RNA id: XM_039792270.1


Basic Information

Item Value
RNA id XM_039792270.1
length 3039
RNA type mRNA
GC content 0.46
exon number 6
gene id pim3
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 17514539 ~ 17519517 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCCAAAGCTCAGACAGCGGCCACTCTTCAGGACAATAACACGCTGCGGAGGCCCTTTAAACACGTTCTGCTGTCGGCTACGGCTATAATACAGATCGAAGTGTCCGTGATTTTTGTTACTTAAGAGGACTGTTTTCGTTTCTTGTGCTTGAGTCGAGACACAGAAGTCAAATTTCATGCCGCTTTTCGGGAAACTGTATACCATTTCACGGTCGTGAGACGACTTTGACGGGTGCGGTGCAGTGGACTTGGCGCACTGCTGGATTGGATATATTATTCGCTTGAAGCCAAGACGGTACACCCCACCATTCTGCGCCTGAATTCACTCCTCTGCTGGTTCTTCTGACTCTCAACGGGTGTATCGGGATCGTCTTCGCCGGCTTTTCAGCGGGAATATGTTGTTGTCAAAGTTTGGTTCATTTTCGCACATTTGCAATCCTTCTAGTATGGACCATCTACCAGTGAAAATACAGCTCCAGTCGGTTAAAGTGGAAAAGGAGTCCTTCGAAAAGGTTTACCAAGTGGGATCCGTGCTGGGCAGCGGAGGATTCGGAACGGTGTACGCCGGCAGCCGGATCTCTGATGGCGCACCGGTGGCTGTGAAACATGTTGCAAAGGAGAGGGTGACCGAGTGGGGAACAATTAACGGGGCTATGGTGCCTTTGGAGATCCTGCTGCTAAAGAAGGTCAGCTCGTCGTTTCGCGGAGTTATCAAATTGCTGGACTATTACGAGCGGCCGGACGGTTGGCTGATCGTTATGGAGAGGCCGGAGCTCGTCAAGGACCTTTTCGACTATATCACCGAGAAGGGCGCCCTGGATGAGGACACGGCTCAGGGATTTTTCCGCCAGGTTCTGGAGGCGGTCAGACACTGCTACAGCTGCGGCGTAGTACACAGAGACATCAAAGATGAAAACCTGCTGGTGGATCTACGCACCGGGGAGCTCAAGCTTATTGACTTTGGCTCAGGGGCGATTCTCAAGGACACAGTCTACACCGATTTCGATGGTACAAGAGTGTACAGCCCACCAGAGTGGATCCGCTTCCATAGATACCATGGTCGCTCGGCGACGGTGTGGTCGCTAGGAGTGCTGCTGTATGACATGGTGTGCGGAGACATCCCCTTTGAGCAGGACGAGGAGATCCTCAGAGGGAGACTGTACTTCAGGAGGAGGGTTTCAGCCGAGTGCCAGCAGCTGATCAAATGGTGCCTGGCCCTGCGGCCTTCAGACCGGCCTACACTGGAGCAGATTTGCGACCACCCTTGGATGAGGGCGACGACGAGCGAGTCACCCAAGTCACAAGAGGAGCCGGTCACCACCAGTGAGATCCGCCTCAGGACCATCGACACAGACTCTTCGTCAAGTACGAGCTCGAGCAAGGAGAGCCTCTGAGGACGGCTCTGATGGACCCAAAAGACTTTCTGGGGAAAGAAGGGGTGTTAGCTGGAGGGGGTGATATGGACTCGAGGCCGGAAGCCTGTAGCCCAACAGTGGCTGGGCGCTTGACTCAGCTGCTCCAGCaagaaaaatgtactttaatTTTTCTCTTTTGTAGGGAATTTCTAATTTATTACTATTTGTTCTTCCTTATCTTATTTTCCccatcctccttttttttttttttcttcagttgaTAATACTTGTTTCCTATACGggaacttttcttttttttctttttttggggcggTCTTACCAGCACTATTTATTCTCCCCTTccctcttttttaaattttattttacttgttttGTTACTAGGCTGGTATATGCAGCTGGCAAGACCCTCCTATTCAAACATGGCTGCTCTCATAGAGCTTggagaaaacctttttttatttaaatgttttaattttgattttgtagtgccttttttttttttttttttttttttctcggaAAGCTGCTTTTCTGGGGGGCTTTCATTAACAACTCTATTTTTTGGGTTTGCCCGTGGCCTGGTGGGTAAGTTGCCTATGCTCTGATGGAATGGGGGAGGAGGTTGATCCTCTCCATCACTGTAAGCCAACAACCCACAGCCGAGAGGCTAAGATAGCATtatatggagagaaagaggTGGGGGCTCTTCCTGACAATGGAATACTTGAAAAACACTCGACTCAACTGTGTGTCGCTCTCTTTAACGCTGCTCAATCACTCTATAGCCTGAACAGGTGTTTGGAAACTGGATCCTGTCTTTTCTGAATGTCTACAAAATGTCAACACACAtacccccccccatccccaccccacacacacacacacacacacacacacacacacacctttttctctccctcttatCCCATGCCTGTTGCAGGGTGTGTGGCCCtcttgacttttcttttttgcctCCCGCCATCTCACTGCTTGACACTACATGGCCCCCGCCCCTGGCCTCCCTCAGGGTTTGGGGTGTGAAATGCACAATCAATGCAATATTCATGGACTcaattatgtatttttgttttcaacAAATATTGTACAgcgtgtattttattttttcctttttgtgtgtacattatttttcctcCCCGTTtgcatttaatttatttgtaaaCATGTAGACATTCCACACTCTgtggctatttatttatttattgtctatGCTTAAAATCCCCTCTAAATTTTTTGCATATCCTACTCGGCCTTTGGTTTGCATTCCTATAACTTATTTTTACAtttcgcctttttttttttagatgtggAGAATGCACTGAAGCAGTTGTCGATGTAAAGCAGAATAAAACAAGTTTACTTCAATTTGGAAAGAGCATTTGAATGTTATTTAACTACTTTGAAAAGTCTGTTGGTAATGTTGAATTGCTAATTATTGGAAGTCCATCTGGTGTTTGTACTGTCAAGATTAATTTTGAATTCTATGGAAAGCTAAACTACGGCTGGAACAGCTTTCGTAGTTGTCACACAGCCTCATATTGGAGACCTTTCAGTTTAGCTGTGTGACTTGTGGCTGTGAAGGATGGATATTGCTATTTTTTGATACAAAAGTTTCAATTAAACTCCCATTTTTTTATGTACAGAAA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08807 PIM3; proto-oncogene serine/threonine-protein kinase Pim-3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638182.1 lncRNA upstream 213519 17299723 ~ 17301020 (+) True LOC120553531
TU309875 lncRNA upstream 308899 17187926 ~ 17205640 (+) True G228392
TU309867 lncRNA upstream 376188 17137271 ~ 17138351 (+) True G228384
XR_005638158.1 lncRNA upstream 393955 17119099 ~ 17120584 (+) True LOC120553376
TU309855 lncRNA upstream 399196 17113825 ~ 17115343 (+) True G228375
XR_005638205.1 lncRNA downstream 82675 17602192 ~ 17790439 (+) False LOC120553790
XR_005638203.1 lncRNA downstream 82676 17602193 ~ 17790439 (+) False LOC120553790
XR_005638204.1 lncRNA downstream 82677 17602194 ~ 17800247 (+) False LOC120553790
XR_005638202.1 lncRNA downstream 82677 17602194 ~ 17790439 (+) False LOC120553790
TU310024 lncRNA downstream 82689 17602206 ~ 17790920 (+) False LOC120553790
XM_039791852.1 mRNA upstream 165580 17331520 ~ 17348959 (+) False il17rel
XM_039791851.1 mRNA upstream 165580 17335399 ~ 17348959 (+) True il17rel
XM_039791966.1 mRNA upstream 216885 17276013 ~ 17297654 (+) True LOC120553489
XM_039791967.1 mRNA upstream 216885 17276013 ~ 17297654 (+) False LOC120553489
XM_039791968.1 mRNA upstream 216885 17284759 ~ 17297654 (+) False LOC120553489
XM_039791143.1 mRNA downstream 51385 17570902 ~ 17576427 (+) True alg12
XM_039791135.1 mRNA downstream 65060 17584577 ~ 17598312 (+) False brd1a
XM_039791138.1 mRNA downstream 65061 17584578 ~ 17597141 (+) False brd1a
XM_039791137.1 mRNA downstream 65061 17584578 ~ 17596629 (+) False brd1a
XM_039791136.1 mRNA downstream 65062 17584579 ~ 17598477 (+) False brd1a
TU309802 other upstream 591716 16919663 ~ 16922823 (+) True G228335
XR_005638118.1 other upstream 683296 16771058 ~ 16831243 (+) False cald1a
XR_005638117.1 other upstream 683296 16771062 ~ 16831243 (+) False cald1a
XR_005638140.1 other upstream 2316709 15168604 ~ 15197830 (+) False LOC120553256
TU309001 other upstream 3509690 14002363 ~ 14004849 (+) False LOC120553485
unassigned_transcript_1495 other downstream 70574 17590091 ~ 17590163 (+) True trnak-cuu_15
TU310117 other downstream 1010648 18530165 ~ 18531168 (+) False srr
TU310402 other downstream 1890973 19410490 ~ 19413704 (+) True G228784
unassigned_transcript_1503 other downstream 1939566 19459083 ~ 19459154 (+) True trnaq-uug_5
XR_005638131.1 other downstream 2112430 19631947 ~ 19808412 (+) False LOC120553210

Expression Profile