RNA id: XM_039792272.1


Basic Information

Item Value
RNA id XM_039792272.1
length 2588
RNA type mRNA
GC content 0.48
exon number 15
gene id dclre1c
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 7089340 ~ 7100004 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAACAAACGACGAAGAAGAGTCACTGAAATTGATGGGCGGGACAAACAAACAGGCGATGTCAACAAAATAGCTGTCTGTCTATCCGCTGGAAACAATGCTTGATTAATTTAACACGATACCACCAACCGGTTCCTCgcattaacagtctatggttccgCGTAAAGATGAGTTCATTTGCAGGTCGAATGAAGGAGTATCCCACCCTTTCTCTGGACCGGTTCGACCGGGAGAACTTACATTCCCGGGCATATTTCCTCTCCCACTGTCACAAAGATCACATGAAAGGACTAAAAGGACCAATACTGAAGAGAAAACTGCAGTTCAGTCGTACAGTCAGGCTTTACTGCTCCTTCGTGACCAAAGAACTTCTGCTGAGCAATCCCAAGTACGCTTTCTGGGAGGAATACATTGTTCCTTTAGAGCTAGAGAGCCCAACTCAGATATCTCTGGTTGACGAGGCATCTGGAGAGAAAGAAGAGATTGTGGTCACGTTGCTTCCTGCAGGCCACTGTCCCGGCTCTGTTATgTTCCTGTTTGAGGGTTCCCGTGGAAACGTTCTGTATACAGGAGACTTCAGGTTGGCTGCTGGTGACGTCTCGAGAATAGAACATCTGCACTCTGGCAGCAGAGTGAAGGATATTCAGAGTGTTTATCTGGACTCCACTTTCTATGACCCACGATTCTACCAGATTCCTACTCGGgagGTCTGTCTGAACGGTATCTCAGAGCTTGTTGGGAGCTGGATCAGTAAGAGTTCATATCATGTTGTGTGGCTCAACTGTAAAGCTGCGTATGGATATGAATATCTGTTTACCAACCTGGGAGAGGAGTTcaacacacagATTCATGTCAAAAATCTGGCGATGTTCAAGAAGATGCCGGAGATCCTGAACTACGTGACGACTGACCGAAGGACACAGATCCATGCCTGTCGACACCCTAGGGATGAGGAGTTTTTCCAAGGCAGCCGGCTGCCGTGTGGCTGCACAGCCTCTGACGGGACTCCTCTTAGTATCATCAGCATCAAACCGTCCACCATGTGGTTCGGAGAGAGAATGAAGAAAACCAACGTTATAATAAAaaCAGGAGCCAGTTCCTTTAGAGCCTGCTTCAGTTTTCACTCCTCCTACTCAgagATTAAAAACTTCCTCTCCTACCTCCAACCAGTCAACATATACCCCAGTGTTATCCCTATTGGTCGGACCCTCACTGAAGTTACACAAATGCTGAAGCTGATGTGTAGAAACCAGTCTGATCAAGCAGCGTCTATATACAAACCTCTGGGAGTCCTCAAACGCGGCATAGTGGAGCAACCTACATACAATTCAGACAGCGATGACGGGCTGTTTGAGCAGCTGGACCTGGCACCAGTGAGGAAGAAGATGGCGCTGAACCGAGACACAAAAAACGTGAAAGCTCAGAGTCCTCAGAAGACAGCGGCCCCTGTGTCTGTGGAGGAGTCTTTCCCTCTGACGGTCGCAGACGCGCAGCCTGTCGCTCGCAACTATGTGGACTGCACCGAGTCcaatgatgaagaggaagatgaggggggggaggaggaggagaatgagGGAAAGGAGGATACAAAACTGACTAAGGAGGAGGTGAACAGGACGATAAAGGGAACTGAGAAAAAGGTGATTGAGGTCGAAGGAAGTGGCTCCTCTAATCCTCCGAAATGGGAGGACTTCTTCACTACGGAAACGCTGACTGACAGCCAGAACAGCCTCACCAGCCAATTACAGTCCTGCTGCTCTGTCCCGAGCTCCTCCCCCTCTAAAACGACTGGTTCACAGACCCCAGATCTGTTCAGCGATGAGGAGGAAACCCCCGATAACTTCAGTCTGACCCTGTCCGCCTCTCTGTCAAATCATTCCTCCCAGAACCAGGACTCGTATTTACCTGACACTCTGATCCTCCAAACAGAGCAGAGGGGGCGGGAACAAGGAGACTCTAGGACCAATACCGTTTCTCTGGAGAAGGAGAGCAACAGCCAAAACATCCAATCAGAGCTGGAAGAGCTCTCAGAGTCTCAGGCCTCGTCGGACTTTGATATTCCCTGCACGCCAGAGTCCAAAATACCACAAACTGATGAACTGTCGCAGTTGTACAGGAAGCTGGCGTCAGGAGACGAAGTTGTCATCAGAAAGGGAAGTCAGGGCTCCATGTGAAGGAATGTTAAAGGACATTTTTGGTGGATTTTATCCACCTATATGCTGCAAGATTACTGGTTCATGTGTGTGATAAGCACATAACTTCATGAACTTCTATAATACCTTACATGCCTTAAAGTGAGACCATTCCTCTCCAGTCTCAGTCGAACCTCCAAACCACACAAACCTCAGTATGTAAAGTAACCCACACAACATTTATTCCAATGCACTTTAAGTTCCCCGGTGCCCTACATACATTAATGCACCTGTGCACTGCACAGCTGACGCTCCATTTTTGTTGACAGTTTGTGGTTTGTTCTGTTAAACATTTCAAGGATCAAGTAGGTGACGTTTTTGTATCAAATCAGAAATCTTTGTGTCCTGaaccaaattaaaaatatttcaaataaaCAGCATTTTAGTAAACCTTGAAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K10887 DCLRE1C, ARTEMIS, SCIDA; DNA cross-link repair 1C protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306694 lncRNA upstream 402715 6682718 ~ 6686625 (+) False prkcq
XR_005638192.1 lncRNA upstream 588280 6429094 ~ 6501060 (+) True LOC120553621
XR_005638108.1 lncRNA upstream 799441 6183044 ~ 6289899 (+) True LOC120553126
TU306637 lncRNA upstream 991432 6097678 ~ 6097908 (+) True G226097
TU306625 lncRNA upstream 1169926 5919094 ~ 5919414 (+) True G226085
TU306925 lncRNA downstream 57486 7157490 ~ 7157887 (+) True G226292
TU306949 lncRNA downstream 113388 7213392 ~ 7216386 (+) True G226306
TU306966 lncRNA downstream 167505 7267509 ~ 7268219 (+) False G226316
TU306965 lncRNA downstream 167823 7267827 ~ 7268758 (+) True G226316
TU306967 lncRNA downstream 169100 7269104 ~ 7270753 (+) True G226317
XM_039791779.1 mRNA upstream 16337 7051855 ~ 7073003 (+) True cd9b
XM_039791780.1 mRNA upstream 16337 7059285 ~ 7073003 (+) False cd9b
XM_039791507.1 mRNA upstream 77060 7000299 ~ 7012280 (+) False LOC120553268
XM_039791510.1 mRNA upstream 77061 6976407 ~ 7012279 (+) False LOC120553268
XM_039792095.1 mRNA downstream 15958 7115962 ~ 7144005 (+) True lamb1b
XM_039791418.1 mRNA downstream 140848 7240852 ~ 7255885 (+) True vezt
XM_039791419.1 mRNA downstream 140848 7240852 ~ 7255885 (+) False vezt
XM_039791420.1 mRNA downstream 141345 7241349 ~ 7255885 (+) False vezt
XM_039791597.1 mRNA downstream 157266 7257270 ~ 7267450 (+) True metap2a
XR_005638175.1 other upstream 1716137 5283759 ~ 5373203 (+) False abcc9
XR_005638176.1 other upstream 1716137 5283759 ~ 5373203 (+) False abcc9
XR_005638177.1 other upstream 1716137 5283759 ~ 5373203 (+) False abcc9
TU306390 other upstream 2431371 4657444 ~ 4657969 (+) True G225894
unassigned_transcript_1479 other upstream 2892525 4196705 ~ 4196815 (+) True trnal-caa_19
unassigned_transcript_1480 other downstream 47265 7147269 ~ 7147340 (+) True trnaw-cca_35
TU307013 other downstream 218536 7318540 ~ 7321049 (+) False snrpf
XR_005638075.1 other downstream 223066 7323070 ~ 7332259 (+) True amdhd1
TU307011 other downstream 296490 7396494 ~ 7400399 (+) False nrip2
TU307294 other downstream 1326687 8426691 ~ 8432697 (+) True rps16

Expression Profile