RNA id: XM_039792224.1


Basic Information

Item Value
RNA id XM_039792224.1
length 2464
RNA type mRNA
GC content 0.45
exon number 7
gene id gxylt1b
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 15511849 ~ 15521235 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTAGAAAGGAAAGACCTGCGAAACCTGTTAAGTGGGTGAGATGTATAAAATCTTAACAGAAATGTAAAGTATCAAACATACCAAAAATAGAATGAAAGCAGAAAGGCATAGGGATAATATATTGTAGAAtcaaaaacactaaaaatgTAAGCTGTGACAATCTGGGACAGCTTTgttttgttacattgttttcCACACTAAAAAACTGTCACACAgtatttaaattgttaaatagCATTTATCTAGTGGCATAGCATGCCATTTGTGTGTAATCTTGTACATTCTTCCCACTCTGTTCTATTACACAAGACTATTCTATACTTATTCCTTcagatcaaacaaacaaacaaacaaccaaccaaccaaccaaccaaccaaccaaccaacaacaacaacaacaacaacaacaacaagtaaaTAAAGCTATTGTCATTGTTTCAAAAGCTTTAATAGTAAGAAATGTAGAGAAGGTTGCAGAGCCAGACCGCCAGAGGGCGTAATTACCACGCCTgataagttttattttttaaacgctGACCGGAAGTGCGTTACAATTGCGAGGAGCTTCGCAGTTATTATTTTTACCATACGCTAGTTTCTGTGTCATGACTTTAGCTCCAAGTTGCGTTTTCAAACTCCAAAATGCGGCGTTACATTCGTGCACTAATGTTGTGCACGGTGTTTGCCATGTTTTCGGGCTTGTATGtttacagtaaactgttttactCGGACGTGTCGGGCGGTGGAAACGGACCTAGAAGGGTTTTCATCCCACAGAGAGTCCCCGGAGGCAGGCGAGGTGCCGCGGACAAAACTGGGCCCCAAAGCCCACACTGGTACAATAGGTACATCATGCGTCAGCGGGGTCAGGGGGAGGCAGGTGGCGGCAGCGTTCAGAGCAGACCCGAACCTCCCATGCACCTGGCTGTGGTGGCCTGTGGCGAGAGGCTGGAGGAGACTCTCACCATGATCAAGTCTGCTGTGCTTTTCAGCATCAAGAGCCTCCACCTGCACATCTTTGCTGAAGATCAGCTACATGCCAGCTTCATTAAAGCTTTGGAGTCGTGGCCTGGTTTTATTCACTCCAGGTTCAACTACACAGTCTACTCCATCAGCTTCCCCAGTGAGAACGCAGCCGAGTGGAAGAAACTCTTCAAACCCTGCGCTTCTCAGAGGCTCTTCCTACCTCTGATCCTGAAGGATGTTGACTCAGTCGTGTATGTCGACTCAGACATCCTCTTCCTGCAGCCTGTAGACCACCTGTGGGCGTTCCTGTCCCAGTTTAATTCCTCCCAGTTGGCTGCTATGGCCCCGGAGCACGAGGAGCCCCGTATTGCCTGGTACAACCGCTTCGCCCGCCACCCCTTCTATGGCAGGACGGGCATCAACTCAGGGGTCATGTTAATGAACATGACAAGGATGAGAAACATGTTCTTTAAGAATGACATGACGTCTGTGGGGCTGCGTTGGGAGGAGCTGCTGATGCCTCTACTTCAGAAATACAAACTCAACATAACCTGGGGAGACCAGGACCTTCTCAATATCATTTTCCACCACAACCCTGAGTGCTTGCTGGAGTTTCCGTGCCAGTGGAATTATCGTCCTGATCATTGTATCTATGGCAGTAACTGTGCGTCAGCTGAAGAAGATGGCATCTACATACTGCATGGAAACAGAGGGGTTTACCACGACAACAAACAACCTGCCTTCAGGGCTGTTTACGAGGCCATACGAAAGGGACCGAACTGCAAGCAAATGAGCCGCATAAAAAATGGTAATTCCCCTTTGATTTCCTCGGAGCATTGTAAAGGCTCCTTCATTATTGGGAAGACAGAAATTTCTACTGTAATCCCTGGTTATCGCTGGACGGTAAGCCTATAGCATAAAACTGACTCCAACCATGTGGACTGCTTTATGTTTTGCCcggctgaccaatcagattagATGTGGATTCCCTTCTGATCTCAGCATGCCTTGCGGATTTAGTTTTTAATTTATCCAGGGAAAGATATCCTCCAAGCCCAAATGCTGCCCAAAGCACCACTTTGCTTACTTACTGAGGGAATCTGATCAATTCCACTGGAACAGTAGGAGGCTAAGAGCTGTCCTCGGGGAGTTTTGATAGTAGTTTGGGATTTCAGCCTGCTCACTTTAAGTTTCAAAGCCCACTCCTCCTACCCTCCAGACAACCATCATCCCCGTGTTTCAGCTCTTTGAAGAAACAGGAGAGTACAAGTCATCTTACGAGTCTGCCTTCATATTCAGTACAATTccttgttttaaaatgtcctcgttatcgtgTGCTTTTTGTTTACTGAATGTCTCAACATGTAGGATCAATACATTTAAATTGAAGGGATCTTATTCTTTGGATTAAGAGAAAAGTGCTTTGGAATTTATCTTTAGATCATCGAAGcaaacaatacaatacatcaCACCAAATCCAACCAATGAATTGTTTTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309478 lncRNA upstream 1170 15494689 ~ 15510679 (+) True yaf2
TU309479 lncRNA upstream 1170 15494689 ~ 15510679 (+) False yaf2
TU309453 lncRNA upstream 39963 15471404 ~ 15471886 (+) False prickle1b
TU309418 lncRNA upstream 180715 15300536 ~ 15331134 (+) False lrrc17
TU309415 lncRNA upstream 221341 15290187 ~ 15290508 (+) True G228065
TU309500 lncRNA downstream 10230 15531131 ~ 15531439 (+) True G228119
TU309509 lncRNA downstream 156454 15677355 ~ 15680269 (+) True G228128
TU309512 lncRNA downstream 159472 15680373 ~ 15681491 (+) True G228130
TU309521 lncRNA downstream 169007 15689908 ~ 15699902 (+) True G228136
XR_005638130.1 lncRNA downstream 200623 15721524 ~ 15722242 (+) True LOC120553205
XM_039791823.1 mRNA upstream 671 15494680 ~ 15511178 (+) False yaf2
XM_039791820.1 mRNA upstream 671 15494681 ~ 15511178 (+) False yaf2
XM_039791822.1 mRNA upstream 4956 15494677 ~ 15506893 (+) False yaf2
XM_039791545.1 mRNA upstream 18426 15491283 ~ 15493423 (+) True zcrb1
XM_039791546.1 mRNA upstream 18426 15491290 ~ 15493423 (+) False zcrb1
XM_039792431.1 mRNA downstream 238410 15759311 ~ 15759832 (+) True akap14
XM_039791846.1 mRNA downstream 241892 15762793 ~ 15764738 (+) True avpr2l
XM_039791849.1 mRNA downstream 249111 15770012 ~ 15772705 (+) False LOC120553452
XM_039791850.1 mRNA downstream 249252 15770153 ~ 15772705 (+) True LOC120553452
XM_039791845.1 mRNA downstream 256014 15776915 ~ 15789611 (+) True LOC120553449
XR_005638140.1 other upstream 314019 15168604 ~ 15197830 (+) False LOC120553256
TU309000 other upstream 1506956 14002363 ~ 14004893 (+) False LOC120553485
TU309001 other upstream 1507000 14002363 ~ 14004849 (+) False LOC120553485
unassigned_transcript_1494 other upstream 1676848 13834929 ~ 13835001 (+) True trnak-cuu_14
unassigned_transcript_1493 other upstream 1677518 13834221 ~ 13834331 (+) True trnal-caa_24
XR_005638118.1 other downstream 1250157 16771058 ~ 16831243 (+) False cald1a
XR_005638117.1 other downstream 1250161 16771062 ~ 16831243 (+) False cald1a
TU309802 other downstream 1398762 16919663 ~ 16922823 (+) True G228335
unassigned_transcript_1495 other downstream 2069190 17590091 ~ 17590163 (+) True trnak-cuu_15
TU310117 other downstream 3009264 18530165 ~ 18531168 (+) False srr

Expression Profile