RNA id: XM_039792280.1


Basic Information

Item Value
RNA id XM_039792280.1
length 1921
RNA type mRNA
GC content 0.39
exon number 8
gene id LOC120553643
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 15346999 ~ 15356337 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACGCCCATGCACAAACACCAAGGGGCTGTGCGCGCAACAAGATGAGAAGTTTCTCTCAGAAACACACATCTCCATAGCATGCGCACTTCTACTTAGGAAAACTTTAAACGGTATTACAAATATTGACGGCGAGTTTAAGCGCAACAACATGGGGAGAGTGAACGTCTGTTTGAAGCGAAGTTACATTATAGTGATAAGTTTGATCGCgGTTGGCAGTGTTTTGCTGTTGGGATGCACTCTGTTCAACCACGGATACTACTACCAAAATGAAGAGATGGAAGAGGCGTTTCTTACAGGCATTCATGCCTTGTATATTATTTCCACCATAACTCTGGCCTTGACCATCATTGGTGTGTATGGTGCCTGCAAAGAGAAGAAGTGGGCGCTTATAACGTTTGCAGTTGGAATGATCCTGGGCAGTCTGTTCATGATTTTCATAGAAGTTGTCGGACTGGCTGTGCGACCAGAGATGGCTGAAGGACTAAAGAGCCAATACCTACATATGCTGCCGCTAAATAATGCTAGTGAGAGCTTTATAGACAACATGAATGAAATACAGAGGCATTTGCAGTGTTGTGGATTGGATCAGGGCTACCTGGATTGGGACTACCACATCCCAGAATCCTGCCTATGTGATGAAGAGTCCACTAATCCATGTGTGGCAGCTCCTAGAGACAGCAGTCTGTTTGAGCACATGGTCAATGATCAGCCCATCATGATTTATAATGagATTTTGTCAGTGGTGTTGTGCATCTTCATCTTATGTCGGTTGAGTAAGAAGGAAGATATCCCTGTAGTGGTCTACAGTCCAGAGGCTAAAGCAGGCAACTACACCACTTTGACAGACGCTGCAGAGTACACCTGATTGGGATTGGTACAATACATTGTGTTTTTATGATGTTTGAATATATCAGAAGTTGCTTCCAACAACTGAAGTTGCATATTGTTTTTCTTAAATGATTTGTTTGGGtagtatgtatttgttttggttttgccaTTTAAACCATTAAACCTTTATTCATTTTTGTATCCCGGAAGATGCATGTTTTTACAATGGTAAAGTTATGGGCTATGGTCAGAAacagcacatactgtactgtgaataagtattttctttgttttaaataaattagaTGAAAACTAAGATACATACACGGCATATTAAGTCTGAGACCTACACCCTTCTGCTACATAAGATATACAGTAATACTGTAGCGCATCTCTTTCCACTGTTTTTAATGGACATTAAATGTGTGTGCtaagcaataaatacataaacttTTAGAGTGGTATTTTCATCCCAGATTAGAATCATAatgtaagacctttttaagCCAAGAAGTAAGCAGGAAACTGAAGCGTATTGTAAGAGGTGGAAATAGAGTAAATTCAATTGAgatggttaaagaaaatgtttttttttttttatagcactGATGAAGATATGACTGCAGAAATATTTAGGTTATGAAAAACCTAAATATTCCAAACGCTctacttctgggattgctccgttgccttCGGAAATTCCGCCAAATTTaactcttttcagccggatgtccgttaccttccatttagtttgtgttggaattttaaactctggtggatttatgaggactatggttaactgctcctcagatctctgcagggtaaatccagacagctagctagattatctgtccaatctgagttttctgatgCACGACCaagaacatacacatgttccaccaaaacaagtttcttcccagggctgtttttatatttgcattGTCAAAACTCTAAATACAATCCTCACACCACGTGGTACATTCAGCACACCACTCTAAGTGACCTGCAAAAGGTGATTACTCAATCAAAAGAAtaaacttgttttaaatgtaaataaatccatCAATGAATAAATGTGTCATCACAACAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309426 lncRNA downstream 1355 15320833 ~ 15345644 (-) True G228075
TU309428 lncRNA downstream 15843 15325485 ~ 15331156 (-) True G228077
TU309417 lncRNA downstream 55776 15290874 ~ 15291223 (-) True G228067
TU309416 lncRNA downstream 56506 15290239 ~ 15290493 (-) True G228066
TU309413 lncRNA downstream 65330 15281466 ~ 15281669 (-) True G228063
TU309475 lncRNA upstream 136017 15492354 ~ 15493417 (-) True G228109
TU309482 lncRNA upstream 138367 15494704 ~ 15510782 (-) False G228111
TU309481 lncRNA upstream 138658 15494995 ~ 15510782 (-) False G228111
TU309483 lncRNA upstream 143499 15499836 ~ 15510782 (-) True G228111
TU309501 lncRNA upstream 174794 15531131 ~ 15531439 (-) True G228120
XM_039792209.1 mRNA downstream 8902 15331450 ~ 15338097 (-) True LOC120553603
XM_039791479.1 mRNA downstream 89010 15204448 ~ 15257989 (-) False ccdc146
XM_039791478.1 mRNA downstream 89011 15204448 ~ 15257988 (-) True ccdc146
XM_039791364.1 mRNA downstream 180767 15141912 ~ 15166232 (-) True nampt1
XM_039791363.1 mRNA downstream 206683 15128948 ~ 15140316 (-) True sypl1
XM_039791544.1 mRNA upstream 115938 15472275 ~ 15491287 (-) False pphln1
XM_039791542.1 mRNA upstream 115938 15472275 ~ 15491287 (-) False pphln1
XM_039791543.1 mRNA upstream 115938 15472275 ~ 15491287 (-) False pphln1
XM_039791540.1 mRNA upstream 115938 15472275 ~ 15491287 (-) True pphln1
XM_039791541.1 mRNA upstream 115938 15472275 ~ 15490976 (-) False pphln1
TU309380 other downstream 258670 15062263 ~ 15088329 (-) False znf800b
TU309376 other downstream 285570 15060003 ~ 15061429 (-) False znf800b
unassigned_transcript_1491 other downstream 1537320 13809607 ~ 13809679 (-) True trnak-cuu_13
TU308919 other downstream 1687727 13651662 ~ 13659272 (-) True LOC120553486
TU308872 other downstream 1817221 13520265 ~ 13529778 (-) False LOC120553470
TU309610 other upstream 414901 15771238 ~ 15791853 (-) True G228191
TU309744 other upstream 1392505 16748842 ~ 16823432 (-) True G228291
TU309971 other upstream 1938785 17295122 ~ 17302198 (-) True G228465
TU310227 other upstream 2474335 17830672 ~ 17927705 (-) False tafa5a
TU310229 other upstream 2474335 17830672 ~ 18100995 (-) False tafa5a

Expression Profile