RNA id: XM_039792212.1


Basic Information

Item Value
RNA id XM_039792212.1
length 3449
RNA type mRNA
GC content 0.53
exon number 18
gene id kdm7aa
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 9243404 ~ 9266246 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCATTCCTGCGTTGTTTAGGGACACTAGGAAGATGGCGGCGGCCCCGCTGTACTGTGTCTGCCGGCAGCCCTACGATGTAAGCCGGTTTATGATCGAGTGCGACATCTGTAAAGACTGGTTTCACGGCAGCTGTGTGCAGGTAGAAGAGCATCATGCTGTGGATATCGACGTTTACCACTGTCCCAACTGTGATGTCGTACACGGACCCTCCCAGATGAAAAAGCGCAACAATGGCCACAGGCACGACTACACAGAACCAGACGATGGATCGAAGCCGGTGCAGGCTGGCACTCGAGTGTTTGTCCAGGAGCTCCAGAACAGGACCTTCGCCAGTGGTGAGGAGATCATGATGCACATGAAGGGCGAGCAGGTGACAACCAGGTACCTGGAGAGGCACGGCTTCAACTACCCCATAGCGGTCACAGAGATGGAGGGCCTGGGACTCAAACTACCAGTCTCTACTTTCTCTGTCAAAGATGTGGAGCAGTATGTCGGTGGCGACAAAATCATCGATGTGATAGATGTGGCACGGCAGGCGGACAGCAAGATGAAGCTCAGCGAGTTTATCAAGTATTACACCAACCCACATCGACCCAAAGTCCTCAACCTCATCAGCCTGGAGTTCTCTGACACTAAGATGTCAGAGTTGGTGGAGGTTCCTGACGTGGCTCGTAAGATGTCCTGGGTAGAGAACTACTGGCCGGACGACTCCTTCTTCCCCAAGCCCTTTGTCCAGAAGTACTGTCTTATGGGGGTTAAGGACAGCTACACAGATTTCCACATAGACTTCGGAGGCACCTCTGTCTGGTACCATGTTCTCTGGGGTGAGAAGATCTTCTACTTGATCAAGCCCACTCTCGCCAACCTTGCACTATATGAGGCATGGAGCTCCTCGCCCAATCAGAGCGAATTGTTCTTTGGGGACAAAGTGGAGAAGTGCTACAAGTGTGTAGTGTCCCAAGGAACCACCCTGCTCATCCCTACAGGCTGGATCCATGCTGTTCTCACCTCTCAGGATTGCATGGCATTTGGAGGGAACTTCCTTCACAACCTCAATATTGGCATGCAGCTCAGGTGTTATGAAATGGAGCGCCGCCTGAAAACCCCAGACCTCTTTAAGTTTCCGTACTTCGAGGCCATCTGTTGGTACGTGGCCAAGAACCTCTTGGAAATGCTAAAAGAGCTACGAGAGGACAACTGTCCACCACCAACCTACCTAGTGGAGGGAGTCAAGGCTTTAATCAGTGCACTGAGGACCTGGTTGAAAAGAGAGGTGACTGAGCCCACCAGTGAAGTACCAGACCATATCAGGCCTAACCATCTCATTAAAGAGCTGACCAAGGAAATCCGCTACCTGGAGGAGGAACCAGTCAGTGGTAGCAAGCCAGTGAAGTCTCAGGGAAGTGGGTGTGGAGTTCCATCTGGATCAAATGCCTGCCCGGCTACTCGTGCTACGCTGGAGAAGCTGTCCCAGGCCCGCCAGGCGAGAAGGGCCGCCAGGCGGTTGAGGGAGCAGCAGCGGCAGACCCCTAAAGTGCCCTCCAACTTGGACATCTTAGAGCAGCACACCCGGGAGGTGCTAAGGAGGCTGGAGGTGGGGCCGCTCGAGGAGGATGCGGCGTTCTGTGCCAAGGTTCGCGGGAAGCTCAACAAAGTGTCAACTGCATCCGCAGCTGCAGAGACTTTAGAGGAGAACCACCTACGGCTAATGCTGGTCAACGGCAGAATTATCAGAGATATGAGGCGGCCAGGCAGCAGCCCGGTAAAGACGGAGGGTGAGCGGTCATCTGTTGGCCCACCAAAGAGTTGTGTGGACGTGAAGTCGGAGAGGACGCGGCACAGTCAAGAGCAGCACAGCACAGTTGAGAAACCCCCACTCTTCAGTGGTCTGGAGAGGGTGAAGACTGAACTCAGGGAAGAAGTCTCAGGACACACCAGTGTGTCAGACGTGGATTTAGACAGCGACTCTCCCACAGAGCGTAAAGCATCATTGTCGtcatcgtcgtcgtcgtcgtcctcTTCTGACGAGGATTCAGGGAGTTcccaggaggaagaggaggacgaggagaaGAAGGGCTTATATCAGCAGAGAGGCTCAGGGCACACCATAGAGCTGGACCAGTCTGGCCAGAAACTcaggcacaaacacaaaccacTCAAACGAGAACGTCCTACCTCACCCAGCACAGAAGAGGCCATTCAGGGGATGCTATCTATGGCTGGTCTGCTGTGCTCCTCCAAGCCGGAGAAGGTAGGCTCGTCCCAGGAGCCCTGGTGGTCCAGCTCCAGCCAGTGCTCGCCGCTGGAGCAGAGGGAGGAGGCGCAGCACCAGCACCGACTGCAGGGGGACAAGAGCCCGATGGACAGCCAGGGCAACAGCAGCGAGGCCTGGGACAATCAGGGGCTCCCTAGCCCTCTTAGCCGAAGCCACGGCAGCAGCCCAGAGACAGACTACCAGTACTGTGACCCCTCAATGTCTCCACCCCACCCCTCCAAGAGGCACGCCCCCAACCCCCCACCTATCAGCAATCAGGCCACGAAAGGCAAGCGGCCCAAAAAAGGAATGGCCACAGCCAAGCAGAGACTGGGGAAGATCCTAAAACTCAACAGACATAATCGCGTCTTTGTGTAACACTCCAAATCTTCAAAAGCAAAATGATGCATGGGGACATTTTcttgaagacaaaaaaaggaaacattggCGTATTTGTTACAAGACACTTTTGTGCTGTGGAaatggagagaggaaaaaaaacccgAACACACTGCCTGGAGACTAATCTTGACTGAATCTTGACACGTAAAACACGCTCACTGTGCATGCTTAGGAGACAGGGTATTTGATATGAAATAAGCAAGTGCACGACTTCACCACACAAGCACACtaagaacaaaaacagaaaagagctACAGGAAGCAGAGCGGGACAAGCATGTCATAAAATGTTCTGCTGCAGGGAAAGGTGGATCCAAGCTCCTGCGGGCATTCAAATGGACAAAGGAGATGTAGGAGGTATACCAAACTAACAAGAAAATGACTCGCTTTGCTGGGAAGCAGCTTCTGATGCTAAGATCATCTGCATCACATCTTGATATTTACTCTCCCTGCTGAacgaacccccccccccactccgcACAACATTCACTTGCTTCATGTCTATCTGAGACAAACTGAACATGGAGGAGCAGATGCAACTGAGCTGTACATCTCGAGCAgggtctttttttcccccccctctGGCTCGGAGGATGGAGACGAGGTGCTAAGGAGGACGCGGTGAACTGAAATTTCAAAATGGTGCTTATTGTTTGTACTTTTCTCCACTCATGCTTGTCCCAAGCCCTCACACCCCTTTATCTTAATCACACCAGCAATAATGACTTTGAGGAGAGAAGAAACGGTGAGAGGCAGCACTTTGGTGCATTATTCCCCAATTCTTCTAtttgta

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11445 KDM7A, JHDM1D; [histone H3]-dimethyl-L-lysine9 demethylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307615 lncRNA downstream 123433 9116810 ~ 9119971 (-) True G226803
TU307611 lncRNA downstream 203547 9037771 ~ 9039857 (-) True G226800
TU307604 lncRNA downstream 214034 9029046 ~ 9029370 (-) True G226797
TU307592 lncRNA downstream 273506 8969389 ~ 8969898 (-) True G226787
TU307503 lncRNA downstream 320460 8918491 ~ 8922944 (-) True G226711
TU307780 lncRNA upstream 475758 9742004 ~ 9742560 (-) True G226917
TU307910 lncRNA upstream 951840 10218086 ~ 10220450 (-) True G227019
TU307912 lncRNA upstream 954710 10220956 ~ 10284085 (-) False G227020
TU307914 lncRNA upstream 957248 10223494 ~ 10225897 (-) True G227021
TU307913 lncRNA upstream 1008086 10274332 ~ 10284085 (-) True G227020
XM_039792210.1 mRNA downstream 10051 9202894 ~ 9233353 (-) True kmt2e
XM_039791816.1 mRNA downstream 108989 9120327 ~ 9134415 (-) False orc5
XM_039791815.1 mRNA downstream 110696 9120327 ~ 9132708 (-) False orc5
XM_039791814.1 mRNA downstream 110696 9120327 ~ 9132708 (-) False orc5
XM_039791813.1 mRNA downstream 110696 9120327 ~ 9132708 (-) True orc5
XM_039791668.1 mRNA upstream 7923 9274169 ~ 9327128 (-) True si:dkey-97m3.1
XM_039791302.1 mRNA upstream 68256 9334502 ~ 9594691 (-) False magi2a
XM_039791301.1 mRNA upstream 68256 9334502 ~ 9594691 (-) False magi2a
XM_039791300.1 mRNA upstream 68256 9334502 ~ 9594691 (-) False magi2a
XM_039791299.1 mRNA upstream 68256 9334502 ~ 9594691 (-) False magi2a
XR_005638147.1 other downstream 449494 8565242 ~ 8793910 (-) False ppfia2
XR_005638146.1 other downstream 488572 8572959 ~ 8754832 (-) False ppfia2
XR_005638142.1 other downstream 488574 8565242 ~ 8754830 (-) False ppfia2
XR_005638144.1 other downstream 488575 8565242 ~ 8754829 (-) False ppfia2
XR_005638143.1 other downstream 488575 8565242 ~ 8754829 (-) True ppfia2
unassigned_transcript_1484 other upstream 929538 10195784 ~ 10195870 (-) True trnay-gua_60
unassigned_transcript_1485 other upstream 930101 10196347 ~ 10196433 (-) True trnay-gua_61
TU308019 other upstream 1247248 10513494 ~ 10522962 (-) True G227082
TU308180 other upstream 1713952 10980198 ~ 10981259 (-) True G227197
XR_005638189.1 other upstream 2357763 11624009 ~ 11676832 (-) False pcloa

Expression Profile