RNA id: XM_039792228.1


Basic Information

Item Value
RNA id XM_039792228.1
length 3622
RNA type mRNA
GC content 0.53
exon number 19
gene id lrig3
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 19546626 ~ 19569057 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atgtgttcCTCTACGCAGGCTCGCAGTTTAGCAAGACTCGCCGTGGTTTTCCTACTGTTTGTGAAGCTCCAGCGTGGATCGGGTGCTAACGCAAGGACGTGTCCCCCTCCCTGCGTGTGTACTGAGGAGCTTTTGGACTGCAGTCGGCTGAAGAGGGGCCAAATTCCAGACACGATCCCGGAATGGACAGTTCAACTAGACCTGAGCCATAACAAATTGCAGGTGCTTGACGGCACTTTGTTTTCCAAACTACAACATCTAAGTGAAATAAAGCTGAACCACAATGAACTGGAGGCAATACCTGATTTGGGCCCTTATGCTTCAAACATCACAACACTCATTCTAGCAAACAACAGGATCACGAGGATCTCTGTGGAGCAGCTTAGGCCCTTCCTCGCTCTGGAAATGCTCGACCTCAGCAACAACAATattgtggaaataaaggccggCTCCTTCCCAGCTCTGCCTCTCAAGGACCTgtTCCTCAACAACAATCGTATCTCGTCACTCGAGACGGGCTGCTTCACCAACCTGTCCAGCAGTCTGCAGGTTCTTCGGCTCAACCGCAACCGGCTCTCCACCATCCCAGCTAAGATCTTCCAGTTGCCCAACCTCCAGCATCTggagTTGAGCAGGAACCGGGTTCGCAAAGTGGAGGGCCTGACCTTCCACGGTCTGCAAGCTCTTCGCTCCTTAAAAATGCAGAGAAACGGCCTGAGCCGCCTGATGGACGGAGCCTTCTGGGGCCTCGGCAAAATGGAAGTCCTGCAGCTGGACTACAACAACCTGACGGAGGTGAGTAAGGGCTGGCTCTACGGCCTGTTGACTCTGCAGAAGCTCCACCTCGGCCACAACGCCATCGGCAGGATCCAACCTGACGCCTGGGAGTTCTGCCAGAAACTCAGTGAGCTCAACCTCTCCTCCAACCATCTGTCCAGACTGGAGGAATCCAGCTTCGTAGGCCTCAGCCTGCTGGACGAGCTCCACATCGGAAACAACCGTGTGAGCTTTATTGCAGACGGAGCTTTCCGTGGCCTCTCCAACCTGCAGATGCTGGATCTCCAAAATAATGAAATCTCCTGGACCATTGAAGACATGAATggccctttctctgctttggaCAAGCTGAAAAAACTatTTCTGCAGGGGAACCAGATCCGCTCGGTGACCAAAAAGTCTTTCTCTGGCCTGGACGCGCTGCAGCACCTAGATCTGAGCAATAACGCCATCATGTCCATCCAAGCGAACGCCTTCTCTCAGATGAAGAACCTGCAGGAGCTGCGTCTGAATACCTCCAGTTTGCTGTGCGACTGCCAGCTAAAGTGGCTTCCCGTCTGGGTGGCAGAACAAACCTTCCTGCCCTGCGTCAACGCCAGCTGCGCCCACCCGCAGATGCTGAAGGGCAGGAGCGTGTTTGCCGTCAGCCAGGAGGAgtttgtgtgtgATGACTTCCCAAAGCCTCAAATCACTGTGCAGCCGGAGACCCAGTCAGCCCTCAAGAGCACCAACGTGACGTTCGTCTGCTCAGCAGCCAGCTCCAGCGACTCACCAATGACCTTTGCTTGGAAGAAAGACAATGAGGGCCTGAACGACGCGGAGATCTACAACCAGGCCCACTTGCGGGTGCAGAAAAGCGCAGGAGGCGAGACGGAGGTGACGGAGTACACAACCACCCTTCAGCTACGTAATGTGGAGTTCTCCAGCGAGGGAAAGTACCAGTGCGTCATCTCAAACCACTTTGGATCATCCTATTCAACAAAGGCCAGACTCACTGTCAACATGCTCCCTTCCTTCACCAAGATGCCAATGGACCTGAGTATCCGTGCTGGAGCAACAGCCAGGCTGGAATGTGCCGCCGTTGGTCACCCTTCCCCTCAGATTGCCTGGCAGAAAGACGGAGGCACCGACTTCCCTGCTGCCCGCGAACGCCGCATGCACGTCATGCCGGAGGACGACGTGTTTTTCATAGTGGACGTCAAGACAGAGGACATCGGCGTTTATAGCTGCACAGCTGCGAACACAGCTGGCACCGTTTCTGCAAATGCTACGCTAACTGTTCTAGAAACCCCTTCCTTCTTACGGCCCCTCATGGATCGCACTGTGGCCAAGGGCGAAACCGCTGTCCTCCAGTGCATAGCTGGTGGCAGTCCTCCCCCAAGGCTAAACTGGACCAAAGACGACAGCCCGCTGGTAGTGACCGAGCGCCATTTCTTCGCAGCAGCCAACCAGCTCCTCATCATCGTTGACGCTGCAGAGGCTGACGCAGGGAAGTACACCTGCGAGATGTCCAACGCGCTGGGCACGGAGAGGGGTAACGTTCGGCTGGCTGTCATACCAAATCCCAACTGCGACTCTGGAGTGCAGGGCGGCGTGGGAGTCGGCATCGCGGGCGGGGTTGGGTCAGACGATGATGGGTGGACCACAGTGGGAATCGTCATCATAGCTGTGGTGTGCTGTGTGGTGGGCACTTCACTGGTTTGGGTGGTCATCATCTACCACACACGGCGACGCAATGAGGACTGCAGCGTCACCAACACAGATGAGACCAACCTGCCTGGCGACATTCCCAGCTACCTGTCCTCCCAGGGCACACTCGCTGACCGTCAGGACGGCTACATCCCATCAGAGAGTGGCAGCAGCCATCAGTATATGGCTTCGTCTATTAGCGGCTTCTACCTGCAGCCTAAAGACATGAATGGTTTTTGTCAGCTGGATACAGGAAGTGAAGCCGACATGGAGGCAGCCATCGATCCTCTCCTCTGCCATTATCAAGGTCCAATCAGCTCCCTGCTTCGCCAGGACAACATCTACTCCGCTGACCCATCGGAAGTCTTCACAGgCTGTTCTATCGACCAAAGGCCCGTCTGCATGGACTCTTACAGTGGCAGCCTGACCAGCTCTAAAATGAGGGACTACTTCCTGTCTGAGCATTTTGacctctgctcctcctctgtcCTGATGCAGCTCCCCAACGCCAGTCTCCCTCACGGCCCCTCTCACCAGCAGAGTGACCGCCGACCATCCATGGAGGAGGGAGAAGCCATCGACTACGGGAGACCTCATGAATGTCTTCCCCCCTCCAACACCTTCATGGGAACATTTGGGAAAGCTCCCTGGAGGCCTCATAAGGACCAATACACAGGCTTTGCCCCGCCGTCGGTGACGCGTAACGGAATAACTCTGCATGAGAATCCTTACATCGCTCCAGATGCCGATTCAGACCTCGAGGACAACGGTCTCGCCAAGGACTCGGCGTCAGAGCAGAGCAACAGCGTTTATGAACAGCTGTATGACAGCAAAAGGACTGATCCCATCCCACAGCGCAGAACGAGCACTTAGCTCAGTGACTGTTTTTAATGAAGAGGACGACCAAAAAAATAAGAACATTTCTACCTCACTGAATGGACACTTTTGCAATAAAGGACTCCTCAAATGTGCAACGAGTGAATGTAACGGACACTTTGATGTTCCAAGAGAAAAGTAAAAAGGAGCATATTAGCAGCTGTTCTTCAAGGACACAGCTTCAGTTAAATATAgatgaatatataaatatacgtttttttatataaagtttattatattttgtaaatTGTATATAAACAGATTCCATTATTTTTGCTTA

Function

GO: NA

KEGG:

id description
K24610 LRIG1_3; leucine-rich repeats and immunoglobulin-like domains protein 1/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310530 lncRNA downstream 32192 19514103 ~ 19514434 (-) True G228882
TU310528 lncRNA downstream 39066 19506683 ~ 19507560 (-) True G228881
TU310527 lncRNA downstream 47016 19499238 ~ 19499610 (-) True G228880
TU310514 lncRNA downstream 63473 19482867 ~ 19483153 (-) True G228871
TU310513 lncRNA downstream 64009 19482172 ~ 19482617 (-) True G228870
XR_005638134.1 lncRNA upstream 148165 19717222 ~ 19718412 (-) True LOC120553214
TU310618 lncRNA upstream 283907 19852964 ~ 19905943 (-) True G228946
TU310627 lncRNA upstream 289046 19858103 ~ 19858863 (-) True G228949
TU310623 lncRNA upstream 308040 19877097 ~ 19882079 (-) True G228947
TU310720 lncRNA upstream 732045 20301102 ~ 20301438 (-) False cdk17
XM_039791749.1 mRNA downstream 42320 19495419 ~ 19504306 (-) False rpap3
XM_039791750.1 mRNA downstream 42702 19495419 ~ 19503924 (-) True rpap3
XM_039791748.1 mRNA downstream 42707 19495419 ~ 19503919 (-) False rpap3
XM_039791045.1 mRNA downstream 118197 19418241 ~ 19428429 (-) False LOC120553005
XM_039791044.1 mRNA downstream 118197 19418241 ~ 19428429 (-) True LOC120553005
XM_039791390.1 mRNA upstream 164009 19733066 ~ 19806755 (-) False LOC120553212
XM_039791388.1 mRNA upstream 164009 19733066 ~ 19806755 (-) True LOC120553212
XM_039791379.1 mRNA upstream 237757 19806814 ~ 19839350 (-) True etv6
XM_039791380.1 mRNA upstream 238982 19808039 ~ 19839349 (-) False etv6
XM_039791378.1 mRNA upstream 238982 19808039 ~ 19839349 (-) False etv6
unassigned_transcript_1502 other downstream 93598 19452946 ~ 19453028 (-) True trnal-cag_24
unassigned_transcript_1501 other downstream 94076 19452469 ~ 19452550 (-) True trnal-cag_23
unassigned_transcript_1500 other downstream 94553 19451988 ~ 19452073 (-) True trnal-cag_22
unassigned_transcript_1499 other downstream 98480 19448064 ~ 19448146 (-) True trnal-cag_21
unassigned_transcript_1498 other downstream 99523 19447021 ~ 19447103 (-) True trnal-cag_20
TU310604 other upstream 164045 19733102 ~ 19807098 (-) True G228934
TU310602 other upstream 242188 19811245 ~ 19839302 (-) False etv6
TU310603 other upstream 242188 19811245 ~ 19839302 (-) False etv6
TU310704 other upstream 497979 20067036 ~ 20122339 (-) False rerg
TU310933 other upstream 1388600 20957657 ~ 20958220 (-) True G229199

Expression Profile