RNA id: XM_039792262.1


Basic Information

Item Value
RNA id XM_039792262.1
length 3746
RNA type mRNA
GC content 0.50
exon number 10
gene id LOC120553632
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 18711014 ~ 18731666 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTAGCGGTACATGTATCGGGCTCGCTTCATATCAACCACCAGAAGTCATTCTCTTTGTGCATGTCGACGCGGTGAGTCGGGTTTGGGGATGGGTGTTATTAGGATTGACAGCAGAGACGACTAACGTTTGAAAAAATGTCCAACATCCTCGATGCGGCGTCCAAAATCAAATGGGACCGCACGGCTGCGGCGAAGCGAGCCGTGTTTCTTGCGGCTGCTGCTTACGGTATCAAAACACTGTACCCCATAATCTGCAAGCAGCTCAGCAAAAACAAAGATCCGAGGAATCATCGCCGGGTTTCAAAGGCGGAAAACGGCTCCACCTGTCTGGTAAAGACACAGACCTGTGCTGCGAATCACAAGAAGACATCTCCTGGGTTAAATGCGGAATTTTTCAAGCAGATCCTCGCACTTGGTAAAATCCTCTTCCCCAAGCTAGTGTCCAAAGAGCTCGGTTTGCTCTCCTTGCACTCGGTGGCGCTGATATCCAGGACGTTTCTGTCTATTTACGTGGCCAGCTTGGACGGAAAGATTGTCAAAACGATAGTGGAGAAGGAGCCCAAGAGCTTCATCATCCAGCTGATGAAATGGCTCCTCATTGCCATCCCGGCCACGTTCGTCAACAGCGCCATTCGGTACCTGGAGTGCAAGCTGGCTCTGGCCTTCCGCACCCGCCTGGTGAACCATGCCTACCGGACCTACTTCACCGATCAGACCTACTACCGAGTCAGCAACATGGACGGGAGGCTCGCCAACCCGGACCAGTCTCTCACCGAGGACGTAATGATGTTTTCCCAGTCGGTGGCCCACCTCTATTCTAACCTCACCAAGCCAATACTGGACGTGATGCTGACTTCCTACACGCTGATACAGACCGCCAGGTCCAGGGGGGCCAACGCCAGTGGGCCTACCCTGCTGGCCGGCCTGGTGGTCTTTGTCACGGCTAAAGTCCTGCGTGCCTGCTCGCCCAAATTCGGCAAGCTTGTGGCCGAGGAGGCTCACAGGAAAGGCTACCTGCGCTATGTACATTCCAGGATCATTGCAAATGCTGAGGAAATAGCTTTCTACAGGGGACACAAGGTGGAGATGCGTCAGCTGCAGAAGTGCTACCAGGCTCTGGCGGACCAGATGAACCTGATCCTGTCCAAGCGTCTCTGGTACATCATGGTCGAGCAGTTCCTCATGAAGTACGTGTGGAGCTGCAGCGGGCTCGTCATGGTGGCCGTGCCCATCATCACAGCAACCGGCTTCGCTGACAACAAAACAGCAGACGGGCGCACGCATGTGATGGTAAGCGAGAGGACGGAGGCTTTCACCACCGCCCGTAACCTCTTAGCCTCAGGAGCCGACGCCATCGAAAGGATCATGTCCTCCTACAAAGAGATCACAGAGCTGGCAGGCTACACTGCACGGGTCCACAACATGTTTGTGGTGTTTGAGGACGTCCAGAAGGGTGTTTACAAGCGCTCCTCTCTGTCAGCCACAACAGGAGCAGAGAAGAAGAGCAAGCCTGAGATGCACATAGATGGACCACTGGAGATAAAGGGTGAAGTGATAGATGTGGACAACGGCATCGTGTGTGAGAATGTCCCAATTATTACGCCGAATGGGGATGTCGTAGTGTCTTGCCTGAACCTCAAGGTGGAAGAGGGCATGCACCTATTGATCACGGGGCCTAACGGCTGTGGGAAAAGCTCTCTGTTCAGGATCCTCAGCGGCTTGTGGCCTGTCTACGGCGGCCGCCTACACAAACCCTCTCCTCAACACATGTTCTACATCCCTCagagGCCATACATGTCCATGGGTTCACTGCGGGACCAAGTGATCTACCCGGACTCGGTGGAGGACATGGCGGCCAGAGGCCTCAGTGACAAGGACATAGACTCCATCTTGGACATAGTCAACCTCAATCATATTGTCACCAGAGAGGGAGGCTGGGATGCTGAGCTGGACTGGAAGGACGTGCTGTCAGGAGGCGAGAAGCAGAGGATGGGCATGGCTCGGATGTTCTACCACAAGCCTAAATATGCGCTGTTGGATGAGTGCACCAGCGCTGTGAGCATCGACGTGGAGGGGAAGATTTTCCAGGCTGCTAAGGATGCTGGCATCTCTCTGCTCTCCATCACACACCGACCCTCCCTGTGGAAGTACCACACCCACCTGCTGCAGTTCGACGGCGAGGGAGGCTGGCGCTTCGAGCATCTGGACACGGCGACGCGCCTCTCCCTCACCGAGGAGAAACAGCGGCTGGAGGGCCAGCTCGCCGGCATTCCCGAGATGCAGCATCGCCTCAACGAGCTCTGCAAGATCCTGGGAGACGACTCTGTACTCAAAACAGCcgaggagtgagagagagagagagagagaggggggggaagagaagaagtgggggaggaggagaagagtgtGGGAGACGAAGAGGCAATGAAAGAATGAGAAATCTGTAGGGGTTTGTTAGTGTGTAGTTTTTTTCAGGCTTAGTTTTTGTCGTTGCTGCTTGTTTTTGCTCCGAGCCTCTCCCGTTAAAGCAAGAGAGCTCTTAATGCCAGCCAGTCTTTCAGCTCTCCTTTCTCCACTCCCTCTTCTTTTAATCTCTCCTTCGCCCCACTCCAACCCGAGAagtggagggggggaggagagtGAATTCACAAGtattatccccccccccccttcttacGCACATTGACTGCATTGTAGATTTGGAATGTTTGGTTTTAGCGTACATCATTCTCAAAATCAATTTGCCACCGGCCAAAGTGGCAAAACGGATCAAATCCAAATTAACCAAGataatttatatgttttatagCACTTTACTCTGCTTTTAGAGGgctgtttctgtttgttgtgAAACAAGGTGATAGCTGCATTTTAGCTGGAAAACTTTTAATATAGAACCACTTAAAAACATGTCCGAAGCAGTATTCCACGCCCAGTATACTGGGTTGTGCAGGATCCACATTTGTCATACTTCAGCAGCAGTAGATTTGAGCTTTTACTTGACTTAATGTGACCTCCTTAGTTGCCAGAGGTCAAAATAGACTATTTTTCAAGCTATCACAATATGCCTTTGTTTGATTTTGTGTATCTAGCCGCAGTACAATCCCTTTCCTTATACCTCATCTTAGCCCTTGTTAGGACTCCTTGAACCACTAATATAGGCTCCGTTGCAGACAGCAAAGAAAAAGAGCCCATCTGGGGCTATAATTAGATGATTAGTGATGCACGTCTGACTCCAGAACTATTAGGTTTCTGGTTTATTGAACAAATACAATGAGCTAAAGAGGCCCTCTgcaaaaagaagagaaagcaGAAAGCAAGCTGACCCTGGTAGTCTGGTCTATGAAAAGTctcatatatatactgtaaaaggATGGACAGGTAGACATTCAGACTAACTgtcagatacacatacacacactggccACCTGTTCAACAAATTTGGTTATCTGTATGCCTGCTGGGAATCTGCTTTGTCAGCAGTTCTCTGTGGCTCCTTCTGAGCCTGTTTAGATGCAAATAATCGCATGATGGCACTGGACAATGGGCTACAATACATTATTCTAATTTACTTatccctcgtgttgtcttcccatcgacctgcaactttgtttttctgagtcaaacttttaaatgaaaaaccttttatcaacgttttggtcgtcttttttgacaattttgtgGCTTCCCCcggtgtttttgtcacttttttcaacgtttgtcGACCTTTTCTGAGCCTTTgaag

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG:

id description
K05676 ABCD2, ALDL1; ATP-binding cassette, subfamily D (ALD), member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310256 lncRNA downstream 151735 18558601 ~ 18559279 (-) True G228683
TU310257 lncRNA downstream 152505 18556053 ~ 18558509 (-) True G228684
TU310249 lncRNA downstream 341270 18363259 ~ 18369744 (-) False gramd4a
TU310251 lncRNA downstream 364017 18304585 ~ 18346997 (-) True LOC120553191
TU310292 lncRNA upstream 6730 18738396 ~ 18739510 (-) False LOC120553633
TU310303 lncRNA upstream 149495 18881161 ~ 18884075 (-) True G228713
TU310334 lncRNA upstream 161974 18893640 ~ 18975820 (-) True G228731
TU310370 lncRNA upstream 282989 19014655 ~ 19022242 (-) True G228759
TU310342 lncRNA upstream 430351 19162017 ~ 19270336 (-) False sox5
XM_039791682.1 mRNA downstream 5777 18667121 ~ 18705237 (-) False LOC120553351
XM_039791680.1 mRNA downstream 5777 18670449 ~ 18705237 (-) False LOC120553351
XM_039791681.1 mRNA downstream 5777 18670579 ~ 18705237 (-) False LOC120553351
XM_039791679.1 mRNA downstream 5777 18670579 ~ 18705237 (-) True LOC120553351
XM_039791861.1 mRNA downstream 58324 18561096 ~ 18652690 (-) True LOC120553458
XM_039792263.1 mRNA upstream 6842 18738508 ~ 18823090 (-) True LOC120553633
XM_039791407.1 mRNA upstream 296943 19028609 ~ 19270239 (-) False sox5
XM_039791408.1 mRNA upstream 296943 19028609 ~ 19270239 (-) False sox5
XM_039791404.1 mRNA upstream 296943 19028609 ~ 19270239 (-) False sox5
XM_039791405.1 mRNA upstream 296943 19028609 ~ 19270239 (-) True sox5
XR_005638136.1 other downstream 289607 18369675 ~ 18421407 (-) False gramd4a
TU310229 other downstream 610019 17830672 ~ 18100995 (-) False tafa5a
TU310227 other downstream 783309 17830672 ~ 17927705 (-) False tafa5a
TU309971 other downstream 1408816 17295122 ~ 17302198 (-) True G228465
TU309744 other downstream 1887582 16748842 ~ 16823432 (-) True G228291
unassigned_transcript_1496 other upstream 706851 19438517 ~ 19438599 (-) True trnal-cag_18
unassigned_transcript_1497 other upstream 711566 19443232 ~ 19443314 (-) True trnal-cag_19
unassigned_transcript_1498 other upstream 715355 19447021 ~ 19447103 (-) True trnal-cag_20
unassigned_transcript_1499 other upstream 716398 19448064 ~ 19448146 (-) True trnal-cag_21
unassigned_transcript_1500 other upstream 720322 19451988 ~ 19452073 (-) True trnal-cag_22

Expression Profile