RNA id: XM_039792113.1


Basic Information

Item Value
RNA id XM_039792113.1
length 2882
RNA type mRNA
GC content 0.52
exon number 17
gene id LOC120553569
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 21234254 ~ 21261702 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aaaaaaatgaaGTCAATTATACAACACCCTGCTATCTGCATGTagctcccctcctctcctctgttacTACTACAGCTGGTGGCTGGCTCCACATGCAGCGCTCCGTATCCGTCACCGGCTCCAGTCTATAGGCATGTCGGCCGGTGGCTCTGACGGGACAGCGGACAGGCCAGCAGATCTCGCTGCAGACGGGGAATGCCCAGAGCAAGCAGGCTCCTCGCTGCCAGCTGCCGAGCTGCCGAGGAAACGAAAGGGAGACGTGGAGGAGAGGTCAGGCACCCATGGACAGCAAAGTGTTGACTTTCAAATGGACGATGACCTCAGCAGATCTGAAGGAGAGGATCAGCAAGTCAAAATGAAATGCTTCAGGGAGCCTCACCGACAGATTGAGAAGCGGCGGAGGGATAAAATGAACACCCTCATTGACGAGCTGGCGGCCATGATCCCCGCCTGTCAGCCCATGGCACGAAAACTCGACAAACTCACTGTGCTGCGGAAGGCTGTGCAACACCTGAAAGCCCTCAAAGTTGGGACAGGCAGCGCCTTTACAGACACCACCTCCAAGCCTTCAATCCTGTCTCACGATGACCTCAAGCACCTTCTCCTCAGGGCTGTGGACGGTTTCCTGTTAGTTGTAAGTTGTGACCGGGCCAAAATCCTGTTCATCTCCGAGTCCGTCTCCAAGATCCTCAACCTTAGCCGGTTGGAGCTGACTGGGCAGAGCTTGTTCGATTTCATCCATCCCAAAGACATCAACAAGGTGAAGGAACAGCTGTCGTCTTCGGAGTATCCTCGCCAGTGCCTCATTGACGCTGCAACCGGGGTTCAGGTGCAGGTGGACGCCCCCGCCAGGCCGCCCCTCTTGTCCACCGGAGCCCGGAGATCCTTCTTCTGCCGGTTGAAGCACAGTCGGGTGGTGGGGAAGCAGGACAAACACTTTCTGCCCTGTACTTCCAAAAAGAAAGACTCTTCCAGATACTGTACCCTCCACTGCACTGGATACATGCGCAGTTGTCCGAGCAGCCAGCTGGACTCAGAGTGCGACGGCGAGATGGAAAGCTCTGACCTAAGCTGCCTGGTGACGGTGTGCCGCCTGCTCACTCCCGTGTCCCACCAGCCTCCCAAAGAGCTCACCATCAGGCCCTCTGAGTTTGTGACCCGCTGGGCCATCGACGGCAAGTTCACTTTTGTAGAACAGCAAGCCACGACAATTATCGGTTACTTGCCGCAGGAAGTTCTCGGCACGTCGTGCTATGAGTACTTCCACCAGGACGACCTGCTGCACCTCGCAGACAAACACAGGCAAGTTCTGCGAAGCAAAGAGAAGATCGAGACACGGTGCTACAAGTTCAAGACAAAATACGGCTCCTACGTTTCACTCCAAAGTCAGTGGTTTAGTTTCACAAATCCATGGACCAAAGAAGTCGAGTTCATCGTGTCTTCAAACCAGGTTATCTCCAGGGGGCCTGGTCACACAAAAGATGAGGAGGCAGGCAACTCAAAAGCACTTCAGGAAGACACAAAGCAAATACCCATAATTCCTGGCCTTTCCAGTGGTTTGGGCACAATGATCTACGCAGGCAGCATAGGGACCCAGATCGCAAACGAGCTCATGGACTCCTACagGATGAACTCGTCTCCATCCAGCGGGGCTTGCAGTCCGTTTGGCCCGGCCCAGGAGAAGTGTCCAGTGGTTTCCCCACTAACCAGCACCAGTGCGTCCAGCAGAGAGGAGGCATCAGGCAGTTCATCCCAGTCCCAGTGTGACTCGAGGACAGCAGCGGGCGCGAGCAGTGCAACTTCTGAAAGCTTGGCTGCTGTCAGCAGGATAAACATTAACCCAATCCAAGGCGAGACGTCCCAGCTGGACTTGGACTTGGTGCCGGGCCTGAGCAGCTTCAGCAGCGACGAGGCAGCCATGGCGGTCATCATGAGCTTGCTGGAGACGGATGTGAACATGGGTCAGTCGGGGGACTTTGAAGACTTACACTGGCCTTTCTAGAGGACGCGCAGACATTAAGCTCTCACGCAGAGAACTCGTTCACTGGTTTGCTCTGTGGCCGGCTGAGCTGCCCTTACACATTTGAACCCAATGAACAAGTCGTACTTGAGGAAGCCGGACAAATAGAAAAAGTTAATAGAAATAATTGTTACTGTGATTAACTTGTTGGTCCCCCCTGGCTCTCGCATGAAGGACTGTTAGGTTcaagtttgttttatttaagatacatttttttttgccattttaggccttttatttgtgacaggacagcttagacatgaaaggggagagagagggggaatgacatgcagcaaagggccgcagttcAGAACCAAACCCGTGGCTGCTGCGTCCAGGACCGAGCCTCTCTGCACATTGGCGCGTGCTctgccaggtgagctacccaggcacctgAATGTGAGGTTCAAGGGTTCCCCGGAGCCTGTGGAGATTCAGTGTCTTCCTCTGTGACACTTCCTCTTAAACCCAGACTTTCCACTGCAGAACGATTGAGCTATTCGCTCTGCTCGGTCCCCCAATGAGTGACCGAGGCCCCGGGGGGGGAATCAGACTCCTGCCATGTGCAGTGTTGCTAGAGAGACTACTAAAACCTTCGGTACCCGGTGATGACATACATGTTTTTCATAACACGGTGTGATtgttccatgttttttttgttttttttactcagttTTTAGAAGATCCCCTCCAGACCCATTTTAAGtcatgtaaaaaatactctgttgaGAAGTGTTGTGCCGATATTGTTTCCAGTAAGTACTGAAGAAGGCTAAAAAGAACGTCAATGCTTTCCTCCCTTAATTGAGAATTGCATTATACtggtatttttatattatatttcccctttctggtctacata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310999 lncRNA downstream 34995 21198468 ~ 21199259 (-) True G229248
TU310982 lncRNA downstream 171818 21019259 ~ 21062436 (-) True G229235
TU310983 lncRNA downstream 171818 21019259 ~ 21062436 (-) False G229235
TU310905 lncRNA downstream 366725 20867300 ~ 20867529 (-) True G229172
TU310901 lncRNA downstream 454346 20779683 ~ 20779908 (-) True G229168
TU311069 lncRNA upstream 2799 21264501 ~ 21264812 (-) True G229296
TU311129 lncRNA upstream 188761 21450463 ~ 21453152 (-) True G229351
TU311131 lncRNA upstream 188761 21450463 ~ 21453152 (-) False G229351
TU311122 lncRNA upstream 199374 21461076 ~ 21461460 (-) False slc38a2
TU311121 lncRNA upstream 199435 21461137 ~ 21461460 (-) False slc38a2
XM_039791074.1 mRNA downstream 50398 21153577 ~ 21183856 (-) False slc13a4
XM_039791073.1 mRNA downstream 50428 21153201 ~ 21183826 (-) True slc13a4
XM_039791070.1 mRNA downstream 88721 21063691 ~ 21145533 (-) False ptprz1b
XM_039791727.1 mRNA upstream 8172 21269874 ~ 21293236 (-) True LOC120553384
XM_039791881.1 mRNA upstream 33811 21295513 ~ 21301256 (-) True med21
XM_039792072.1 mRNA upstream 73835 21335537 ~ 21365108 (-) False gas2l3
XM_039792073.1 mRNA upstream 73835 21335537 ~ 21353473 (-) True gas2l3
XM_039792251.1 mRNA upstream 199435 21461137 ~ 21474602 (-) True slc38a2
XR_005638087.1 other downstream 88721 21063691 ~ 21145533 (-) False ptprz1b
TU310933 other downstream 276034 20957657 ~ 20958220 (-) True G229199
TU310704 other downstream 1111915 20067036 ~ 20122339 (-) False rerg
TU310602 other downstream 1394952 19811245 ~ 19839302 (-) False etv6
TU311312 other upstream 509386 21771088 ~ 21811031 (-) False LOC120553090
TU311319 other upstream 509434 21771136 ~ 21811097 (-) False LOC120553090
TU311637 other upstream 1843058 23104760 ~ 23239573 (-) True G229716
TU311825 other upstream 2430319 23692021 ~ 23711795 (-) True LOC120553170
TU311851 other upstream 2437995 23699697 ~ 23700198 (-) True G229907

Expression Profile