RNA id: XM_039792118.1


Basic Information

Item Value
RNA id XM_039792118.1
length 2756
RNA type mRNA
GC content 0.41
exon number 6
gene id lin7a
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 8475630 ~ 8510314 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tttctctctctctctctctatgtgtgtgatGCTGCAGCTCCTGTAGTCTCCAGTCTCCAGTAAACAGCAGTCATGGCGACAGTGGTCCAACCGCTCTCTCTGGATCGAGATGTTGCCAGGGCTATCGAGCTGCTGGAGAAGCTGCAGGAGTCAGGTGACGTGCCTGGTCACAAGCTCCAGTCTCTGAAGAAGGTCCTTCAGAGTGAGTTCTGCACAGCCATCAGAGAGGTGTACCAGTACATGCATGAAACCATCACAGTGAATGGCTGTCCAGAGTACCAGGCCAGGGCCACAGCTAAGGCCACAGTTGCAGCCTTCGCAGCCAGCGAAGGTCACTCCCACCCGCGAGTGGTGGAGCTACCCAAGACCGAGGAAGGGCTGGGCTTCAACGTGATGGGTGGCAAGGAACAGAACTCCCCGATCTACATCTCCCGCATCATCCCTGGAGGCGTGGCTGAGAGGCAGGGCGGCCTAAAGCGAGGGGACCAGCTCCTGTCCGTCAATGGCGTGAGCGTGGAGGGCGAGCACCACGAGAAAGCGGTGGAGCTACTGAAGGCGGCCAAGGACAGTGTTAAGCTGGTGGTTCGCTACACCCCCAAAGTGCTGGAGGAGATGGAAGCTCGCTTTGAGAAGCTGCGTACGGCCCGGCgacgccagcagcagcagatcctcatgcagcagcagcaacagcagcagaacGTGGCCTCTCAGCAGAACCACATGTCGTAGGTTGttccaaaaaaagaagaagtgaaGGTGAGCGAAAAGGTGGATCTCAAAGACCATCTGTCTGTTGTTGAGGATCCCAAAGGAATCTCTCCGTCGTGGAGGAAACCAACAAGTAGAAGACTCTTTtacttcctctctcccttccagTGTACCACCGATTACTGAGCAAAAACAAAGAGAGCCGTTTGTCCTGAAATTGGTGCTTTGAAAGACAAGTATGAGGGAGGCTAGCACTAAAAGTTGTCCATTTTAACTTTGTATTCACTTTTATAAGTTGTTCTCCCCCGGTTGTGAGTCTTACTGAAACTCCCTttcttgtgtttgttgttttgtttacagTCATCCATTTTTGATTGTTCACCGACTTCCACTACACCGCGGCACCTTTGCCATTTTGCCATAGATGTCATGTGTACAGTGGTGTTTCTATTAATTCTTCAACAGGTGCTTGTATCTCTGTATGAATGACCatcagtttcttttctttttttgtcaaacttGTCCTGTTTTGGAATAAACGTGGACTCTTTTTTTACCTTCTATATTGTAGCAGGAAAGATTTTGTATCTTGTAGGTTTAGCAATAACACACATCCTTAAGTTTTTTCATTCTTTGACACTAAATTCACAATCggatacatgcatatatacagaGTTTATGGGATATGTGCACATGTAAATCATTGTAAAGTAAAATGGGTCTTATGTACTGTAAGGCAGCTTCTGTGTCCAGTATATCCTCTGTGCCATTTAAAGAGATTATTGATTTACAGGTGGCATGAATAATTATTGTGCAATAACTGTGATTATTACCAGACTTGGTAAGCCACTCCTAACTGAGATTTATCTAGAAAATATACCATGAGACCAAGATGTTACCAAGAAATTTTACCAAAGTTAAAATCAGTCCTCAGAAATGTTATATGTCGTGTTCTCGACAAACAGAATGTCACCAGTTTTTATTCGAACAGAGTGGGAAttaaatcaaaaataatgcTATAATTGTTGTTCAGTCTATTTTATAGTTTATGAGATCATAGATAtatcatttattcattttattgttCCTTTTAAATATTATGTATTCTTTCTAAGATGTGCAGATTATTATTTATTCCTTGTATAACAGCTGAATATTAGCACATAGTTCATGTAGATCCTGGTTTCTGTTTTGACAATCATTTTGAGAAGTTATTACGAGACTGAGTGGAATGTTTCACTTCCTGTTATCCTCCGTACCTGTAACGGAAATGTTGATAAAAGTGATTATTACTTTTCTATCGTCTCCATCTTTGGTGCTAAGCGCtccttgttgtgtgtttttcttttgcccTACACTTCCCTGAGATTACTTCTTTGTGTCACTGATACGGTCTtgtatttttgttcttttttgatTTTTCGGTAGGtggctttcttttctttgtttgttcaaCTGTGCAGGCtttacctcttttttttctccttcaattTTTCCTAACTAAATCCAAAACATAAAAcgcatcacttcctgtgtgccagagtctttttttttctccatccgGACTCTGTATGTTGAAACAGCGAATGAAAAGCTGTCATGATGTTAATAtgtggcatttttttttgttaatgattATTCCTTTATGGATTTATTGACAGAAAGTGATCACTTTTCATAAGATTACATCTAATTGCACAAGTCCAGCAGAGCAAAATCCTTCTACATGCATAAAATGTGTCAGGCATTACCATTTCCTAAATAACCTGTTAGCACTTAGGTCACATAATGCCAAAGCTTTTGTATTAGGTCACCTCTGGGCTCAGGTTTTATAGGACGCTCGGTTCGTCAAGCAGAACATCTCAATACAACTGATCCCTTTTTGTATCTTTAAATCACAGGTACTCTTTCTTAATTGACTGAACATTTTTGAAGCTTATGGTCCTGTACTTACCGTCAAGATAAAAAAGAGACAACAAACTGTTGATATGCAATTGTTATACATACTATATTTGTATAAATAAATCTATGTGCTTGTGTACAGTGAA

Function

GO: NA

KEGG:

id description
K19931 LIN7; protein lin-7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307400 lncRNA downstream 45724 8426737 ~ 8429906 (-) True G226658
TU307399 lncRNA downstream 48024 8426737 ~ 8427606 (-) False G226658
TU307402 lncRNA downstream 48024 8426737 ~ 8427606 (-) False G226658
TU307393 lncRNA downstream 118192 8349117 ~ 8357438 (-) True G226654
TU307394 lncRNA downstream 124456 8349702 ~ 8351174 (-) True G226655
TU307457 lncRNA upstream 299106 8809420 ~ 8814394 (-) True dram1
TU307503 lncRNA upstream 408177 8918491 ~ 8922944 (-) True G226711
TU307592 lncRNA upstream 459075 8969389 ~ 8969898 (-) True G226787
TU307604 lncRNA upstream 518732 9029046 ~ 9029370 (-) True G226797
TU307611 lncRNA upstream 527457 9037771 ~ 9039857 (-) True G226800
XM_039791438.1 mRNA downstream 72772 8343006 ~ 8402858 (-) True ppp1r12a
XM_039792437.1 mRNA downstream 142609 8260324 ~ 8333021 (-) True pawr
XM_039792433.1 mRNA downstream 225761 8028460 ~ 8249869 (-) False syt1a
XM_039791528.1 mRNA upstream 54928 8565242 ~ 8754830 (-) False ppfia2
XM_039791527.1 mRNA upstream 54928 8565242 ~ 8754830 (-) False ppfia2
XM_039791526.1 mRNA upstream 54928 8565242 ~ 8754830 (-) False ppfia2
XM_039791525.1 mRNA upstream 54928 8565242 ~ 8754830 (-) False ppfia2
XM_039791524.1 mRNA upstream 54928 8565242 ~ 8754830 (-) False ppfia2
TU307188 other downstream 584319 7888571 ~ 7891311 (-) True G226495
XR_005638120.1 other downstream 981323 7426600 ~ 7494307 (-) False LOC120553151
XR_005638119.1 other downstream 981323 7426600 ~ 7494307 (-) True LOC120553151
XR_005638121.1 other downstream 981327 7426600 ~ 7494303 (-) False LOC120553151
TU306891 other downstream 1386563 7086947 ~ 7089067 (-) False meig1
XR_005638147.1 other upstream 54928 8565242 ~ 8793910 (-) False ppfia2
XR_005638142.1 other upstream 54928 8565242 ~ 8754830 (-) False ppfia2
XR_005638144.1 other upstream 54928 8565242 ~ 8754829 (-) False ppfia2
XR_005638143.1 other upstream 54928 8565242 ~ 8754829 (-) True ppfia2
XR_005638145.1 other upstream 54928 8565242 ~ 8685938 (-) False ppfia2

Expression Profile