RNA id: XM_039792170.1


Basic Information

Item Value
RNA id XM_039792170.1
length 2945
RNA type mRNA
GC content 0.44
exon number 8
gene id chpt1
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 8848028 ~ 8861359 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCCTGCCGAGACGCAACTCGTTCAGAAATGTGAGTATCGACATCTCATGGGTTCCGCTGTGGAAATGGCCTCTCGTCTAGTCACCCACCTATAAATGCCAAATGAGCTGCTGTTTTTTGGAGTCGGCCGAAAGAAGATAGCCCCGTCTGAACCACTACCCGGGAGTATTGGGAAGTTCGTTACGGTAATTCGAGGAGTGACTAGGCAGAAAAACAATGCCACATTTCCTGTGGCCAGAACCGCTGTCACCTGCACAACTCAAGCGGTTGGAGGAGCACAAATACAGCGCCTCCGGTCGATCCCTGTTTGAGCCACCGTGTCAAATCTACTGGAACTGGCTCGTCCAGCAAACTCCGATATGGATTGCACCAAACACTCTGACTATTGTTGGACTGCTGGTCAATATCCTCACCACGGTGGTGCTTGTGTATTATTGTCCCACTGCAACAGAGGAGGCTCCAGCATGGGCCTTCATCATGAGTGCTCTGGGTCTGTTCATCTACCAGTCTCTGGACGCCATTGACGGGAAGCAGGCCAGGAGGACAAACACCAGCTCAGCTCTGGGGGAGCTCTTCGACCACGGCTGCGATGCTGTCTCCACAGTCTTCGTTGCTGTGGGAACATGCATTTCGTGCGGAATAGGAAGACTCCCCGACTGGATTTTCTTCTGCGGTTTTATCGGGATGTTCATGTTCTTCTGCGCCCACTGGCAGACCTACGTGTCCGGGACCCTCCGCTTTGGCTTGATTGACGTCACAGAGGTGCAGATCGCCATCACGATCATGTATGTGATGTCGGCTTTTGGAGGCGTGAGCCTTTGGCAAAGCACGTTGCCCATCATTGGACTGAAGCTGTACGTCTTCCCTATCATTGGCATCATCGGCGGGGCCCTCTACTCCTGCTACAACTACTTCTATGTCATTTTGAATGGAGGCGTTGGCAAAAACGGCTCAACTGTGGCTGACACCAGTGTGCTGAGTCCTGGTTTGCACGTCGGCCTCATCCTCACCTTGGCCTTCATCATTTTCAAGAAGTCGTCCAGCCAGCTGTTTGAGCTCCACCCCTGTCTGTACCTGCTCACCTTTGGCATGGTCATGGCCAAGATCTCCAACAAGCTCGTGGTCGCACACATGACCAAGAGTGAGTTGCACCTCCCAGACACGGCCTTCATAGGCCccggcctcctcttcctcaaccAGTACTTCAACAGCTTCATCGATGAGCACATAGTCCTCTGGATCGCCATGGTCTTCTCTCTTCTGGATCTAACGCGCTACTGTACGGGCGTGTGCCTCCAGATCGCCTCCCACCTGCGCATCCGAGTCTTCAGCATCACGCCACCGAGCCACGGCCACCGCGACTGAAGGCTTGCCCGGCGGGAGGAGGCGGGGGGGGACGCAGACCTCTCCCCGCTCCTGAAAGCAGACGATGACGAGGAGAGACCCTCCTCAACCCCGAGCCACTGCAGCCTTGACAAAGTGACCACTTCTGATTAAAACTGCCTCTCACACAAGatggaaaaatacaaaaaaaaaaactctaaactataaaccaaaccaaaacaaaaaaaggaagaaaaaaagttttgaaaagCATGGATCTATTGAATGGGGAAATTCCCTTGAATTCCTCATTGGCTGTTGTAGCCAATACGTTTTAATTTAGACATCATTGCATGTTGTCAGAAAATAGTTTAGATTTTTACATCTACTTCCTGCTTATTCAACTCAAATACCAAAATGTTTTCTTCAACGGGTACTTTATAATTTGGGCAAATATCAGAGCATTTTTATCCGCTTTAAATTTACAGACGTGTTTCCAACATGTGGGATTCTCATATAATTAAGATGCCTAAATATATGACAGTCCTAACTCCTAACTGCTCAATAAGGTGAATCTCTTTAATATATGCCCAAATTTAACCTGTTGAAAGTTCTCttaatcattttgtttttatttattaaatgaatGTGACCCAATCTGACATGAATCGGGGCTTGAAAATGCAGATTCAAATTTTTTTAGATGACCTTTAAAACCTCAAATAATTCCCAATGAATTTTTGCAATGTGGACTGGCAAGTTGTCAACGCGCGACGTGACGGGGGTAACGGTCTGTGTTAGTGCTGAAAAACGACGACTGGATTTCTATCGGGCTTCTCTTACAAATAACTTTCTATTTATATTCTTATTCTCTGTTCTTCATCTCATCCGACAGtcctggaaaaataaaaaataaacacctcAACTCTGGCCTTTTTAGAGCGCCGTCGACTGATGAAGCATTAACACATGACTTGTTCTGCTTTCTCTGTTCTTCTCCCTGAAGGGCTAATAGTTAATTATTTGTGATTGTACAGAATTCTACTGAAAAACGCcttaagtatttttgttgtaattaCTGTTTAACTTGTGAATATTTAAAACAGCtttgtatgttgttttttgtttttttttgggttttccaCTACAGTCATCAAACCAGATGCAACAATAGGAATAATACAATGCTACTGGAACTGTTCACTCATAACGTTTCTTCACTTATACAAATGTATATTATGTAAAGGTGAGCGATTCATTTGGTTCTTGAAGAGTTGTTGGATTACCAATTGTCATCTGACTGACTCATTATTCAGGTTTCATTTGGATCAAAAGGGATATTTCTGTAGTGCCGGTAAACTATTATAAGGGTAAAAGACAAGTGTACTCTtgaattttatttggaaaaataaaatgatcttCCTCTTAGGAAATTAAAGAGGAGGCATGTCCTAAAAATGATTTCTTTTTGATTTATGATGGACTTTGGAACTATGCATTGACATGTACAAACTTGATTTCAACATCATGTTGCACTGTTCAATAATCCAGTTAAACACATTTGTACTAACAGATAATGTCTGAGTGGAAAAAAATTgtaataaagaaaatatttttcatGC

Function

GO:

id name namespace
GO:0008654 phospholipid biosynthetic process biological_process
GO:0016020 membrane cellular_component
GO:0016780 phosphotransferase activity, for other substituted phosphate groups molecular_function

KEGG:

id description
K00994 CHPT1, CPT1; diacylglycerol cholinephosphotransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307457 lncRNA downstream 33634 8809420 ~ 8814394 (-) True dram1
TU307400 lncRNA downstream 418122 8426737 ~ 8429906 (-) True G226658
TU307399 lncRNA downstream 420422 8426737 ~ 8427606 (-) False G226658
TU307402 lncRNA downstream 420422 8426737 ~ 8427606 (-) False G226658
TU307393 lncRNA downstream 490590 8349117 ~ 8357438 (-) True G226654
TU307503 lncRNA upstream 57132 8918491 ~ 8922944 (-) True G226711
TU307592 lncRNA upstream 108030 8969389 ~ 8969898 (-) True G226787
TU307604 lncRNA upstream 167687 9029046 ~ 9029370 (-) True G226797
TU307611 lncRNA upstream 176412 9037771 ~ 9039857 (-) True G226800
TU307615 lncRNA upstream 255451 9116810 ~ 9119971 (-) True G226803
XM_039791537.1 mRNA downstream 33588 8809393 ~ 8814440 (-) False dram1
XM_039791535.1 mRNA downstream 33589 8809393 ~ 8814439 (-) False dram1
XM_039791530.1 mRNA downstream 45969 8795894 ~ 8802059 (-) True si:zfos-932h1.3
XM_039791531.1 mRNA downstream 46906 8795894 ~ 8801122 (-) False si:zfos-932h1.3
XM_039791526.1 mRNA downstream 93198 8565242 ~ 8754830 (-) False ppfia2
XM_039791964.1 mRNA upstream 1023 8862382 ~ 8896543 (-) False mybpc1
XM_039791963.1 mRNA upstream 1023 8862382 ~ 8896543 (-) False mybpc1
XM_039791962.1 mRNA upstream 1023 8862382 ~ 8896543 (-) False mybpc1
XM_039791961.1 mRNA upstream 1023 8862382 ~ 8896543 (-) False mybpc1
XM_039791960.1 mRNA upstream 1023 8862382 ~ 8896543 (-) False mybpc1
XR_005638147.1 other downstream 54118 8565242 ~ 8793910 (-) False ppfia2
XR_005638146.1 other downstream 93196 8572959 ~ 8754832 (-) False ppfia2
XR_005638142.1 other downstream 93198 8565242 ~ 8754830 (-) False ppfia2
XR_005638144.1 other downstream 93199 8565242 ~ 8754829 (-) False ppfia2
XR_005638143.1 other downstream 93199 8565242 ~ 8754829 (-) True ppfia2
unassigned_transcript_1484 other upstream 1334425 10195784 ~ 10195870 (-) True trnay-gua_60
unassigned_transcript_1485 other upstream 1334988 10196347 ~ 10196433 (-) True trnay-gua_61
TU308019 other upstream 1652135 10513494 ~ 10522962 (-) True G227082
TU308180 other upstream 2118839 10980198 ~ 10981259 (-) True G227197
XR_005638189.1 other upstream 2762650 11624009 ~ 11676832 (-) False pcloa

Expression Profile