RNA id: XM_039792120.1


Basic Information

Item Value
RNA id XM_039792120.1
length 3921
RNA type mRNA
GC content 0.51
exon number 26
gene id osbpl8
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 22574823 ~ 22675194 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTCCACTCAAACCCATGACAGAATCGTGCAGGCGAGCTAGTCGCTAATAAGTTGAGTGAATATCGTGGTAGAAGCCATACCAGTAACTGTGAAGATCCTTTTTACCTCTCCAAACTTTAAAATTGGACATACATTACGCCGCTGGGCTGAGGAGGACCGCCAGCTGAAGCATTGACAACCTACCGTTAGTTTTACACGTTAAAACGtcgttagctaacgtcaacAGATAGCAGACAGACAAACGTCCCTGAGGACTGCCTGATTATTTACAGCCGGCGTTTTTTCTTCTGTGAGCCAGTCAGACAACCTACCGGGAGACCCTCAACGAAACAAAGAGGCTGTGTTGTGAATGTAATGGTGCTTTCTGCTACCCAAGCTACATGAGATATGCAGTCGTCAGAACAGCGCTGACAGGCCAGACTCTGGTTTAACCGAACCATGGAGTCCTCCTCAGAGTCCCAGCAGGAGCCTGAGAAAACTTTGCACCATGCAGAGTTGAGAGAGCACCATGCCACCTCCGCTGCTGTAGTGTGCGGGGATGACACCGTCCTTCTGACCCCAGGCAGGATGAGCCAGCGCCAGGCAAAGGAGCGGgacaaggagaaggagaaagagaaggaggcaGGCCTCCAAACGCCCAACAGGGAGCACGTTGCTACCCCCTCTACCCTCAGCCCGGGGGTCAGCTACACACACGgtttcgagagagggaaggaggaccTCTTGCCTCTGCCTTTGAAAGAGGACTCACATTCCATATCTAAGAGCAAGTCTGAAACAAAGCTGTACAATGGCTCAGACAAGGATGTGTCGACATCCGGAGGAAAGCTCACCAAGAAAGAGTCCCTCAAGGTGCAGAAGAAAAACTACagggaagaaaagaagagggcAACCAAAGAGCTGCTCAGCACCATCACTGATCCCTCTGTCATCGTCATGGCCGACTGGCTAAAGATCCGTGGCACTCTGAAGAGCTGGACCAAGCTGTGGTGTGTGCTGAAACCAGGTGTCCTGCTCATCTATAAAACCCACAAAAATGGCCAGTGGGTGGGAACGGTGCTGCTCAACGCCTGCGAGCTCATCGAGAGGCCCTCTAAGAAGGACGGCTTCTGCTTCAAGCTCTTCCACCCGCTGGAGCAGTCCATCTGGGCCGTGAAGGGTCCTAAAGGAGAAGCCGTTGGCTCCATCACTCAGCCATTACCCAGCAGCCACCTCATCTGCCGTGCTGCCTCTGAGTCTGATGGTCGATGTTGGATGGACGCCTTGGAGCTGGCCCTGAAGTGCTCCAGCCTGCTGAAGAGGACCATGATCCGCGAGGGGAAAGAGGACATGAGCACAGTAGCCACTGGCGGAGAACACTCCATAAATTTCTACAGCCTCCTCAGAGCCCACAACATCCATGGTTTCCAGTTCAATGACAGTGACCATTTGAAAGACCCAGACCTGTACTCAGACAAGTCAGACCGGGAGGGTGAACAGGACCACGAGGAGTCGGACCCAGAAGGCCTGGAGAAGAGTGAGGAGAGCGACAGCGACACGTCAGAGCGTCAAGACGACTCGTACCTCGACATGGACCCTAATGAACATCTGCGGGAAACCCCGTACCTGGAGCAGTCCCATGAGGAACTTGGAGAGGCTGGCGAGGCTGCCCAGACAGAGACGGTATCGGAGGAGAATAAATCTCTGATCTGGACTCTGCTGAAGCAGGTGCGACCTGGCATGGATCTGTCCAAGGTGGTGCTGCCCACCTTCATCCTGGAGCCGAGGTCCTTTCTGGACAAACTCTCTGATTACTACTACCATGCAGACTTCCTGTCAGAGGCTGCAATCGAGGAGAACGCTTACAACCGGATGAAGAAGGTGGTGAAGTGGTACATCTCTGGATTTTACAAAAAGCCAAAGGGGTTGAAGAAGCCTTATAACCCCATTATTGGAGAGACGTACCGCTGCATGTGGCTCCACCAGAAGACCAACAGCAAGACCTTCTACATCGCAGAGCAGGTATCCCATCATCCTCCTGTGTCAGCCTTCTATGTCAGCAACAGGAAGGACGGATTCTGCCTCAGTGGCAGCATCCTCGCCAAGTCCAAGTTCTATGGAAACTCTCTGTCGGCCATATTAGACGGGGAGGCTCGGCTCACTTTTCTCAACCGAGGAGAGGACTATGTGATGAACATGCCCTATGCTCACTGTAAAGGCATCCTGTACGGCACCATGACCCTGGAGCTGGGTGGTCAGGTCACCATTGCCTGTGAGAAAACGGGCTACAGTGCTCAGCTGGAGTTCAAACTGAAGCAACAGCCATTCCTGGGCAGCAGTGACAATGTCAATCAGGTCTCTGGAAAGATCAAGCTGGGAAAAGAGGTGTTGGCTACGCTAGAAGGACACTGGGACAGTGAGATCTTCATCAATGACAAGAAGACCGGGACGGTGGACACTTTCTGGAACCCGACACCAGAGCTGAGGCAGAGTCGACTGACCCGCTACACAGTCCCTCCAGAGGAGCAGGGGGAGTCTGAATCAGAAAGACTGTGGCAGCACGTGACCCGGGCCATCAACAACAAGGACCAGATCGAGGCCACCAATGAGAAGTTCATCCTGGAGGAAGCCCAGCGGAAGTCTGCCCGCGAACGGAAAGCCAAATGTGAGGAGTGGATCTCGGCCCTGTTCGAGCAGGACCCCGTCACCGGAGAGTGGCATTACAGATATGCAGACACGAGGCCATGGGATCCGCTCAACGACATGATCCAGTTTGAGAAAGACGGCTGTATCCAGACCAAGGTCCGACACCGCACCCCTATGGTACGTTCTGGCAGTCTTATTAGTCTGAGTAACCAGGGGCCGCGGAGGGACAATTGCAAATGCCAGgtgacgGTGCCAAAGAGGAAACACAAGAGCGACAAGCCCAAGAGCCCAGAGAGTGGCTGCTCTTCACCCGAACCTGACCGCCAGGACTCGTCTGGCAGCGAACGACACAAAAGCAAGCATAACAGTCGGCTGAGGAAAAAGGGAACAGACCTCAGTGAACTTCAAAGTGCCATTGAATCTATAAAGCAGACGCAGGAGGACATTAACAGgagCATCAGCGTGCTGCGGAGTCGTGCGGCAGGCCGCGTGGAAGGCGGCTCTTTCCTCCAACAGCGCGACTACGTCATCATTGTTTTCCTCATCCTCCTTCAGGTCCTGATCAACTATGTCTTCAAGTAGCAGCCATACCCCACGGAGAGGGTGATgccccttacacacacacacacacacacacacacgcacattagGCGTCACAGTGGAGGACTTAAAGACGTGAACTTTCACCTCTCAAAATAAGTGACTCCAACTCTCTTCTCCTCTGTCTGTATTAAATTCAACTACACACGTCCAGAAAAGTGGAGACTTccacacaaaaagacaaaaagagactttttttaaaacttgtttCTATTTAACCGGTCCATTCCAAAACTCTGGGGAGATCCACAGATTTCAAAGCGAAGAGGAGCAGCGACAAAGTGAAGTAGTTAGAGGTAAGATTTTGGTGTGATGAAGTCTCAACTGCCACTCTGCTGTTGCTTATTGATTTGCCTGGATGTTAAAGGCAAAGCCAGCAGCCATTTTTTAGCTGTTGTTGGTTTTAGTTTGTTTTCCGTTGGAGTTAAACTACTCTGTGATTCACATTTCACCTCAAACGACTGAGGACCTTTTAACCTGGAGACGAGTACCACAGCTCAGATGGTAAcagatttaaaagaaaagaaaaaaaaaagtttgtttttttatcgtttTGTTTCTTTGCGTGGTTTGTCCTTTGTGAATAGGGGTGTGCTTGGACCAAAAAAGcgatgaaaagggagagaaaaacaaagtggtccaaTCTatgtgacttttatttttttattatcagaTACTTTGATAACGGCTGGGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311420 lncRNA upstream 220435 22354115 ~ 22354388 (+) True G229559
TU311303 lncRNA upstream 248566 22325795 ~ 22326257 (+) True G229494
TU311302 lncRNA upstream 254295 22320266 ~ 22320528 (+) True G229493
TU311300 lncRNA upstream 281063 22293497 ~ 22293760 (+) True G229491
TU311294 lncRNA upstream 443427 22129026 ~ 22131396 (+) True G229485
XR_005638125.1 lncRNA downstream 90907 22766101 ~ 22771633 (+) True LOC120553177
TU311500 lncRNA downstream 157756 22832950 ~ 22833161 (+) True G229621
XR_005638089.1 lncRNA downstream 301279 22976473 ~ 22994911 (+) True LOC120553039
TU311539 lncRNA downstream 353645 23028839 ~ 23037327 (+) True G229645
TU311555 lncRNA downstream 428986 23104180 ~ 23186555 (+) True G229659
XM_039791287.1 mRNA upstream 40708 22514966 ~ 22534115 (+) True csrp2
XM_039791197.1 mRNA upstream 68620 22493378 ~ 22506203 (+) True e2f7
XM_039792519.1 mRNA upstream 646413 21894940 ~ 21928410 (+) True LOC120553804
XM_039792517.1 mRNA upstream 684250 21878278 ~ 21890573 (+) True LOC120553802
XM_039791175.1 mRNA upstream 697553 21870583 ~ 21877270 (+) False LOC120553094
XM_039792140.1 mRNA downstream 40234 22715428 ~ 22738016 (+) True nap1l1
XM_039792138.1 mRNA downstream 40234 22715428 ~ 22738016 (+) False nap1l1
XM_039792139.1 mRNA downstream 40234 22715428 ~ 22738016 (+) False nap1l1
XM_039792335.1 mRNA downstream 64523 22739717 ~ 22743179 (+) False phlda1
XM_039792334.1 mRNA downstream 64523 22739717 ~ 22741248 (+) False phlda1
TU311231 other upstream 706526 21867201 ~ 21868297 (+) True G229428
TU311225 other upstream 715614 21857983 ~ 21859209 (+) True G229422
TU311228 other upstream 724222 21849211 ~ 21850601 (+) True G229425
TU311226 other upstream 727803 21837922 ~ 21847020 (+) True G229423
unassigned_transcript_1526 other upstream 977945 21596768 ~ 21596878 (+) True trnal-caa_47
XR_005638197.1 other downstream 64523 22739717 ~ 22743179 (+) True phlda1
XR_005638156.1 other downstream 640229 23315423 ~ 23440663 (+) False kcnc2
XR_005638155.1 other downstream 640229 23315423 ~ 23438926 (+) False kcnc2
XR_005638157.1 other downstream 640229 23315423 ~ 23438184 (+) False kcnc2
TU311873 other downstream 1157837 23833031 ~ 23848624 (+) True adm2a

Expression Profile