RNA id: XM_039792156.1


Basic Information

Item Value
RNA id XM_039792156.1
length 3163
RNA type mRNA
GC content 0.48
exon number 14
gene id LOC120553579
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 4543173 ~ 4563272 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCCCAGTTGTCCCTAAACGCACCTCCGGTCTGCGTCAACAATCGCTCCAGTCTGtccgttttgtttgtttgacggTTGGTTTTGCACGTTACCGGGAGTAAGAAGATCCACCAGCCCGGCTGCTGTCCAAAGAGAGgtTAAAGACAGTCGGTACCTGTCGGCTGTCGCTGGGTTTCTTTTGAGTCATTCGTTCATCTGTAGACCGTCCTGTTGTTCTGATGACTGACTGAAAGCCTCCATCGATCCTCCCAGCATCTCCGTCCACAGCTGCACTAtgAGTGTATGATGTCTGAGAGCAGCTGCCATGGCCTGCAGCAGCGGACAGAGCAATGCCGAAACTCTGGAGGGGTTCCATGAGGTGAACTTGGCCTCACCCACCACACCTGACCTTCAGAACCAAGCTGAGCAGCGCCCCCCCGCCCAACAGCAGAGTGCCCCGCCCACCTCTCTGTACCGCACCCACTCTCTGGGAGCGCACCCTAGTGGCCGCCCCACCTCACTGCGGGCCGACCAGCTCCCCACGCAGCCAGTGTACTCCACACCACGGCACAGCCACAATGGAAGTGTGCCAGGCCAGGAGGCGGAGTCAACCGAGGGCAACTTCCTGTCCGCAGAGGATGGCGAGGAGTGCAGCGCTCTGAGCGACAGCCTGTCGCGGCTGCGCAGCCCGTCTGTTATGGAGGTCCGAGAGAAAGGAAGCGAGAAGCTGAAGGAGGAGCTGGCCAAGGCCCAGAGGgagCTGCTGTTAAAGGATGAGGAGTGTGAGAGGTTGTCTAAAGTCAGAGACCAGCTCGGCCAGGAGCTGgaggagctcaccgccagtctCTTCCAGgaGGCCCACAAAATGGTCAGAGAAGCCAACGTCAAACAGGCGAATGCTGAAAAACAACTGAAGGAAGCCCTGGGAAAGattgACGTCCTCCAGGCGGAGGTCCAGGCCCTGAAGACACTGGTGCTCTCCTCCCCCACCTCCCCGCTGGGTGAACTGCCCTCTGCGGGAGCCGGGGGGAAGACTCCCTTCAGGAAGGGCCACAGCAGGAACAAGAGCACCTCCTCGGCCATCATGGGGACGCAGCCCGACCCGTCGGCCACGCAGCCCATCGTGCGGGAGTGTAGAGAGGTGGACAGTCAGCTGTTCAGCGACTTCAAGGCGTGGAAGGAGGAGCCGACGCTCGACCGGGGCTGCTGCTTCCTGGAGAGAGTTTACCGTGAGGACATCTACCCCTGCCTCACCTTCAGCAAGAGCGAGGCTCACTGTCCTCACCTGCTCTCTACTCAGCTCGGTTCGGCCATCTTGGAAGCTGTGGAGCAGAACACGCTCAGTGTGGAGCCGGTCGGTTTCCAGCCGCTGCCCGTGGTCAAAGCCTCGGCGGTGGAGTGTGGAGGACCAAATGGGCGAAGGGCTGAGCTCGTCACAAAATGTGCCCTGAGCGGTCAGACCAAAACCTGTAAGCACAGAATCAAGTTTGGAGATTCGTCCAACTATTACTACGTGTCTCCGTACTGTAGATATAGAATCACAGCAGTGTGTAATTTCTTCACCTACATTCGCTACATCCACCAAGGGCTGGTCAAACAGCAGGATGCGGAGCAGATATTCTGGGAGGTGATGCAGCTACGGAGGGAAATGTCCTTCGCCAAGCTTGGCTACTACAAAGACCAGCTGTGACCGATGGACAGCCCCGCCCTCCAATCACAGCCAACTGCGCCCCGAATCCCCGCCCCCTTCCTGGTCCTGGTTTTCCCTCATCCTGTCatttccctccatccctccctccctcctttgtgcgagtgtgtttttgtgtgtgaaagagaataACTGTGGTTGTTTTCaatcaccacaaaaaaaaaaagacgtccGTGGTCTGTTGTCGTTACTGATCTGGAGTTTTTATGGGTTTCTGTTGAGAAtccaaaatatttttcttttattgaaacATGTAACACTCCCATTATATGAATTATTGTTAATATATGAAGACAACTGGCTTTGTTCCCCTCCCcctctaaaaataaaacatacaaaaacccTTTAATTGTTAAATCAGAGTTTAACAGGGCTGAAACAAGTCATTTGAATTCTTCAGTTACAAATGGAGACAACTTTCTGGACATATGATGGAGAATTAGAGCCACTCTTCTGAGATTTAGAGAATATTTAGAAATAAGTTGTAGTGTTGggaaaataaagtcataaaacaaaaatgtataaccTTTCAAACATTATTTAAACAATCTAAAATATTACAACTATTCTAGAAATCCCCGATATATTTTCCTAACAGTGGCCCTGTTGCTCCGTCGTAGTGGCACAAGTAACTAAAACCTGTTAAACAGTGCTGCTAAATGACCAAACAATCAATTATTGTGAAACTGTATAAGCTGACATTGAATTTATGTTGTAGAAAATGATAAAGGCAGTATGTGAAATGTAAAGAAATATGTGCAAAGATAATCAGAAGATCACCCATTCAGACTGGATAGTAATAATTACAGCTGGAATGACGACCTGTTTTTCTGCAAACTTGTTGGTCCGCCTTTTAATTTCTTGAATTATAATgtttctttgcctcccctttaAATCTCTGCCACCCTGGAGGCTTTTGGCTTACTACTGCTGAATTACAACCGAGCACAGTGAATAATTCCCCACCTCCCCCTGTAATGTTTAACCTGTCTGAATGGGGCTTAAAAAGTCTTTTCAGCATTATAAAGTTTGTCTCTGTATGAcagaaaatgttatttataaTTACTTTAATAATTTATGACCATTATTTGACGGTTATTTTGTTGTCGGTGTGGTTTCAGACGGTAAAGCTTCAGTTGGAAAAATGAAATTGACATTTTACTGCTGTTAAACACTACATGATGTTCTGGCCTCTTTTACATACTTTGACAAACAAATTtgctgtgtgtattttcattttcctggTGTTTTCAGCCTGCTGTATttaatcaatcaggaaatgtgTAGATAATAAGCTGTGTGTGGGGGAGTGTGTTTGTATGCCTGGTGTTGTGTAAACTTTCATGTATGTTAATTTAAACCTGATTCCTCTGCATCTCCCTCTCTGTCATTCATAGTCATTGTCACTTTCCCGGTTTGGTTTAGTGCCTTTTCTCTCAGAcactctgaaataaaaacagtaataCCTCTGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306323 lncRNA upstream 53103 4489680 ~ 4490070 (+) True G225847
TU306316 lncRNA upstream 68046 4473611 ~ 4475127 (+) False G225842
TU306315 lncRNA upstream 68158 4473611 ~ 4475015 (+) True G225842
TU306265 lncRNA upstream 89741 4450060 ~ 4453432 (+) True G225802
TU306270 lncRNA upstream 233785 4309107 ~ 4309388 (+) True G225807
TU306387 lncRNA downstream 89695 4652967 ~ 4653360 (+) True G225891
TU306388 lncRNA downstream 93223 4656495 ~ 4656819 (+) True G225892
TU306391 lncRNA downstream 94912 4658184 ~ 4658631 (+) True G225895
TU306397 lncRNA downstream 145591 4708863 ~ 4709269 (+) True G225901
TU306440 lncRNA downstream 174063 4737335 ~ 4738306 (+) True G225935
XM_039791692.1 mRNA upstream 20559 4495890 ~ 4522614 (+) False upf2
XM_039791693.1 mRNA upstream 20559 4495890 ~ 4522614 (+) False upf2
XM_039791694.1 mRNA upstream 20559 4495890 ~ 4522614 (+) False upf2
XM_039791695.1 mRNA upstream 22819 4495890 ~ 4520354 (+) True upf2
XM_039792070.1 mRNA upstream 50286 4483461 ~ 4492887 (+) True slc35e3
XM_039791696.1 mRNA downstream 27438 4590710 ~ 4594142 (+) True kics2
XM_039791702.1 mRNA downstream 125655 4688927 ~ 4696183 (+) True LOC120553359
XM_039792032.1 mRNA downstream 170990 4734262 ~ 4749242 (+) True dmtf1
XM_039791119.1 mRNA downstream 230015 4793287 ~ 4804242 (+) True LOC120553055
XM_039791066.1 mRNA downstream 671878 5235150 ~ 5238344 (+) True LOC120553019
unassigned_transcript_1479 other upstream 346358 4196705 ~ 4196815 (+) True trnal-caa_19
unassigned_transcript_1478 other upstream 349261 4193802 ~ 4193912 (+) True trnal-caa_18
unassigned_transcript_1477 other upstream 352387 4190676 ~ 4190786 (+) True trnal-caa_17
unassigned_transcript_1476 other upstream 352834 4190229 ~ 4190339 (+) True trnal-caa_16
unassigned_transcript_1475 other upstream 354445 4188618 ~ 4188728 (+) True trnal-caa_15
TU306390 other downstream 94172 4657444 ~ 4657969 (+) True G225894
XR_005638175.1 other downstream 720487 5283759 ~ 5373203 (+) False abcc9
XR_005638176.1 other downstream 720487 5283759 ~ 5373203 (+) False abcc9
XR_005638177.1 other downstream 720487 5283759 ~ 5373203 (+) False abcc9
unassigned_transcript_1480 other downstream 2583997 7147269 ~ 7147340 (+) True trnaw-cca_35

Expression Profile