RNA id: XM_039792247.1


Basic Information

Item Value
RNA id XM_039792247.1
length 1939
RNA type mRNA
GC content 0.43
exon number 1
gene id tnnt2c
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 7895545 ~ 7897483 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGAGACTTTGGTCAGCCTATCGTCACATGGTGAAGGCAAACCCTTAAAAAACCTCCACGTTGCACGCCCGAGACCCCAGTCTTCTCTTGTGTGCAACACACCAGCTGGTCTTGGTTGTTCATCCTGCTTTCTCTACCCTAGAAGGCCTCCGAGGTAACATCATGTCAGACACTGAGGAAATTGTGGAGGAGTacgaagaagaggaggaggtgaatgaggaggaagaagaagttGTAGAAGAGGAGCTGGAGGACGATGAAGCAGAGACGAAAGAAAAGCATGCAGAGGAGAACGAGCAGGAGGAGGACTCCAAATGGCGGCCTAAGACAACTTATGTGCCCAACATTGCTCCTCCGAAGCTCCCTGATGGCGAGAAGGTGGATTTCGATGACCTGCACCGCAAGAGAGTAGAAAAGGATTTCAACGACCTCCAGACCCTGATCGAGTCGCATTTCTCCACCCGtcagaaagaggaggaagagctgGTCGCGCTGCGTAACCGCATTGAGCGCCGTCGATCAGACAGGGCAGAACAACAACGTGTCCGCTCCGAGGAGGAACGTGAACGGCAAACACGTCTAGCCGGGGAGAAGACAAGGCGTGAGGAGGAGGCAGCCAAACTGCGCGCCGACGAGGAggcaaagaagaagatgatATTCACCAACAAGTCCTTTGGCGGCTACCTGCAGAAGGTGGACCAGAAGAAGGGCAAGAAGCTGACAGCAcgggaggagaaaaagaaggcCCTGATGGAGCGCCGGAAGCCACTCAACATCGACCACCTGAACCAGGAGAAGCTTGCGGAGAAGGCGCAGGACCTGTGGCAGTGGCTCCACCAGCTGCATGCAGAAAAGTTTGAGCTGGCCGAAAAGCTCAAGAGGCAGAAGTACGACATCTACGTGCTCCGAAACCGAGTCAGCGACCACCAGAGGGGCTCCAAAGCATCCAAGACCTCCCGCGGGGCCAAGGGCAAGTCTGGTTCCTGGAAGTAAACTAGACTGCCTCTAGTTGTTTCTGGACTATTTATCTCCTTTTTACAACATGTACCATAAAAGCTATCCTATGGATTGTAGGGCTGAATGATTTGGGGGGGGAACTCTAATTGTGATTTTTCTGCCAGacattgcgattgcgattcacgataacaaaaaaaaagtttagctaaagttcaatattcactgtgtaacagataaaacatgtctTGGAGtattataacatgagacaccatcaaaactgctctatATTCTTATGTAATGATGAGAACATAGATATGAGCTGCCTGAAATAAGTGTTTTTCTATTAATAAACATGGAACATTGAACAGTCAAACAAagaacatttatcacaaaagctaaagttataataataataataaaaacaattccaataagAATATCAGTACTTGTTTTGTAAactaaaatgtctgaaatgcTTCAGTTCATTAGCAGCatctacatattgcaccttctaccattatgttaaataaaataatacaaaataataaaagaaatccaCTGAAAGTgggacatttctgtaaacaatctgtGACATTATTTCAGCATCTATCTTATGAAAAAACAGTGGATATAACAATaataagaggaataaaaaatgttaaaccaaatATGACACCAAACATTTaactaaatattgcacattTGATTAATCGCGGTCGTCACGATTAGCTAATagcattttttcaaatctcGATTTCGATTATAAAACGATTAATCTTTTAGCCCCAATGGATTGTGAGTGGATTTGAGGGGGAACTCAAGTACATGAAGTTAATCAAGCCATAACATATTGAATGATATAAATGGTATACATATCTGATTGTTCTAACTTTTTCATACTGCTATTCATCTGTTTACAAGCTGTAGACTTTATTAAATCTGATGGAATGTGGGGTGGTGTTGATTTCCCTACTCAACTAGA

Function

GO:

id name namespace
GO:0006937 regulation of muscle contraction biological_process
GO:0005861 troponin complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307137 lncRNA upstream 187975 7616188 ~ 7707570 (+) False G226452
TU307138 lncRNA upstream 273814 7616188 ~ 7621731 (+) True G226452
TU307120 lncRNA upstream 326343 7566730 ~ 7569202 (+) False LOC120553156
TU307093 lncRNA upstream 363525 7530442 ~ 7532020 (+) False LOC120553154
TU307039 lncRNA upstream 469375 7425057 ~ 7426170 (+) False ascl1a
TU307206 lncRNA downstream 126878 8024361 ~ 8028661 (+) True G226505
TU307208 lncRNA downstream 150296 8047779 ~ 8057052 (+) False G226507
TU307210 lncRNA downstream 154289 8051772 ~ 8057617 (+) True G226507
TU307219 lncRNA downstream 362850 8260333 ~ 8262877 (+) True G226515
TU307221 lncRNA downstream 362850 8260333 ~ 8306828 (+) False G226515
XM_039791873.1 mRNA upstream 8020 7869761 ~ 7887525 (+) True LOC120553463
XM_039792172.1 mRNA upstream 289707 7592879 ~ 7605838 (+) False LOC120553589
XM_039792174.1 mRNA upstream 289707 7592998 ~ 7605838 (+) True LOC120553589
XM_039791255.1 mRNA upstream 326242 7566655 ~ 7569303 (+) True LOC120553156
XM_039791254.1 mRNA upstream 333340 7546428 ~ 7562205 (+) True LOC120553155
XM_039791580.1 mRNA downstream 80594 7978077 ~ 8012811 (+) True ppfibp1a
XM_039791581.1 mRNA downstream 80594 7978077 ~ 8012811 (+) False ppfibp1a
XM_039791582.1 mRNA downstream 80594 7978077 ~ 8012811 (+) False ppfibp1a
XM_039791583.1 mRNA downstream 80594 7978077 ~ 8012811 (+) False ppfibp1a
XM_039791585.1 mRNA downstream 80594 7978077 ~ 8012811 (+) False ppfibp1a
TU307011 other upstream 495146 7396494 ~ 7400399 (+) False nrip2
XR_005638075.1 other upstream 563286 7323070 ~ 7332259 (+) True amdhd1
TU307013 other upstream 574496 7318540 ~ 7321049 (+) False snrpf
unassigned_transcript_1480 other upstream 748205 7147269 ~ 7147340 (+) True trnaw-cca_35
XR_005638177.1 other upstream 2522342 5283759 ~ 5373203 (+) False abcc9
TU307294 other downstream 529208 8426691 ~ 8432697 (+) True rps16
XR_005638164.1 other downstream 1237111 9134594 ~ 9173220 (+) True lhfpl3
TU307644 other downstream 1339781 9237264 ~ 9241349 (+) False ndufb2
unassigned_transcript_1481 other downstream 2294843 10192326 ~ 10192412 (+) True trnay-gua_57
unassigned_transcript_1482 other downstream 2296947 10194430 ~ 10194516 (+) True trnay-gua_58

Expression Profile