RNA id: XM_039792250.1


Basic Information

Item Value
RNA id XM_039792250.1
length 2118
RNA type mRNA
GC content 0.51
exon number 16
gene id slc38a4
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 21518625 ~ 21571113 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAATTTCCACTCAGTCTTCTCGCTTGTTAAATGGAAAGGGTCTCCAACTCTTGTCTCCACTAAGTCCGCCTGCTAGCTGCTGCAGCTGTCCGCCTCCACCGAAACATTAGGTCTTTTGTAACAACTTCTAGCAGAGGTTACAGAAGAAGCACATCGACGCCTTGTGAATACCAAACGCTGAAATACTGAAAACCGAACTTCTCCGCCTCTCGCCCTGCCGCGCACCACTATGCCGGGAGCCGTGGATCGTATGGAGCTAAGTAAAGTCTCCACAGAGGCTGATGATGACAGCACCGACAGCCTGGATGACCGCTTCACAGAGCCCATCGACTCTGAGAAGGCCACCATTGACAGTCAGTTTATGGATGACAATGAGGACGGAGAAAGCCAGAAGTTCCTGTCAAATGGtttgatgaagaagaagaaatatgaGGAATACCATGAAGAATATCATCCCGGCCACACCTCCTTCGGGATGTCTGTGTTCAACTTGAGCAACGCTATCATGGGCAGCGGCATCCTGGGCCTGTCCTACGCCATGGCAAACACCGGCATTGTGCTCTTTACAATCCTCCTCGTCGCTGTGGCCAGCCTCTCCTTATATTCTGTAcatcttctccttatgacaGCTAAAGAAGGAGGATCCCTCATCTATGAGAAGCTGGGAGAGAGAGCATTTGGTTGGCCCGGGAAAATGGCAGCATTCGGATCCATAATTATGCAGAATATTGGAGCCATGTCCAGCTACCTCTTTATCGTGAAGTATGAGCTACCTGAAGTGATAAGAGCCTTCTTGGGTTTAGATGAAATCtctggTGAATGGTACCTGAACGGGAACTACCTGGTGGTGTTTGTGTCCATTGGAATCATTCTGCCTTTATCGATCCTTAAAAATCTGGGCTACCTGGGCTACACCAGCGGCTTTTCCCTTTCCTGCATGGTCTTCTTCCTGGGTGTGgTGATCTACAAGAAGACCCAGCTGCCCTGCCCTCTTCCTTTCTTTTACCACCACTCAGCCAACCTCAGCATGAACGCCACAGACATACAGGGGTTGTACCCGCTAAACAACTCGGCGCACATAGATTTCTCCCGGGCCGACGTTTCCCCGGCTGTGCTCGGCACCCACGACGGCCACCACTCCACCGGCGTCCACGTCGAGCCTCACCCCAACGACGAGGAGATGTGCACGCCCAAATACTTTGTCTTCAACTCACAGACGGCGTACACCGTGCCCATCCTGGCCTTCGCCTTTGTCTGCCATCCCGAAGTGTTGCCTATCTACAGTGAGCTGAAAGATCGCAGCCGGAAAAAGATGCAGAACGTCTCCAACCTGTCCATCCTGACTATGCTCATCATGTACATGCTGTCAGCCCTGTTTGGCTACCTCACCTTCTATGACAACGTAGAGGACGAGTTGCTCCACACCTTCACCAAAGTGTATAAGTTTGACacgttgctgctgctggtgcgTTTGGCTGTTCTCACTGCCGTCACTCTGACTGTCCCCATTGTGCTGTTCCCTatcCGCACTTCCATCAACACACTGCTGTTCAGCAATCGAGACTTCAGCTGGGCTCGCCACATGCTGATTGCCGCCGGCATCCTGGCCTTCAACAACATGTTGGTCATCTTCGTCCCCACCATCAGGGACATCTTCGGTTTCATCGgttcCTCTGCAGCCACTATGCTCATCTTTATTCTACCTGCTGCCTTTTACATCCGCCTGGTCAAATCCGTGCCGTTCCGCTCCCCGCAGAAAATCGGGGCGGCCGTCTTCCTAGTCGTGGGAATCGTCTTCATGATTGGCAGCTTGTCACTCATCGTCCTCGACTGGGTCCACAACCCCCCAGGCTCCAGCGGCGGTCACTAAGCTCCTTCTTCCCTCCTCAGATTCACATTTGACAGTGCAGCaaccaccccctcccccccttcatCAAATCACAAACATCAATTATAAAACCCCTCAACATATGGACATAATATGCTGCATAGAATATCACTGGAGGGAGACTTTTTTGGCTTGGTTTctattttgttgttgctgtaaaaGTTCACAACGCAAACGAGAGAatcaaaaaaaaccaaaaaaacagagAGGGATCCGGTTTGCCACAAAGA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311122 lncRNA downstream 57165 21461076 ~ 21461460 (-) False slc38a2
TU311121 lncRNA downstream 57165 21461137 ~ 21461460 (-) False slc38a2
TU311129 lncRNA downstream 65473 21450463 ~ 21453152 (-) True G229351
TU311131 lncRNA downstream 65473 21450463 ~ 21453152 (-) False G229351
TU311069 lncRNA downstream 253813 21264501 ~ 21264812 (-) True G229296
TU311185 lncRNA upstream 71402 21642515 ~ 21642768 (-) True G229390
TU311187 lncRNA upstream 84789 21655902 ~ 21656162 (-) True G229392
TU311216 lncRNA upstream 110447 21681560 ~ 21682539 (-) True G229413
TU311214 lncRNA upstream 110500 21681613 ~ 21682466 (-) False G229413
XR_005638095.1 lncRNA upstream 205920 21777033 ~ 21777676 (-) True LOC120553093
XM_039792251.1 mRNA downstream 44023 21461137 ~ 21474602 (-) True slc38a2
XM_039792072.1 mRNA downstream 153517 21335537 ~ 21365108 (-) False gas2l3
XM_039792073.1 mRNA downstream 165152 21335537 ~ 21353473 (-) True gas2l3
XM_039791881.1 mRNA downstream 217369 21295513 ~ 21301256 (-) True med21
XM_039791727.1 mRNA downstream 225389 21269874 ~ 21293236 (-) True LOC120553384
XM_039791971.1 mRNA upstream 113097 21684210 ~ 21753271 (-) False LOC120553490
XM_039791970.1 mRNA upstream 113097 21684210 ~ 21753271 (-) True LOC120553490
XM_039791972.1 mRNA upstream 113097 21684210 ~ 21753269 (-) False LOC120553490
XM_039791973.1 mRNA upstream 113097 21684210 ~ 21732791 (-) False LOC120553490
XM_039791171.1 mRNA upstream 233305 21804418 ~ 21811081 (-) True LOC120553090
XR_005638087.1 other downstream 373092 21063691 ~ 21145533 (-) False ptprz1b
TU310933 other downstream 560405 20957657 ~ 20958220 (-) True G229199
TU310704 other downstream 1396286 20067036 ~ 20122339 (-) False rerg
TU310602 other downstream 1679323 19811245 ~ 19839302 (-) False etv6
TU311312 other upstream 199975 21771088 ~ 21811031 (-) False LOC120553090
TU311319 other upstream 200023 21771136 ~ 21811097 (-) False LOC120553090
TU311637 other upstream 1533647 23104760 ~ 23239573 (-) True G229716
TU311825 other upstream 2120908 23692021 ~ 23711795 (-) True LOC120553170
TU311851 other upstream 2128584 23699697 ~ 23700198 (-) True G229907

Expression Profile