACTGGAAAGGTATTCTGGGAGTGCCTCTATAAGTTCAGCAGACCTCTTTGATGATCCAAAGAAACAGACTGTGAGTTCCTACCGTCTGACCAACGTGCTGCCCAGTGCTCCTGACATGTCACAGCTCAAACTGGGAGTGCGCTCCGTGGCAGGAAAACTCTCCGTCATGGCCAGCGGCGTAGTTAGCTCAATTCAGGACCACTACAGCTCCTGAGTCATGGTGTGTGGCTTCTGTTAGATTCAGCGCCCTCATAGTTGGCCCAATGAGTGGTGGTCACTCATCCTTGGAGCAAAAgagtttattttagtttatttagttaTTGCTTATTTTACTTTGGGGTCTTGgggtttaaatatatatataaaaaaaaaaaagtatatgtaGCAGATGGTTTGTGGTGTTTTGAAGGATGGATTTGCGTTCTGATTTCTTTAGTTGatgatgtgtaaaaaaaaaaaaaaaaacctaaggAGTAGAGAGTACTCAGTTGTAAGTTTTTAATTGGTTAACCTACTCTCACTCATCATGTGCACTCTGTATTGTGCTTTTTTTGCACATTCCCACAGGTTTGAAAGTGTCCTTTCCGTCCCCAAAGTGCACTTATTTTTGCTCTTTCAAAGACGGGACCAAAACCTGATAACGAGGCCTTGGGGGaccagatatatattttttaatcacacatactatcagttatgtagcctcaTTAACACATTAGCTACATTATCTTGTGAATAgttatgtttttctttgtttttgcagGCCATGCATCTGTTATTATAAAAGGACAAGATGGCATGAAATCTATGCAGCTATTAAAAATTGAGTTTGAAGGATATgctcattcactttcttgccagGAATACggtgagaagattgataccactcttatcTGTCGGTTTAATACGAAGCTGTAGCCAGGAGCCGGtttagcatagcttagcataacgACTGGAAACAggagctagcctggctctgtctgtaGGCAACAGTCTGCTTACCAACCAGCGTGATAAAACGTTTGTAACCTTTGGATAGAGCCAGTtagctgcttccagtctttatgctaagcttacTGGTTAGTCCTTTAGCAATCTAGCTGATAGCGTTAGAATAACCCTGCTTGATGTAGGTCAATtgcactgtgtttttttttttttttttttctcatttctgtTGCTTGGAATCAGACACTTTAAGATGTTGTAATTGATAATATGGTCAACATTGTAAGCAGTAGATTATTATTTTGAGGGGTTCCTTTTgatgatgttttgtatttaatttgtaGCTGTTTTTGTACGTCCGCTGTGACATTCTACATTGCCCCCTTTGGTATAACATTTAATAGCCCACACTTGGAAGGCTAGAATTATCTGATGCGGACCTCTTTGTAGCTTTCAGGCCCCATTGTACAGCAACACATGTCCACTTAAAATATGACTGAAAGCAATCCCTTTTTAAAGGCCtcattttgttgttgctgtaacaTACTGCAAAAGtcataataaataaatcgcACTACAATGTGGTGCTATAATGTGATTTTGGATTTGGCATTTAAAAGCAATAGAAAAACAGGCTCTGAGGTGGAATAACCACGGCTTGTGCTTTAGCATTAAGGTCAAATTTGCCATGATGCTTAAAATCTAATTGTGCAGAGTTAACAGACTGGAGTTTTTTAAGCCCTGGTTTGGGAACTGGATGATTATATTACTGAGCAATTTCTGTACTGTAAATGCTTCTCAGGAGTTTGAGTTGTTAAATAAGAAACACTAAAAGTGAAAGTTGTAGATCCTTCAATGACCAAATATTTGTTTACTCCATCACTCTATGCCTTAGTCCAAAGATCTCTGATTAACGCGCCCTCATATTGCAATATTGTGCTGGCTATCTTTTTGCACATTATTTTGTTAGAAATTGCATGTGGCAGCTTTTGcttgaatgtactgtattgCAATTCAACATTTGCCTCTAAGGTGACGTTGCGTCCATGTTAGACTTTAATTTAGTTGATCTTTGTTTGTCTTCTGCTGTTAAATATTGTTAAAGGTTACCTAAAAGAATAGTAGCTTGTGTAATTAGCATGGCCCTTGTAGTTAATAGGACATGCTGAAAAATCCTGAATACAAGATAGCATACTGCCGTTGGGAGCCATTAAATAATAATGGAATAACAGAATTGATCAATAAAAGCTATATTATAGTACTGCTACATACAATGTTGTATAGGGCTTTGAATTACCAGTTATAGAAAGCTACTGATAATCAagttttgacatattttgacaCTCAAAATGGAAGTAAGATTTTTGGAAACACGCCAAATAAATGGCTTGTGCCGAACTCTT

Function

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K12493 ARFGAP2_3; ADP-ribosylation factor GTPase-activating protein 2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638107.1 lncRNA upstream 290036 9934175 ~ 9936593 (+) True LOC120553125
TU307795 lncRNA upstream 358544 9867575 ~ 9868085 (+) True G226930
TU307786 lncRNA upstream 400104 9796473 ~ 9826525 (+) True G226921
TU307787 lncRNA upstream 420027 9806242 ~ 9806602 (+) True G226922
TU307781 lncRNA upstream 472513 9751944 ~ 9754116 (+) True G226918
TU308026 lncRNA downstream 303540 10538196 ~ 10538689 (+) True G227088
TU308047 lncRNA downstream 390790 10625446 ~ 10627982 (+) True G227107
TU308048 lncRNA downstream 394152 10628808 ~ 10630212 (+) True G227108
TU308058 lncRNA downstream 431053 10665709 ~ 10667280 (+) True G227116
TU308091 lncRNA downstream 471254 10705910 ~ 10709545 (+) True G227139
XM_039791715.1 mRNA upstream 727 10200774 ~ 10225902 (+) True pacsin2
XM_039791717.1 mRNA upstream 727 10200774 ~ 10225902 (+) False pacsin2
XM_039791716.1 mRNA upstream 727 10200774 ~ 10225902 (+) False pacsin2
XM_039791718.1 mRNA upstream 727 10200774 ~ 10225902 (+) False pacsin2
XM_039792080.1 mRNA upstream 29390 10187418 ~ 10197239 (+) False ttll1
XM_039792382.1 mRNA downstream 360 10235016 ~ 10239349 (+) True LOC120553694
XM_039792383.1 mRNA downstream 378 10235034 ~ 10241505 (+) False LOC120553694
XM_039792426.1 mRNA downstream 15102 10249758 ~ 10284100 (+) True uhrf1bp1l
XM_039791996.1 mRNA downstream 53821 10288477 ~ 10522237 (+) True anks1b
XM_039791997.1 mRNA downstream 54370 10289026 ~ 10522237 (+) False anks1b
unassigned_transcript_1483 other upstream 31423 10195120 ~ 10195206 (+) True trnay-gua_59
unassigned_transcript_1482 other upstream 32113 10194430 ~ 10194516 (+) True trnay-gua_58
unassigned_transcript_1481 other upstream 34217 10192326 ~ 10192412 (+) True trnay-gua_57
TU307644 other upstream 985280 9237264 ~ 9241349 (+) False ndufb2
XR_005638164.1 other upstream 1053409 9134594 ~ 9173220 (+) True lhfpl3
TU308063 other downstream 462598 10697254 ~ 10699718 (+) True G227121
TU308097 other downstream 497413 10732069 ~ 10737503 (+) True G227141
XR_005638076.1 other downstream 713629 10948285 ~ 10986201 (+) False impdh1b
TU308205 other downstream 868180 11102836 ~ 11112905 (+) False G227216
TU308207 other downstream 868180 11102836 ~ 11112905 (+) False G227216

Expression Profile