RNA id: XM_039792180.1



Basic Information


Item Value
RNA id XM_039792180.1
length 1225
RNA type mRNA
GC content 0.52
exon number 6
gene id LOC120553593
representative True

Chromosome Information


Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 28149732 ~ 28293546 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CCACCTCTTCCTTCTGATCCAGTGCCATGAATCAGCCTGGACAACAGCTGTTACCCACATAGAGGTCACTTTACCTCTCTTTCCATTACTTCAGTCCAGAGGATGCTGGGAATGTGTCGTGGGCGCAGGAAGTTCCTGGCGGCCTCTCTCGCTTTGCTCTTCATCCCAGCACTCACCTGGCTTTACCTGTCAGTCGGAAGCTTTCAAGAAAAAAATCCCTGTTCCTGCCCCACAGTGAAGCCCCTCCCCCTGTCTCCATTGGAAGTTCAATCATCAACGCCAGTGGGCGCAGCTGGCGAGCGGCAGGCCTTAGAGCTACGAGTCCGGGCAGTGGAGGAAGAGAACCGGGCACTGCGCCGTGAGCTGAGCCGGCCACCCAGGAGCCCATCCGCACGCCTTCCAAACGCTGGTCACCGTGGCAACCAAAGCCGAACCCATTCAGAGGAAGGCACCGGCGACAATGAGGGCCAGAAAGCTGCTGCAGTGGGAAACAGCTCAGACTGTGTGCAGTTACCAGTGGTGGATAAGTGTGAGACCATCCACGTGGCGATCGTTTGTGCAGGTTACAACGCCAGTCGAGACGTGGTGACACTGGTTAAATCTGTCCTTTTCCACAGcttgtgtttgtgtgtgtgtgtccacaggcGGAACCCACTACATTTCCATTTCATCACAGACTCCATTGCTCAGCAGATCCTGTCCTCTCTGTTCCATACCTGGATGGTCCCTGCCGTCAAGGTTGACTTCTATGATGCAGATGAGTTGAAGTCTGAGGTGTCATGGATTCCCAACAAACATTACTCTGGAATCTACGGCCTGATGAAGCTGGTACTCACTAAGACGCTACCGTCCGACCTGCAGAGAGTCATCGTCCTGGACACAGACATCACATTTGCCACTGACATCGCTGAACTCTGGGCTGTCTTCCACAAGTTCAAAGGTCAGCAGGTTCTTGGTCTGGTGGAGAACCAGAGTGACTGGTACCTGGGGAACCTGTGGAAGAACCATCGACCCTGGCCGGCTCTGAGCAGAGGCTTCAACACTGGTGAGGTTTGACAGGAGGACgtcatatatgcatatatgcatTCTTATATTAAAGAAAATCAGTATGCATGCTGATTATTGAGATTGCTGCAAAATATTATAACCTATCCGTATagctacgggccctcagagtgtggatgaaCCTATCATCTACagttccatggagagaaatagagcaaaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU313185 lncRNA upstream 34296 28115187 ~ 28115436 (+) True G230991
TU313183 lncRNA upstream 44485 28105041 ~ 28105247 (+) True G230989
TU313181 lncRNA upstream 45813 28103676 ~ 28103919 (+) True G230987
TU313179 lncRNA upstream 60836 28088361 ~ 28088896 (+) True G230985
TU313177 lncRNA upstream 61516 28087495 ~ 28088216 (+) True G230983
TU313212 lncRNA downstream 9921 28303467 ~ 28303840 (+) True G231017
TU313214 lncRNA downstream 43435 28336981 ~ 28337998 (+) True G231019
TU313215 lncRNA downstream 50222 28343768 ~ 28343971 (+) True G231020
TU313216 lncRNA downstream 57483 28351029 ~ 28351443 (+) True G231021
TU313217 lncRNA downstream 60547 28354093 ~ 28354305 (+) True G231022
XM_039791037.1 mRNA upstream 126114 28016843 ~ 28023618 (+) True LOC120552999
XM_039791439.1 mRNA upstream 190334 27849737 ~ 27959398 (+) True LOC120553234
XM_039791441.1 mRNA upstream 190334 27866663 ~ 27959398 (+) False LOC120553234
XM_039791440.1 mRNA upstream 190334 27913712 ~ 27959398 (+) False LOC120553234
XM_039791033.1 mRNA upstream 453015 27695624 ~ 27696717 (+) True kiss2
XM_039792477.1 mRNA downstream 323709 28617255 ~ 28630012 (+) True LOC120553776
XM_039791124.1 mRNA downstream 797411 29090957 ~ 29099400 (+) True LOC120553059
XM_039791125.1 mRNA downstream 797436 29090982 ~ 29099400 (+) False LOC120553059
TU313169 other upstream 91514 28057731 ~ 28058218 (+) True G230975
TU313087 other upstream 202259 27941321 ~ 27947473 (+) True G230904
TU313012 other upstream 546030 27603005 ~ 27603702 (+) True G230842
XR_005638128.1 other upstream 1077180 27069077 ~ 27072552 (+) False LOC120553194
TU312731 other upstream 1768623 26372736 ~ 26381109 (+) True mrps33
unassigned_transcript_1530 other downstream 177260 28470806 ~ 28470878 (+) True trnat-ugu_41
unassigned_transcript_1531 other downstream 177560 28471106 ~ 28471178 (+) True trnak-uuu_24
XR_005638234.1 other downstream 207688 28501234 ~ 28501419 (+) True LOC120553833
XR_005638238.1 other downstream 286941 28580487 ~ 28580602 (+) True LOC120553840
TU313309 other downstream 319009 28612555 ~ 28620865 (+) False LOC120553776

Expression Profile