RNA id: XM_039792277.1


Basic Information

Item Value
RNA id XM_039792277.1
length 2917
RNA type mRNA
GC content 0.56
exon number 19
gene id braf
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 26386815 ~ 26427044 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACACCTCCTAAAcagaatattttcattttaacaatATTGATAAGTATCCACTATATGAAATAACACGTCAGTGAATGATGACCATATTAGCCTAAATAAATATGGTTAAAGTTAAATACTACTAAAGATGAGAGCATGCTCCTGGTGCTTCCTGGCCCTAATCATTGTGTACCAAGTTAACTGGTTGTGTGCCAGCCATCCAGTCCAGAGGCGAGGGAGCCCCGTCCTGcgtctctgtctccccctcctGTCCTCAGCACCAGCCTGCGTTTCCCTCTATTATTTTCCACTCAGTTTCTCGCAGTTTAAAATGGCGGCGTTGAGCAGCGCCGAGTCCCCACCGCCCGTCTTTAACGGAGACACCGCGGAGTCGGAGCCGGGCAGGGAGCGGGGCCTCGAGGAGCTGGGTGCCGGGCTGGACTCCTCGTGCACGTCGGGGATCCCCGGAGGTCCGCAGGATGAGGAGATCTGGAATATCAAACAGATGATAAAGTTGACACAAGAACACTTAGAGGCCCTTCTGGACAAGTTTGGAGGAGAACACAACCCTCCTTCCATATATCTAGAGGCCTATGAGGAGTACACCAGTAAGCTGGACGCCCTgcagcagagggagcagcagcTGCTGGAGGCCATGGGCAACGGGACAGACTTCTCCTGCTCTCCGTCGGCCATGCCAGCCCTCCTGGAGGTCAAGATGGTAGGCTGTGGGGTTTCAGGGGGGGCCCAGGCCTTTCCCTCAACGCCCAACACCTTGGCTGTGCTGCAGACGCCCGCCGACGCCAGCCGAGCCAACCCTCGCTCCCCCCAGAAGCCCATCGTCAGGGTCTTCCTGCCCAACAAACAGAGGACCGTGgtgcCGGCCCGCTGTGGGATGACTGTGAGAGACTCACTGAAGAAGGCTCTCATGATGCGAGGCCTCATCCCAGAGTGCTGTGCAGTCTACAGGATACAGGACGGAGAGAAGAAGCCGATTGGCTGGGACACGGACATCTCCTGGCTGACAGGAGAGGAGTTGCATGTCGAAGTGCTGGAGAACGTGCCGCTCACCACACACAACTTTgtGAGGAAGACCTTCTTCACGCTGGCCTTCTGTGACTTCTGCAGAAAGCTGCTGTTCCAGGGTTTCCGCTGTCAGACCTGTGGCTACAAGTTCCACCAGCGCTGCAGCACCGAGGTTCCCCTCATGTGCGTCAACTACGACCAGCTAGACTTGTTGCTTGTGTCCAAGTTCTTCGAGCATCACCCGTTCACCCAGGAGGAGGTCTCGTCGGAGGGAACCACCCCTGTGTCCGAGGCCTGTCCATCACTCCCCCCATCCGACTCCACCGGGTCTATATGCCACGCCACTGTGTCCCCGTCCAAGTCCATACCCATCCCACCCAGTTTCCGGCCCAACGAGGAGGACCACCGCAACCAGTTTGGCCAGCGGGACCGCTCCTCCTCTGCCCCAAACGTCCATATCAACACAATCGAGCCGGTCAACATCGATGACCTGATTCGGGATCAGGGCTTGCCGAGGTCCGATGGAGGCTCCACCACAGGGCTGTCGGCCACGCCCCCCGCCTCTTTACCTGGCTCTCTGACCAGCGTAAAGGTTCCGCAGAAGTCGCCGTGCCAACAGAGGGAGCGCAAGTCGTCGTCCTCGTCTGAGGACCGCAATAAGATGaaaaccctgggGAGGAGGGACTCGAGCGACGACTGGGAGATCCCCGAGGGCCAGATCACTCTGGGCCAGAGGATCGGCTCTGGCTCCTTTGGAACTGTCTTCAAGGGGAAGTGGCATGGTGACGTGGCAGTGAAGATGTTGAACGTCACAGCTCCCACACCGCAACAGCTCCAGGCCTTCAAGAACGAAGTGGGAGTCCTCAGgaAAACGCGTCATGTGAACATCCTGCTGTTCATGGGCTACACCACCAAGCCTCAGCTGGCCATCGTCACCCAGTGGTGCGAAGGCTCCAGTCTGTACCACCACCTGCACATCATCGAGACCAAGTTTGAGATGATCAAGCTGATTGACATCGCCCGGCAGACCGCTCAGGGCATGGATTACCTGCACGCCAAATCCATCATCCACAGAGATCTGAAGAGCAACAATATTTTCCTCCACGAGGATCTGACGGTGAAGATCGGGGACTTTGGTCTGGCTACAGTCAAGTCCCGCTGGAGCGGCTCGCACCAGTTTGAACAGCTGTCTGGCTCTATCCTGTGGATGGCTCCGGAGGTGATCCGGCTGCAGGACAAGAACCCCTACAGCTTCCAGTCCGACGTCTACGCGTTCGGCATCGTGCTGTACGAGCTGATGTCAGGAGCACTGCCCTACTCTAACATCAACAACCGAGACCAGATCATATTTATGGTAGGCCGAGGTTACCTGTCTCCTGACCTCAGCAAGGTGCGCAGCAACTGTCCAAAGGCCATGAAGAGACTGATGGCCGACTgcctgaagaagaagagagaggagcgGCCTCTCTTCCCTCAGATCTTGGCGTCCATTGAACTGCTGGCTCGCTCCTTACCCAAAATCCACCGCAGCGCCTCGGAGCCTTCGCTAAACCGAGCCGGCTTTCAGACGGAGGACTTCAGCTTGTACGCTTGCGCCTCGCCCAAAACCCCCATCCAGGCCGGCGGCTATGGGGAGTTTTCTGCATTTAAGTAAGTGCTGCAGATCCCACCAGTCCATCCCTCGTCACTTCTCCAAAGTCTCGTGTCCATGCAGTGGATTCATTCAttactgaaaaaaaactgaaaaaaatagtCTCAAAGAAcgtgcttttttttcccttcctctGTCCACCTGAAGAAGGCAGCCTCACTGGAGTCCTTCAAACAAACGCTGTCCAGCACAAACGGCCACAGCGGCGGACACAACTCAATTaggaaaaaaatgaagaaaaaaaaaaaactcttgaaTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312737 lncRNA upstream 3162 26382691 ~ 26383656 (+) True G230597
TU312745 lncRNA upstream 3162 26382691 ~ 26383656 (+) False G230597
TU312701 lncRNA upstream 127687 26258925 ~ 26259131 (+) True G230563
TU312693 lncRNA upstream 185591 26200247 ~ 26201227 (+) True G230555
TU312661 lncRNA upstream 206802 26179543 ~ 26180016 (+) True G230525
TU312750 lncRNA downstream 1390 26428434 ~ 26432122 (+) True G230600
TU312785 lncRNA downstream 186908 26613952 ~ 26614172 (+) True G230635
TU312795 lncRNA downstream 253820 26680864 ~ 26681098 (+) True G230645
TU312811 lncRNA downstream 453463 26880507 ~ 26880987 (+) True G230658
TU312799 lncRNA downstream 536118 26963162 ~ 26971853 (+) False LOC120553759
XM_039792387.1 mRNA upstream 6961 26372714 ~ 26379857 (+) False mrps33
XM_039792386.1 mRNA upstream 6961 26372715 ~ 26379857 (+) False mrps33
XM_039792384.1 mRNA upstream 6961 26374205 ~ 26379857 (+) False mrps33
XM_039792385.1 mRNA upstream 6961 26374211 ~ 26379857 (+) False mrps33
XM_039791359.1 mRNA upstream 132883 26222790 ~ 26253935 (+) False cnot4b
XM_039792455.1 mRNA downstream 266312 26693356 ~ 26968932 (+) True LOC120553759
XM_039792298.1 mRNA downstream 592318 27019362 ~ 27044417 (+) True aebp2
XM_039792299.1 mRNA downstream 592328 27019372 ~ 27044417 (+) False aebp2
XM_039791355.1 mRNA downstream 619022 27046066 ~ 27051282 (+) True ndufa5
XM_039791354.1 mRNA downstream 642033 27069077 ~ 27071984 (+) False LOC120553194
TU312731 other upstream 5709 26372736 ~ 26381109 (+) True mrps33
TU312732 other upstream 5709 26372736 ~ 26381109 (+) False mrps33
TU312620 other upstream 340137 26038287 ~ 26046681 (+) False arhgef39
TU312157 other upstream 1608560 24620812 ~ 24778258 (+) True G230148
TU312075 other upstream 2073880 24309936 ~ 24312938 (+) False LOC120553083
XR_005638128.1 other downstream 642033 27069077 ~ 27072552 (+) False LOC120553194
TU313012 other downstream 1175961 27603005 ~ 27603702 (+) True G230842
TU313087 other downstream 1514277 27941321 ~ 27947473 (+) True G230904
TU313169 other downstream 1630687 28057731 ~ 28058218 (+) True G230975
unassigned_transcript_1530 other downstream 2043762 28470806 ~ 28470878 (+) True trnat-ugu_41

Expression Profile