RNA id: XM_039792167.1


Basic Information

Item Value
RNA id XM_039792167.1
length 4172
RNA type mRNA
GC content 0.52
exon number 23
gene id scube1
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 24869947 ~ 24992165 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCTGgtatcagagacacacacgcgcacacactacacacccacccacccacacacacacacacagtccaaaCCCCCAGAAAAGCCCTGCTGAATCCTCACACCGTCTGTCAGCATGGGGAGCGCTTGTTTTTCCCGGGACGTTTGTTTGTTTATCGTCCTCATAAATACTTGCAGGGTGATGGGGAATGTCGGACCCGCAGACGCAGATGAGTGTGCAGAAGGTTCGGACGACTGCCACATCGACGCCCTCTGCCAGAACACGCCCAAGTCCTACAACTGCATCTGCAAGCCGGGCTACAAGGGAGATGGAAGGCAATGTGAAGACATGGACGAGTGTGAGAATGACTACAACGGAGGCTGTGTCCATGAATGTATCAACATACCTGGCAACTACAGGTGCACCTGCTACGATGGATTCATGCTGGCCCACGACGGACACAACTGTCAGGATGTGGACGAGTGTGTGGACAACAACGGCGGATGCCAGCAAGTGTGTGTCAACACCATGGGGAGCTACGAGTGCCAGTGCACAGACAGCTTCTTCCTCAGCGACAACCAGCATACCTGCATCCACCGCTCCGATGATGGGATGAACTGCATGAACAAGGACCACGGCTGTGCCCACATCTGCAGAGAAGCTCCGGGCAAAGGCGGGGTGTCGTGCGAGTGCCGTCCTGGCTTTGAGCTGGCCAAAGACCATAAAGACTGTACATTGACATGCAACTATGGAAACGGCGGTTGCCAGCACACATGTGATGACACAGACACAGGGCCGGTGTGTGGCTGCCACCAGAAGTACGCCCTGCACACAGACAGCAAGACCTGCATCGAGAAAGATGAGGCTGCAATTGAGAGCTCTGAGTTCAATGCCACGTCAGTAGCTGATGTGGACAAGCGGGTGAAACGGCGGCTACTTATGGAGACCTGTGCCGTCAACAACGGCGGCTGCGACAGGACATGTAAAGACACGGCCACAGGGGTGCGCTGCAGCTGCCCCGTGGGATTCACTCTGCAGCCTGATGGCAAAACCTGCAAAGACATCGACGAATGCCAGGAGAACAACGGGGGCTGCGATCACTTCTGCCGGAACACAGTGGGATCCTTCGAATGCAGCTGCCAGAAAGGCCACAAACTGCTCACTGATGAACGGACATGCGAAGACATCGACGAGTGCTCCTTTGAGAGAACCTGCGACCACACCTGCGTCAACTACCCTGGCAGCTTTGAGTGCCTGTGCAAAAAGGGCTACATCCTGTACGGCCTCACTCACTGTGGAGACATTGATGAGTGCAGCATCAGTAACGGGAGCTGTGAGAACGGCTGCATAAACACCCAGGGAGGCTacgagtgtgtgtgtccacctGGGCAGAAACTCCACTGGAACAAGAAAGATTGCATCGAGGCAGTGAAGTGTCTGCCCAATGGGAAGCCAGCACCCCGAGCCCAGCTGACGTGCAACAAGAGTGGAGGGGCAGAGGTCTGCTCGCTCTCCTGCCCCTCCAACGCCCTCTTCCttgcagACTCAGAGAACAGCTACACACTGAGCTGCGGAGTGCCTGTCCAGCCTGGGAAAGCTCCTCAGAAGAGGAATGCCACCACTGCATTACCTACATGTGCCGACACACTGGCCCCACCCATCAAACAGAAGGCCAGGTTCAAGATCAAAGACGCCAAGTGTCACCTGAGGCCCCGCAAcaaggagaaacacagagatTCATCCAAGCAGAATCTGCAAGGAGGCCAGTTCCCCTGTACCGACGACTGCCAGGTAACTTTTGTCAACCTCAAGTGCGATTCGTCTAAGAAGCGCAGACGAGGACGCAAATCTCCTTCCAAAGAGGTTTCCCACATCACAGCTGAGTTTGAGATGGAGATGAAGGAGGAAGAAGCTTCAGACACGTGTAATGTGGACTGCGTGCGGGAAAAGATGAAGCAGAAGCTGCAGAGCACCATGCGGACGCTCAGGAAGTCCATCAACAAACAGCAGTTTTACATCCAGTTCTTTGGGACGGAGTACGAGGTGGCCCAGAAACCGTCCAGGGTACCAGAGGGAGCCGAGGCTTGCAGCACGGGCCAAGTCCTCCGAGATGGAAAGTGTGTGAGCTGTGGTGCGGGGACGTTCTACAGCGGGGAGCAGGAGCAGTGTGTCCAGTGTCCTCCCGGTACCTACCAAGACATGGTGGGTCAGCTGTCCTGTGAGCCATGTCCCAGCACTGAAGGACAGGGCATCGTTGGCGCCAAGAACGTGTCTCAATGTGGAGGTCAGTGTACAGCAGGTCACTTCTCTGCTGACGGGTTCCGTCCATGCCAGCCCTGTGCGCTGGGTTCCTACCAGCCAGAACCTGGCCGAGTCCTCTGCTTCCCCTGTGGAGGAGGTCTCATGACCAAGTATGAAGGATCAGTGTCCTTCAGGGACTGTGAGGCCAAAGTGCACTGTGCTCCTGGACACTACTACAACTCCAGCACCCATCGCTGTATCCGCTGCCCAGCAAGAACCTACCAGTCTGAGTTTGGGCAGAACTACTGTATCACTTGCCCGGGGAACACCACCACTGACTTTGACGGTGCCACCAACGTGTCTCACTGCAAAAACCAGCTGTGTGGAGGCGAGCTGGGAGAATACACAGGCTACATTGAGTCTCCTAACTACCCTGGAGATTACCCATCCAACGTGGACTGCGTCTGGACCATCAACCCACCACACAAGAGGCGGATTCTCATCGTGGTACCAGAGATCTTCCTCCCCATCGAGGATGAGTGCGGCGACGTGCTGGTCATGAGGAAGAGTGCCCTTCCCACATCCATTACCACCTATGAGACGTGTCAGACCTATGAGCGGCCCATCGCCTTCACCTCTCGCTCTCGCAAGCTCTGGATTCAGTTTAAGTCCAACGAGGGCAACAGTGGCAAAGGGTTCCAAGTTCCATACGTCACCTATGACGAGGACTACCAGCAGCTGATAGAGGACATAGTGCGAGATGGCAGGCTCTACGCTTCTGAGAACCACCAGGAGATACTAAAGGACAAGAAGCTGATAAAGGCCCTGTTCGACGTGCTGGCCCATCCCCAGAACTACTTCAGGTACACGGCACAGGAGTCCAAAGAGATGTTCCCTCGCTCCTTCATCAAGCTGCTGCGCTCCAAAGTCACCAGGTTCCTAAGGCCGTACAAATAGACGGGGCCTCTCCATTGTCCTGTTAAATCCAGCAACCTAaatgtaaccccccccccctccgctTTGTCTACTTCTAAGTTTTTGGATCCGTTTTATGACTACACATTTTTCCTCAATCCTCACATGCTGCCTTTCCTCCTCTTTGACCCCTTTAAGTAGTAACACATCACTAACTGACACCCTTCCCTCTAGCTACTGCAGCTTTCTTTTTCTGTAAGGTTTGACCGATATGGGTTTTTGCAGGCCagtattaatatttttataacaAAGCAGAAGATGCctgatatatattgtgtgtatatattgtttcCTTAAATTTGACCATTTAATACCAAACACGTATGGAGTATTGAGGGTTTTTCCTCAGTTTGGTACGGTAAGATTAAGCAGCTCCTTAAGGCAGGGTGGCCCTGCATGCCAGTGAAGGTGCAATATCTGCAATACTGGTGGTGCATGTTCTAATTGAATATTGAATACTGAATTGAGTATTTACATATGGACTTAGACTCAGCATAGCAAACCTTCACATCCTTTGTCTGAGGTTGGTTTCAGTaacaagcagtggtggaatgtaactaagtacatttactcaagtactgtacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaggggaggaGACACAGggaaagacagacagggaaacaaacaggaaacacaggGGAATCCAGAGGTCACAGACTGGGCTGTGACAGCTTTACctaagtcttttcttttcatgccattttctacttctactccgctacatttcagagagaaatgttgtactttttactccactacattcatctgacagctttagttgctAGTTAAGACACAAGTTAACACATTAagatttattataaatgaaactacccaacaatatacaggcctacaagtccagctgaaatgattagaccattaaacacttagttgactgacagaactgtttggatcgt

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K24468 SCUBE1_3; signal peptide, CUB and EGF-like domain-containing protein 1/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312222 lncRNA upstream 71206 24795953 ~ 24798741 (+) True G230192
TU312111 lncRNA upstream 384430 24482310 ~ 24485517 (+) True G230109
TU311993 lncRNA upstream 605882 24260059 ~ 24264065 (+) True G230011
TU311974 lncRNA upstream 753826 24112965 ~ 24116121 (+) True G229994
TU311959 lncRNA upstream 774782 24088025 ~ 24095165 (+) False LOC120553514
TU312293 lncRNA downstream 192647 25184812 ~ 25191943 (+) True G230249
TU312317 lncRNA downstream 359712 25351877 ~ 25352174 (+) True G230260
TU312312 lncRNA downstream 370734 25362899 ~ 25373424 (+) False LOC120553523
TU312316 lncRNA downstream 384182 25376347 ~ 25377601 (+) True G230259
TU312409 lncRNA downstream 443986 25436151 ~ 25494197 (+) False G230327
XM_039791230.1 mRNA upstream 34202 24830198 ~ 24835745 (+) True LOC120553142
XM_039791730.1 mRNA upstream 81194 24773501 ~ 24788753 (+) True LOC120553386
XM_039791731.1 mRNA upstream 120119 24732196 ~ 24749828 (+) True LOC120553387
XM_039791728.1 mRNA upstream 234682 24620865 ~ 24635265 (+) True LOC120553385
XM_039791095.1 mRNA upstream 265000 24597350 ~ 24604947 (+) True LOC120553040
XM_039792315.1 mRNA downstream 19069 25011234 ~ 25110425 (+) False mpped1
XM_039792316.1 mRNA downstream 27211 25019376 ~ 25113193 (+) True mpped1
XM_039792325.1 mRNA downstream 226375 25218540 ~ 25241938 (+) True pnpla3
XM_039792326.1 mRNA downstream 252372 25244537 ~ 25260350 (+) True LOC120553672
XM_039791863.1 mRNA downstream 271831 25263996 ~ 25349341 (+) False ttll12
TU312157 other upstream 91689 24620812 ~ 24778258 (+) True G230148
TU312075 other upstream 557009 24309936 ~ 24312938 (+) False LOC120553083
unassigned_transcript_1527 other upstream 982523 23887337 ~ 23887424 (+) True trnay-gua_62
TU311875 other upstream 1021323 23833031 ~ 23848624 (+) False adm2a
TU312620 other downstream 1046122 26038287 ~ 26046681 (+) False arhgef39
TU312731 other downstream 1380571 26372736 ~ 26381109 (+) True mrps33
TU312732 other downstream 1380571 26372736 ~ 26381109 (+) False mrps33
XR_005638128.1 other downstream 2076912 27069077 ~ 27072552 (+) False LOC120553194
TU313012 other downstream 2610840 27603005 ~ 27603702 (+) True G230842

Expression Profile