RNA id: XM_039792299.1


Basic Information

Item Value
RNA id XM_039792299.1
length 2019
RNA type mRNA
GC content 0.53
exon number 8
gene id aebp2
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 27019362 ~ 27044417 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACATCTTTCTCAATAGACAAGCTTTGGCCATGCGGGGCCCCGACGTCACGCAAACCCCCTGCTGTGTTTTACGCTTGAAGCGGAGAGTGTGAGTGGAGGAAGAAGGGCAGCCTGAGGGCAACTTTTCGAGTGGAACATCACAAAAATAGCTCTTCGTGCTGTTCGAAAATGGCTCAAATAACGAGCGAAGGGGCCGAAAAAGAGTCTCAGCCGACGTCGGATCAAAACGGAACTGGAGAAACGGCAGAAACCGGTAAGGAGGGACAGGCCGTGCCGGACCCCAAACAGGAACCGGGCGACAACAACGAGAACAGAGCAGGAATGGACGTGAACAGTGGTCATGGTGCGGCGGTGGAGGACGGGGACAACCTGTCTCTTGTTCCCGACGCCGACAAAGAAACCGTGTTACCGACCGAAAAGACCAACAACGACGAAGGGGAACCCAGCAGTAAACTCTCTGAACCGGTGAAAAGTCCCGCACAGGGGAGTTTGGCGAGTGGCACTGATTCCGCACAAGAGGGCTCCCGGGTGCTGAAACAAGAacaaagagagggggagaacgTGTCCTCCTCGCCGCCTGCCGAGCGCACAAAGACCGCGGAGAAAGCCGAGCACGGCACCAAAAGACCGGCCAGCGTGGAACTGACCCCGTCGAATGGAGAGCCGCTCAGTCGGATGGATTCAGAAGACAGTATCGGCAGCACCCTGATGGACATGGAGAGCACGGCGTCCAGCGGTCGCTCCACCCCGGCCATGCTGAACGGTCACAGCGCGGTGGCGGGGAGTGGCTCGGCACCGGCAGGGGGCAAGTCTCTGAGCTACACGTGCTGCTGGGATCACTGCCAGCTGCTGTTTCTCAGCAGCCCCGACCTGGCTGAACACATCAGAGCCACGCATGTGGACGGACAGAGAGGaggggtgtttgtgtgtctgtggaaGGGCTGCAAGGTGTACAACACGCCGTCCACCAGTCAGAGCTGGCTTCAGAGACACATGCTGACCCACAGTGGAGACAAGCCATTCAAGTGTGTGGTGGGAGGCTGCAACGCCACGTTTGCCTCTCAGGGGGGGCTGGCCCGTCACGTCCCCACTCACTTCAGCTCACAGAGTTCATCCAAAGTGTCCAGTCAGGGCAAAGTGAAGGAGGAGTCTCCATCCAAGGCTGGCCTCAACAAGAGGAGGAAACTCAAGAACAAACACAGACGCTCCCTCCCCCGACCACATGACTTCTTTGACGCTCAGACCATGGACGCCATCCGCCATCGAGCCATCTGCCTCAACCTGGCAACACACATCGAGAGCTTGGGCAACGGACACAGTGTGGTCTTCCACAGCACGGTAATAGCCAGGAGGAAAGAGGACTCTGGGAAAGTGAAGGTCTTGTTGCACTGGACACCTGAAGACATACTGCCAGATGTGTGGGTGAATGAGAGCGACAGACTGCAGCAGAAGACCAAGGTGGTTCATCTGTCCAAGCTGCCTACAGACACAGCTATACACCTGGACCCCAACatctacagGATGTTCTTCTAACCACCTCCAGGGGAGCGCCACTGTCACTTCCTGCTTATCTAACCTCGAGGAGGAGATTGCCTCCTTTTCTCTTCATCTCCATCTCTATGTTCCTCTTCTCCCCTCCACCTTCTCCCAGAGGATGCTGGGAATTTAGTGACTTATTTGTCATGGCTGTCTGCGGCCACCAGTGTTTTCAGCATTAGGTGCTGAGTTTACAGGGGGCATGAAGGGGGAGATGTTGCTTGTTTTAGGTAACACAACTAGACTGAAAACTAACTGACAGAAGTGTAACTGTAGACAGACACGTGTAGAGAGAAGCTGTCTTTGTAAATACTTGAGATttgtaatatatttttatactttgaatttttttactgtactgtagataGATGTTTTTTCTGCCAAACGTTTTTAAATAGATGTTTTTAAAAACTGATGATACTGGTCATGTGCATATAGCTGGCATTTCTCTGGTTTGATGTCATTAAACTTTTCCAACCTCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312799 lncRNA upstream 47519 26963162 ~ 26971853 (+) False LOC120553759
TU312811 lncRNA upstream 138385 26880507 ~ 26880987 (+) True G230658
TU312795 lncRNA upstream 338274 26680864 ~ 26681098 (+) True G230645
TU312785 lncRNA upstream 405200 26613952 ~ 26614172 (+) True G230635
TU312750 lncRNA upstream 587250 26428434 ~ 26432122 (+) True G230600
TU312841 lncRNA downstream 71509 27115926 ~ 27116894 (+) True G230685
TU312905 lncRNA downstream 187977 27232394 ~ 27233038 (+) True G230746
TU312936 lncRNA downstream 238082 27282499 ~ 27282919 (+) True G230773
TU312937 lncRNA downstream 238536 27282953 ~ 27283275 (+) True G230774
TU312947 lncRNA downstream 426671 27471088 ~ 27472678 (+) True G230783
XM_039792455.1 mRNA upstream 50440 26693356 ~ 26968932 (+) True LOC120553759
XM_039792278.1 mRNA upstream 592328 26386815 ~ 26427044 (+) True braf
XM_039792277.1 mRNA upstream 592328 26386818 ~ 26427044 (+) False braf
XM_039792384.1 mRNA upstream 639515 26374205 ~ 26379857 (+) False mrps33
XM_039791355.1 mRNA downstream 1649 27046066 ~ 27051282 (+) True ndufa5
XM_039791354.1 mRNA downstream 24660 27069077 ~ 27071984 (+) False LOC120553194
XM_039791352.1 mRNA downstream 24660 27069077 ~ 27071984 (+) True LOC120553194
XM_039791351.1 mRNA downstream 93629 27138046 ~ 27146791 (+) True gpr22a
XM_039792036.1 mRNA downstream 179845 27224262 ~ 27231391 (+) True LOC120553521
TU312731 other upstream 638263 26372736 ~ 26381109 (+) True mrps33
TU312732 other upstream 638263 26372736 ~ 26381109 (+) False mrps33
TU312620 other upstream 972691 26038287 ~ 26046681 (+) False arhgef39
TU312157 other upstream 2241114 24620812 ~ 24778258 (+) True G230148
TU312075 other upstream 2706434 24309936 ~ 24312938 (+) False LOC120553083
XR_005638128.1 other downstream 24660 27069077 ~ 27072552 (+) False LOC120553194
TU313012 other downstream 558588 27603005 ~ 27603702 (+) True G230842
TU313087 other downstream 896904 27941321 ~ 27947473 (+) True G230904
TU313169 other downstream 1013314 28057731 ~ 28058218 (+) True G230975
unassigned_transcript_1530 other downstream 1426389 28470806 ~ 28470878 (+) True trnat-ugu_41

Expression Profile