RNA id: XM_039792229.1


Basic Information

Item Value
RNA id XM_039792229.1
length 2098
RNA type mRNA
GC content 0.44
exon number 12
gene id ifrd1
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 16322115 ~ 16329608 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTTTTTACGCAGCCCTGTTTTATGAGGGAAAATGTATCGTCTCGGTCAACAGTGTATCCCCAAGATCGCCTTCAATTCCTTTTTATCCGCTGTGCCACgggaatattttcattttacgAGACAATATAATAAAAGCTGGTCGTGTATTGGCTGATTTTGGatcaaattatatatttatctGCACGAAAATGCCGAGGACCAAGAAAAAGAATGGCAGGGGGGGGCAGCATGGAAATGTGCAGCCTTTCAGTGATGAGGATGCCTCCATTGAGACCCTCAGTCATTGCAGCAGCTTCAGTGACACTGCCAGTGTTGCAGATGAAGGTGGAGAGGCCAGTGAGGACACAGCCCAGGAGGATTTCCAGTACAAGCTGAAGGGGTTCATAGACAGCACGGTTGATAAGAGTGCTAAGACCAGACAAGGGGCACTGGATGGGCTTAAGACGGCAATGGCCACACGGATCCTGTGTGAGTTCATCTCCGAGAGAAGGATGACTATCACAGACAGCATTGAACGCTGCCTAAAGAAAGGCAAAGGAGAGGAGCAGCGGGCAGCAGCTTCTTTAGCCTGCCTGCTGTGTATCCAGCTGGGCTCTGGCATCGAGAGCGAGGAGGTGTTCAAGACGCTGAAACCCATCTTCAAAAACATCCTGGCAGATGGATCAGCCAACATACAAGCCAGACAGGCTGTTGCGACAAGTCTGGGCCTGTGTACTTTAGTGGCAGAAGATGACATTTTGGACGTGCATTCTACCATGGAGTGCTTTGAGAATCTGTTCACCCGGTCCTATACGAGGAAGGATGGTACCTGTCCTTTGATCAATCCCCAGACAAGCCAGCTCCATACCAACGCCCTGCTGTCATGGGCACTGCTGCTCACCATCTGCACTGCCAGCCAGCTCAAAGACATCATGTGCAAACACCTGCCTAAACTACCAAGATTGCTGGAAAGTGAGGATGTCAACATGAGAATTGCTGCAGGGGAGACCATTGCCCTGCTCTTTGAGTTGGCCAGAGACATGGACTCTGAGTTTGagtttgatgactgggatgaaCTGTGTGACAAACTGAACGCGTTGGCCACAGACTGTAACAAGCACAGAGCCAAGACTGACAAGAGGAAGCAGCGGTCTGTGTTCAGAGACGTACTCAAGGCTGTTGAGGAGGCTGACTTCCAGTCAGAGACCATTCGCTTTGGGACAGAGCGTATGACCATTGACAGCTGGGTCAGAAAGAGGACCTATGATGCCTTCAGAGAGTTTGTAGGCTCTGGGATGAACTACCACCTAcagGCAAATGAATTCATCCGAGATGTTTTTGAACTGGGACCACCTATGCTGGTTGATTCAGCAACAATGAAGGCCATGAAAATCTCTCGCTTTGAAAGGCATCTCCACAACTCTGCTGCATTCAAGGCTCGGACCAAGGCCAGAAGCAAGTTCAGGGACAAGAGAGTGGATGTGGGagaattttaacttttttttttttttttttttttttttaatcttttgttttTCACTCTAATACCCTATTCATCAGGCTTCCCTGCTTTTTAGATGAATTGTCACAACTTTGTGTCCTTGTGATCCTCTCTCAAAATATATCTTTTGAATATCAAACCCTGACCCTCTGTAGACTTGAAAGGTGGCTTTATCACAGATGCTCTATAGTGGACAAAACATTCTTTTTATAACCTCCATTCAAGTCTACAGGAGGTAAGTGTTTGATAATCAAACCATAGGTTTGGAGTATAACTTTAATGTATCCACTTAGATGGTGGTGTTGTACATATAGTGTATATTTGTCTGCTCCTCATGTTAATATTCATTAggtggctttttcttttttgtggacataaattatataattttgcCAGCATTTGTCTTGTAGGTCTAGTTAGTTAATAGCAATGTCAAGACATGTTGTGACTGATGTAACACTTTGTTGAATTTGTATTTAAGTTGTACTACCTTGTTTTCTTAGCAGGTTATTTATGTAGAACTTTGAATATTCTGCTGTCTTTTTAGTATTGGGTATGTAATCTAAAGGGCAAGGATggtgaaataaacacaaaagcTGTAAGAAATGGCTCCCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309647 lncRNA downstream 97966 16216115 ~ 16224149 (-) True G228221
TU309501 lncRNA downstream 790676 15531131 ~ 15531439 (-) True G228120
TU309482 lncRNA downstream 811333 15494704 ~ 15510782 (-) False G228111
TU309481 lncRNA downstream 811333 15494995 ~ 15510782 (-) False G228111
TU309483 lncRNA downstream 811333 15499836 ~ 15510782 (-) True G228111
TU309734 lncRNA upstream 206410 16536018 ~ 16536293 (-) True G228283
TU309741 lncRNA upstream 417135 16746743 ~ 16747040 (-) True G228290
TU309755 lncRNA upstream 495221 16824829 ~ 16831239 (-) True G228295
TU309834 lncRNA upstream 584999 16914607 ~ 16949806 (-) True G228360
TU309840 lncRNA upstream 623335 16952943 ~ 17007000 (-) False G228363
XM_039791331.1 mRNA downstream 157210 16063869 ~ 16164905 (-) False foxp2
XM_039791328.1 mRNA downstream 157211 16063870 ~ 16164904 (-) False foxp2
XM_039791329.1 mRNA downstream 157211 16063870 ~ 16164904 (-) False foxp2
XM_039791335.1 mRNA downstream 157212 16063869 ~ 16164903 (-) False foxp2
XM_039791334.1 mRNA downstream 157212 16063869 ~ 16164903 (-) False foxp2
XM_039791234.1 mRNA upstream 306263 16635871 ~ 16652133 (-) True LOC120553145
XM_039791733.1 mRNA upstream 525384 16854992 ~ 16866194 (-) False LOC120553389
XM_039791732.1 mRNA upstream 525384 16854992 ~ 16866194 (-) True LOC120553389
XM_039791734.1 mRNA upstream 525384 16854992 ~ 16865508 (-) False LOC120553389
XM_039791736.1 mRNA upstream 538223 16867831 ~ 16868673 (-) True LOC120553391
TU309610 other downstream 530262 15771238 ~ 15791853 (-) True G228191
TU309380 other downstream 1233786 15062263 ~ 15088329 (-) False znf800b
TU309376 other downstream 1260686 15060003 ~ 15061429 (-) False znf800b
unassigned_transcript_1491 other downstream 2512436 13809607 ~ 13809679 (-) True trnak-cuu_13
TU308919 other downstream 2662843 13651662 ~ 13659272 (-) True LOC120553486
TU309744 other upstream 419234 16748842 ~ 16823432 (-) True G228291
TU309971 other upstream 965514 17295122 ~ 17302198 (-) True G228465
TU310227 other upstream 1501064 17830672 ~ 17927705 (-) False tafa5a
TU310229 other upstream 1501064 17830672 ~ 18100995 (-) False tafa5a
XR_005638136.1 other upstream 2040067 18369675 ~ 18421407 (-) False gramd4a

Expression Profile